Difference between revisions of "Map IDs"
From MIPAV
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[http://mipav.cit.nih.gov/pubwiki/index.php/ http://mipav.cit.nih.gov/pubwiki/index.php/] | [http://mipav.cit.nih.gov/pubwiki/index.php/ http://mipav.cit.nih.gov/pubwiki/index.php/] | ||
which should be added to the topic URL. | which should be added to the topic URL. | ||
+ | |||
+ | |||
+ | === Map IDs used === | ||
{|class="wikitable" style="text-align: left; color: #3300CC;" | {|class="wikitable" style="text-align: left; color: #3300CC;" | ||
|'''MAP ID'''||'''Algorithm'''||'''URL'''||'''TOPIC NAME<br/> (WIKI link)'''||'''Needs cleaning/writing?''' | |'''MAP ID'''||'''Algorithm'''||'''URL'''||'''TOPIC NAME<br/> (WIKI link)'''||'''Needs cleaning/writing?''' | ||
− | |||
− | |||
− | |||
− | |||
|- | |- | ||
|MS00001|| PlugInMuscleImageDisplay||N/A||N/A||need to write | |MS00001|| PlugInMuscleImageDisplay||N/A||N/A||need to write | ||
|- | |- | ||
− | | MS00050|| PlugInMuscleImageDisplay542a ||N/A||N/A||need to write | + | |MS00050|| PlugInMuscleImageDisplay542a ||N/A||N/A||need to write |
|- | |- | ||
|10052||Microscopy>Colocalization> Orthogonal: Applying the algorithm||Microscopy_Colocalization_Orthogonal_Regression#Applying_the_algorithm || [[Microscopy Colocalization Orthogonal Regression]] || NO | |10052||Microscopy>Colocalization> Orthogonal: Applying the algorithm||Microscopy_Colocalization_Orthogonal_Regression#Applying_the_algorithm || [[Microscopy Colocalization Orthogonal Regression]] || NO | ||
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|10046||Registration: Manual 2D Series||Registration:_Manual_2D_Series||[[Registration: Manual 2D Series]]|| NO | |10046||Registration: Manual 2D Series||Registration:_Manual_2D_Series||[[Registration: Manual 2D Series]]|| NO | ||
|- | |- | ||
− | |10047||Registration: Manual 2D Series: Applying the algorithm|| Registration:_Manual_2D_Series#Applying_the_Manual_2D_Series_algorithm_on_2D_images ||[[Registration: Manual 2D Series#ApplyingOnTwoD|Applying the Manual 2D Series algorithm on 2D images]]|| | + | |10047||Registration: Manual 2D Series: Applying the algorithm|| Registration:_Manual_2D_Series#Applying_the_Manual_2D_Series_algorithm_on_2D_images ||[[Registration: Manual 2D Series#ApplyingOnTwoD|Applying the Manual 2D Series algorithm on 2D images]]||NOT USED |
|- | |- | ||
− | |19060||Registration: Manual 2D Series: Blended tab||Registration:_Manual_2D_Series#Blended_tab||[[Registration: Manual 2D Series#BlendedTab| Blended tab]]|| | + | |19060||Registration: Manual 2D Series: Blended tab||Registration:_Manual_2D_Series#Blended_tab||[[Registration: Manual 2D Series#BlendedTab| Blended tab]]||NOT USED |
|- | |- | ||
− | |19062||Registration: Manual 2D Series: Blended tab||Registration:_Manual_2D_Series#Dual_tab||[[Registration: Manual 2D Series#DualTab| Dual tab]]|| | + | |19062||Registration: Manual 2D Series: Blended tab||Registration:_Manual_2D_Series#Dual_tab||[[Registration: Manual 2D Series#DualTab| Dual tab]]||NOT USED |
|- | |- | ||
