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  1. (hist) ‎Conventions used in this guide ‎[0 bytes]
  2. (hist) ‎How this guide is organized ‎[0 bytes]
  3. (hist) ‎PlugInDialogCT MD.java ‎[0 bytes]
  4. (hist) ‎PlugIn Algorithm Median (con't) ‎[0 bytes]
  5. (hist) ‎Skills you need to perform tasks in MIPAV ‎[0 bytes]
  6. (hist) ‎Volume 1, Basics ‎[0 bytes]
  7. (hist) ‎Volume 2, Algorithms ‎[0 bytes]
  8. (hist) ‎Where to find more information ‎[0 bytes]
  9. (hist) ‎Who should use this guide ‎[0 bytes]
  10. (hist) ‎Technical Information ‎[25 bytes]
  11. (hist) ‎MIPAV Script Running ‎[35 bytes]
  12. (hist) ‎MIPAV Script Recording ‎[42 bytes]
  13. (hist) ‎Figure 1 ‎[48 bytes]
  14. (hist) ‎Histogram ‎[70 bytes]
  15. (hist) ‎Algorithms used to draw VOI ‎[87 bytes]
  16. (hist) ‎DTI: Create List File ‎[92 bytes]
  17. (hist) ‎Subversion topics ‎[121 bytes]
  18. (hist) ‎Documentation of MIPAV contributions by Geometric Tools ‎[123 bytes]
  19. (hist) ‎Mosaic Registration ‎[207 bytes]
  20. (hist) ‎Histogram Cumulative ‎[242 bytes]
  21. (hist) ‎Visualizing Images: Displaying images using the surface renderer view ‎[256 bytes]
  22. (hist) ‎Making a MIPAV Algorithm Scriptable ‎[257 bytes]
  23. (hist) ‎Filters (Spatial): Kernel Regression ‎[276 bytes]
  24. (hist) ‎DTI Estimate tensor ‎[283 bytes]
  25. (hist) ‎Filters (Spatial): Haralick Texture ‎[284 bytes]
  26. (hist) ‎Combining scripts and other programs ‎[352 bytes]
  27. (hist) ‎Recording utilities usage with the history feature ‎[353 bytes]
  28. (hist) ‎Why can't I see the plugins I install in the menu? ‎[361 bytes]
  29. (hist) ‎Filters (Spatial): Local Normalization ‎[384 bytes]
  30. (hist) ‎Transform nonlinear ‎[385 bytes]
  31. (hist) ‎MIPAV FAQ ‎[470 bytes]
  32. (hist) ‎VOIs ‎[470 bytes]
  33. (hist) ‎Inverting the image ‎[482 bytes]
  34. (hist) ‎Quitting MIPAV ‎[495 bytes]
  35. (hist) ‎Sample images ‎[505 bytes]
  36. (hist) ‎Visualizing Images: Displaying images using the cine (movie) view ‎[523 bytes]
  37. (hist) ‎Viewing MIPAV news and updates ‎[661 bytes]
  38. (hist) ‎Saving a history of actions on images ‎[689 bytes]
  39. (hist) ‎Developing new tools using the API ‎[799 bytes]
  40. (hist) ‎3-D Surface Views ‎[866 bytes]
  41. (hist) ‎Copying images using the Clone command ‎[871 bytes]
  42. (hist) ‎Supported utilities ‎[874 bytes]
  43. (hist) ‎Muscle Segmentation ‎[883 bytes]
  44. (hist) ‎Load and save profile ‎[891 bytes]
  45. (hist) ‎Changing Image Datasets Using MIPAV Utilities ‎[937 bytes]
  46. (hist) ‎Video tutorials ‎[962 bytes]
  47. (hist) ‎Task 4, Transforming Talairach image and Talairach VOIs-1 to the original image ‎[1,028 bytes]
  48. (hist) ‎The SRB tab of the MIPAV options dialog box ‎[1,048 bytes]
  49. (hist) ‎Developing and using scripts ‎[1,056 bytes]
  50. (hist) ‎Mapping Brains in Talairach Space ‎[1,077 bytes]
  51. (hist) ‎Viewing the Talairach grid on Talairach images ‎[1,083 bytes]
  52. (hist) ‎MuscleSegmentation plugin ‎[1,101 bytes]