− | |19064||Registration: Manual 2D Series: Applying the Manual 2D Series algorithm to 2.5D images||Registration:_Manual_2D_Series#Applying_the_Manual_2D_Series_algorithm_on_2.5_images|| [[Registration: Manual 2D Series#Applying25D|Applying the Manual 2D Series algorithm on 2.5 images]]|| | + | |19064||Registration: Manual 2D Series: Applying the Manual 2D Series algorithm to 2.5D images||Registration:_Manual_2D_Series#Applying_the_Manual_2D_Series_algorithm_on_2.5_images|| [[Registration: Manual 2D Series#Applying25D|Applying the Manual 2D Series algorithm on 2.5 images]]|| NOT USED |
|- | |- | ||
|U4009 ||MIPAV Utilities: Add Image Margins ||Adding_image_margins||[[Adding image margins]]|| NO | |U4009 ||MIPAV Utilities: Add Image Margins ||Adding_image_margins||[[Adding image margins]]|| NO | ||
|- | |- | ||
+ | |U4003 ||MIPAV Utilities: Extract 3d subset ||4_D_tools#Extracting_3D_subset_from_4D||[[4 D tools#Extracting 3D subset from 4D]]|| NO | ||
+ | |- | ||
|10506 ||MIPAV Utilities: Contouring structures interactively ||Segmenting_Images_Using_Contours_and_Masks:_Using_contours_to_segment_a_VOI||[[Segmenting Images Using Contours and Masks: Using contours to segment a VOI#ContouringStructuresInteractively| Contouring Structures Interactively]]|| NO | |10506 ||MIPAV Utilities: Contouring structures interactively ||Segmenting_Images_Using_Contours_and_Masks:_Using_contours_to_segment_a_VOI||[[Segmenting Images Using Contours and Masks: Using contours to segment a VOI#ContouringStructuresInteractively| Contouring Structures Interactively]]|| NO | ||
|- | |- | ||
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|- | |- | ||
|10007 ||Filters (Spatial): Anisotropic Diffusion: Applying the algorithm||Filters_(Spatial)_Anisotropic_Diffusion#Applying_the_Anisotropic_Diffusion_algorithm||[[Filters (Spatial) Anisotropic Diffusion#ApplyingAnisotropicDiffusion |Filters (Spatial) Anisotropic Diffusion- Applying the algorithm]]|| NO | |10007 ||Filters (Spatial): Anisotropic Diffusion: Applying the algorithm||Filters_(Spatial)_Anisotropic_Diffusion#Applying_the_Anisotropic_Diffusion_algorithm||[[Filters (Spatial) Anisotropic Diffusion#ApplyingAnisotropicDiffusion |Filters (Spatial) Anisotropic Diffusion- Applying the algorithm]]|| NO | ||
− | |||
− | |||
|- | |- | ||
|Autocor001 ||Autocorrelation coefficients ||Autocorrelation_Coefficients||[[Autocorrelation Coefficients#ApplyingAutocorrelationCoefficients| Applying Autocorrelation Coefficients]]|| NO | |Autocor001 ||Autocorrelation coefficients ||Autocorrelation_Coefficients||[[Autocorrelation Coefficients#ApplyingAutocorrelationCoefficients| Applying Autocorrelation Coefficients]]|| NO | ||
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|Autocovar01 ||Autocovariance coefficients ||Autocovariance_Coefficients||[[Autocovariance Coefficients#ApplyingAutocovarianceCoefficients| Applying Autocovariance Coefficients]]|| NO | |Autocovar01 ||Autocovariance coefficients ||Autocovariance_Coefficients||[[Autocovariance Coefficients#ApplyingAutocovarianceCoefficients| Applying Autocovariance Coefficients]]|| NO | ||
|- | |- | ||
− | |Barr010||Barrel distortion correction||Barrel_Distortion_Correction||[[Barrel Distortion Correction]]|| | + | |Barr010||Barrel distortion correction||Barrel_Distortion_Correction||[[Barrel Distortion Correction]]||NO |
|- | |- | ||
− | |Mor001||Background Distance map||Morphology#Background_Distance_map||[[Morphology#Background Distance map]]||NO | + | |Mor001||Morphology: Background Distance map||Morphology#Background_Distance_map||[[Morphology#Background Distance map]]||NO |
+ | |- | ||
+ | |Mor010FE||Morphology: Apply find Edges||Morphology#Find_Edges||[[Morphology#Find_Edges]]||NO | ||
|- | |- | ||
|10090||Extract Brain: Extract Brain Surface (BSE)||Extract_Brain:_Extract_Brain_Surface_(BSE)||[[Extract Brain: Extract Brain Surface (BSE)#ApplyingBSE| Applying BSE]]||NO | |10090||Extract Brain: Extract Brain Surface (BSE)||Extract_Brain:_Extract_Brain_Surface_(BSE)||[[Extract Brain: Extract Brain Surface (BSE)#ApplyingBSE| Applying BSE]]||NO | ||
Line 71: | Line 72: | ||
|- | |- | ||
|Mor005Cl1 ||Morphology: Close: Applying the closing ||Morphology#Applying_the_closing||[[Morphology#Applying the closing]]|| NO | |Mor005Cl1 ||Morphology: Close: Applying the closing ||Morphology#Applying_the_closing||[[Morphology#Applying the closing]]|| NO | ||
+ | |- | ||
+ | |Mor002Dil ||Morphology: Dilation||Morphology#Dilate||[[Morphology#Dilate]]|| NO | ||
|- | |- | ||
|10086 ||Filters (Spatial): Coherence-Enhancing Diffusion ||Filters_(Spatial):_Coherence-Enhancing_Diffusion#Applying_the_Coherence-Enhancing_Diffusion_algorithm||[[Filters (Spatial): Coherence-Enhancing Diffusion#Applying the Coherence-Enhancing Diffusion algorithm]]|| NO | |10086 ||Filters (Spatial): Coherence-Enhancing Diffusion ||Filters_(Spatial):_Coherence-Enhancing_Diffusion#Applying_the_Coherence-Enhancing_Diffusion_algorithm||[[Filters (Spatial): Coherence-Enhancing Diffusion#Applying the Coherence-Enhancing Diffusion algorithm]]|| NO | ||
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|- | |- | ||
|U4013 ||Utilities: Convert image types ||Converting_image_datasets_to_different_data_types||[[Converting image datasets to different data types]]|| NO | |U4013 ||Utilities: Convert image types ||Converting_image_datasets_to_different_data_types||[[Converting image datasets to different data types]]|| NO | ||
+ | |- | ||
+ | |U4019 ||Utilities: DICOM: Save range of slices ||Converting_non-DICOM_image_files_to_DICOM_format#Save_Range_of_Slices_dialog_box||[[Converting non-DICOM image files to DICOM format#Save Range of Slices dialog box]]|| NO | ||
|- | |- | ||
|U4021 ||Utilities: Crop ||Cropping_images||[[Cropping images]]|| NO | |U4021 ||Utilities: Crop ||Cropping_images||[[Cropping images]]|| NO | ||
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|U4023 ||Utilities: Crop boundary pixels||Cropping_images#Crop_Boundary_Pixels||[[Cropping images#Crop Boundary Pixels]]|| NO | |U4023 ||Utilities: Crop boundary pixels||Cropping_images#Crop_Boundary_Pixels||[[Cropping images#Crop Boundary Pixels]]|| NO | ||
|- | |- | ||
− | | | + | |U4035||Utilities: Invert Image||Inverting_the_image||[[Inverting the image]]|| NO |
+ | |- | ||
+ | |U4039||Utilities: Additive noise||Adding_noise_to_images||[[Adding noise to images]]|| NO | ||
|- | |- | ||