  53. (hist) ‎Segmenting Images Using Contours and Masks: Converting masks to VOI contours and paints ‎[1,114 bytes]
  54. (hist) ‎Modifying image resolutions ‎[1,116 bytes]
  55. (hist) ‎Using Scripts (Macros) in MIPAV ‎[1,146 bytes]
  56. (hist) ‎To show the splash screen ‎[1,233 bytes]
  57. (hist) ‎Main Page ‎[1,273 bytes]
  58. (hist) ‎Developing Plugin Programs ‎[1,530 bytes]
  59. (hist) ‎Calculating the volume of masks ‎[1,533 bytes]
  60. (hist) ‎Task 5, Copying Talairach VOIs to segmented images ‎[1,566 bytes]
  61. (hist) ‎Image overlays and composites ‎[1,627 bytes]
  62. (hist) ‎TRE Scripts ‎[1,649 bytes]
  63. (hist) ‎Volume renderer GPU support listing ‎[1,719 bytes]
  64. (hist) ‎Testing the connection ‎[1,739 bytes]
  65. (hist) ‎FAQ: Why do I get an exception when running MIPAV via X11 forwarding on Linux? ‎[1,793 bytes]
  66. (hist) ‎FAQ: Understanding Changes in MIPAV ‎[1,823 bytes]
  67. (hist) ‎MIPAV feature list ‎[1,831 bytes]
  68. (hist) ‎Crontab notes ‎[1,849 bytes]
  69. (hist) ‎Visualizing Images: Displaying images using the default view ‎[1,921 bytes]
  70. (hist) ‎FAQ: How can I fix a "Cannot load Java Virtual Machine" error (memory limit set too high)? ‎[1,975 bytes]
  71. (hist) ‎Segmenting Images Using Contours and Masks:Converting VOI contours to masks ‎[1,992 bytes]
  72. (hist) ‎Displaying MIPAV Toolbars ‎[2,079 bytes]
  73. (hist) ‎Contributing code to MIPAV ‎[2,225 bytes]
  74. (hist) ‎Filters (Wavelet): De-noising BLS GSM ‎[2,380 bytes]
  75. (hist) ‎Muscle Segmentation problems at UCSD ‎[2,447 bytes]
  76. (hist) ‎Getting Started with Eclipse ‎[2,470 bytes]
  77. (hist) ‎Filters (Spatial): Slice Averaging ‎[2,675 bytes]
  78. (hist) ‎ImageJ ‎[2,733 bytes]
  79. (hist) ‎Transformation matrix ‎[2,775 bytes]
  80. (hist) ‎Setting up scripting ‎[2,782 bytes]
  81. (hist) ‎Cumulative Histogram ‎[2,796 bytes]
  82. (hist) ‎DTI Pipeline Tutorials ‎[2,826 bytes]
  83. (hist) ‎Degrees of freedom ‎[2,830 bytes]
  84. (hist) ‎Reslice-Isotropic Voxels ‎[2,947 bytes]
  85. (hist) ‎Eclipse installation and configuration documentation ‎[2,964 bytes]
  86. (hist) ‎MIPAV mailing list ‎[2,995 bytes]
  87. (hist) ‎Segmenting Images Using Contours and Masks ‎[3,083 bytes]
  88. (hist) ‎Visualizing Images: Displaying images using the link to another image view ‎[3,099 bytes]
  89. (hist) ‎Threshold ‎[3,105 bytes]
  90. (hist) ‎Understanding plug-in programs ‎[3,113 bytes]
  91. (hist) ‎Flipping images ‎[3,144 bytes]
  92. (hist) ‎Subsampling images ‎[3,146 bytes]
  93. (hist) ‎Autocorrelation Coefficients ‎[3,174 bytes]
  94. (hist) ‎Quantify Mask ‎[3,215 bytes]
  95. (hist) ‎Histogram summary ‎[3,231 bytes]
  96. (hist) ‎Task 6, Calculating statistics on VOIs ‎[3,316 bytes]
  97. (hist) ‎Editing and deleting scripts ‎[3,317 bytes]
  98. (hist) ‎Understanding MIPAV capabilities ‎[3,398 bytes]
  99. (hist) ‎Transform to power of 2 ‎[3,495 bytes]
  100. (hist) ‎Working with DICOM Images ‎[3,524 bytes]

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