|OAR19076 ||Optimized Automatic Registration dialog box ||Optimized_automatic_registration_3D#Optimized_Automatic_Registration_dialog_box_options||[[Optimized automatic registration 3D#Optimized Automatic Registration dialog box options]]|| NO | |OAR19076 ||Optimized Automatic Registration dialog box ||Optimized_automatic_registration_3D#Optimized_Automatic_Registration_dialog_box_options||[[Optimized automatic registration 3D#Optimized Automatic Registration dialog box options]]|| NO | ||
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|Haral1001||N/A||N/A||N/A|| | |Haral1001||N/A||N/A||N/A|| | ||
|- | |- | ||
− | |||
− | |||
|Mor004OP1||Morphology: Applying the opening||Morphology#Open||[[Morphology#Open]]|| NO | |Mor004OP1||Morphology: Applying the opening||Morphology#Open||[[Morphology#Open]]|| NO | ||
|- | |- | ||
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|- | |- | ||
|U4055||Utilities:Insert slice||Slice_tools#Applying_insert_missing_slices||[[Slice tools#Applying insert missing slices]]|| NO | |U4055||Utilities:Insert slice||Slice_tools#Applying_insert_missing_slices||[[Slice tools#Applying insert missing slices]]|| NO | ||
+ | |- | ||
+ | |U4059||Utilities:Remove slices||Inserting_slices_into_image_datasets#Removing_images_.28slices.29_from_datasets||[[Inserting slices into image datasets#Removing images .28slices.29 from datasets]]|| NO | ||
|- | |- | ||
|PT0007||Paint Power Tools dialog box||Segmenting_Images_Using_Contours_and_Masks:_Advanced_paint_and_Power_Paint_tools||[[Segmenting Images Using Contours and Masks: Advanced paint and Power Paint tools]]|| NO | |PT0007||Paint Power Tools dialog box||Segmenting_Images_Using_Contours_and_Masks:_Advanced_paint_and_Power_Paint_tools||[[Segmenting Images Using Contours and Masks: Advanced paint and Power Paint tools]]|| NO | ||
Line 160: | Line 167: | ||
|10026||Fuzzy C-Means: Multispectral and Single Channel Algorithms||Fuzzy_C-Means:_Multispectral_and_Single_Channel_Algorithms||[[Fuzzy C-Means: Multispectral and Single Channel Algorithms]]|| NO | |10026||Fuzzy C-Means: Multispectral and Single Channel Algorithms||Fuzzy_C-Means:_Multispectral_and_Single_Channel_Algorithms||[[Fuzzy C-Means: Multispectral and Single Channel Algorithms]]|| NO | ||
|- | |- | ||
− | |HoughCircle002||Hough Transform||Hough_Transform#Running_the_Hough_Transform_for_Circle_Detection_algorithm||Hough Transform#Running the Hough Transform for Circle Detection algorithm|| NO | + | |HoughCircle002||Hough Transform||Hough_Transform#Running_the_Hough_Transform_for_Circle_Detection_algorithm||[[Hough Transform#Running the Hough Transform for Circle Detection algorithm]]|| NO |
|- | |- | ||
− | |HoughLine001||Hough Transform: Line||Hough_Transform#Running_the_Hough_Transform_for_Line_Filing_algorithm||Hough Transform#Running the Hough Transform for Line Filing algorithm|| NO | + | |HoughLine001||Hough Transform: Line||Hough_Transform#Running_the_Hough_Transform_for_Line_Filing_algorithm||[[Hough Transform#Running the Hough Transform for Line Filing algorithm]]|| NO |
|- | |- | ||
− | |HoughPar004||Hough Transform: Parabola||Hough_Transform#Running_the_Hough_Transform_for_Parabola_Detection_algorithm||Hough Transform#Running the Hough Transform for Parabola Detection algorithm|| NO | + | |HoughPar004||Hough Transform: Parabola||Hough_Transform#Running_the_Hough_Transform_for_Parabola_Detection_algorithm||[[Hough Transform#Running the Hough Transform for Parabola Detection algorithm]]|| NO |
+ | |- | ||
+ | |HoughHyperbola001||Hough Transform: Hyperbola||N/A||N/A|| NOT USED | ||
|- | |- | ||
|10083||Microscopy: FRAP||Microscopy:_FRAP_(Fluorescence_Recovery_After_Photobleaching)#Applying_the_FRAP_algorithm||[[Microscopy: FRAP (Fluorescence Recovery After Photobleaching)#Applying the FRAP algorithm]]|| NO | |10083||Microscopy: FRAP||Microscopy:_FRAP_(Fluorescence_Recovery_After_Photobleaching)#Applying_the_FRAP_algorithm||[[Microscopy: FRAP (Fluorescence Recovery After Photobleaching)#Applying the FRAP algorithm]]|| NO | ||
|- | |- | ||
− | |Hist010Cum||Cumulative Histogram||Cumulative_Histogram#Applying_Cumulative_Histogram_algorithm_to_images||Cumulative Histogram#Applying Cumulative Histogram algorithm to images|| | + | |Hist010Cum||Cumulative Histogram||Cumulative_Histogram#Applying_Cumulative_Histogram_algorithm_to_images||[[Cumulative Histogram#Applying Cumulative Histogram algorithm to images]]|| NOT USED |
|- | |- | ||
|U4041||Utilities: Pad||Pad||Pad|| NO | |U4041||Utilities: Pad||Pad||Pad|| NO | ||
|- | |- | ||
− | |10034||Reslice-Isotropic Voxels||Reslice-Isotropic_Voxels||Reslice-Isotropic Voxels|| NO | + | |10034||Reslice-Isotropic Voxels||Reslice-Isotropic_Voxels||[[Reslice-Isotropic Voxels]]|| NO |
|- | |- | ||
− | |Mor008ES||Morphology: Apply Evaluate Segmentation||Morphology#Applying_evaluate_segmentation||Morphology#Applying evaluate segmentation|| NO | + | |Mor008ES||Morphology: Apply Evaluate Segmentation||Morphology#Applying_evaluate_segmentation||[[Morphology#Applying evaluate segmentation]]|| NO |
|- | |- | ||
− | |Mor009FH||Morphology: Apply Fill Holes||Morphology#Applying_fill_holes||Morphology#Applying fill holes|| NO | + | |Mor009FH||Morphology: Apply Fill Holes||Morphology#Applying_fill_holes||[[Morphology#Applying fill holes]]|| NO |
|- | |- | ||
|ISPImages01||N/A||N/A||N/A|| NO | |ISPImages01||N/A||N/A||N/A|| NO | ||
|- | |- | ||
− | |Edge020||Edge Detection: Edge Laplacian dialog box||Edge_Detection:_Zero_X_Laplacian||Edge Detection: Zero X Laplacian|| NO | + | |Edge020||Edge Detection: Edge Laplacian dialog box||Edge_Detection:_Zero_X_Laplacian||[[Edge Detection: Zero X Laplacian]]|| NO |
|- | |- | ||
− | |Edge022||Edge Detection: EdgeNMSuppression dialog box||Edge_Detection:_Zero_X_Non-Maximum_Suppression#Applying_the_Zero_X_Non-Maximum_Suppression_algorithm||Edge Detection: Zero X Non-Maximum Suppression#Applying the Zero X Non-Maximum Suppression algorithm|| NO | + | |Edge022||Edge Detection: EdgeNMSuppression dialog box||Edge_Detection:_Zero_X_Non-Maximum_Suppression#Applying_the_Zero_X_Non-Maximum_Suppression_algorithm||[[Edge Detection: Zero X Non-Maximum Suppression#Applying the Zero X Non-Maximum Suppression algorithm]]|| NO |
|- | |- | ||
− | |19003||Microscopy: Blind Deconvolution algorithm||Microscopy:_Blind_Deconvolution#Applying_the_Maximum_Likelihood_Iterative_Blind_Deconvolution_algorithm||Microscopy: Blind Deconvolution#Applying the Maximum Likelihood Iterative Blind Deconvolution algorithm|| NO | + | |19003||Microscopy: Blind Deconvolution algorithm||Microscopy:_Blind_Deconvolution#Applying_the_Maximum_Likelihood_Iterative_Blind_Deconvolution_algorithm||[[Microscopy: Blind Deconvolution#Applying the Maximum Likelihood Iterative Blind Deconvolution algorithm]]|| NO |
|- | |- | ||
− | |10045||Extract Brain Surface: Applying the algorithm||Extract_Brain:_Extract_Brain_Surface_(BET)||Extract Brain: Extract Brain Surface (BET)|| NO | + | |10045||Extract Brain Surface: Applying the algorithm||Extract_Brain:_Extract_Brain_Surface_(BET)||[[Extract Brain: Extract Brain Surface (BET)]]|| NO |
|- | |- | ||
+ | |U4043||Utilities: Quantify Mask||Quantify_Mask||[[Quantify Mask]]|| NO | ||
+ | |- | ||
+ | |U4033||Utilities: Image Math||Image_Math||[[Image Math]]|| NO | ||
+ | |- | ||
+ | |U4037||Utilities: Match Images||Matching_images||[[Matching images]]|| NO | ||
+ | |- | ||
+ | |U4025||Utilities: Fill image||Masking_(filling)_images||[[Masking (filling) images]]|| NO | ||
+ | |- | ||
+ | |U4027||Utilities: Flip Image||Flipping_images||[[Flipping images]]|| NO | ||
+ | |- | ||
+ | |U4045||Utilities: Replace Pixel/Voxel Value||Replacing_pixel/voxel_value_in_images||[[Replacing pixel/voxel value in images]]|| NO | ||
+ | |- | ||
+ | |10009||Filters (Spatial): Gaussian Blur: Applying the algorithm||[[Filters_(Spatial):_Gaussian_Blur||Filters (Spatial): Gaussian Blur]]|| NO | ||
+ | |- | ||
+ | |19040||Transformation tools: Transnform to Power of 2, Resample dialog||Transform_to_power_of_2#Resample_dialog_box||[[Transform to power of 2#Resample dialog box]]|| NO | ||
+ | |- | ||
+ | |CMNCC001||Transform: Conformal Mapping Algorithms:Nearly Circle to Circle algorithm ||Transform:_Conformal_Mapping_Algorithms#Applying_the_Nearly_Circle_to_Circle_algorithm||[[Transform: Conformal Mapping Algorithms#Applying the Nearly Circle to Circle algorithm]]|| YES | ||
+ | |- | ||
+ | |CMSR001||Transform: Conformal Mapping Algorithms:Circular Sector to Rectangle||Transform:_Conformal_Mapping_Algorithms#Circular_Sector_to_Rectangle||[[Transform: Conformal Mapping Algorithms#Circular Sector to Rectangle]]|| YES | ||
+ | |- | ||
+ | |CMEC001||Transform: Conformal Mapping Algorithms:Ellipse to Circle algorithm||Transform:_Conformal_Mapping_Algorithms#Transformation:_Ellipse_to_Circle||[[Transform: Conformal Mapping Algorithms#Transformation: Ellipse to Circle]]|| NOT USED | ||
+ | |- | ||
+ | |CMCR001||Transform: Conformal Mapping Algorithms:Circle to Rectangle algorithm||Transform:_Conformal_Mapping_Algorithms#Applying_the_Circle_to_Rectangle_algorithm||[[Transform: Conformal Mapping Algorithms#Applying the Circle to Rectangle algorithm]]|| YES | ||
+ | |- | ||
+ | |10703||Creating scripts||Using_Scripts_(Macros)_in_MIPAV||[[Using Scripts (Macros) in MIPAV]]|| NO | ||
+ | |- | ||
+ | |10093||Filters (Spatial): Mode: Applying the algorithm||Filters_(Spatial):_Mode#Applying_the_Mode_algorithm||[[Filters (Spatial): Mode#Applying the Mode algorithm]]`|| NO | ||
+ | |- | ||
+ | |MS00001||Applying the Muscle Segmentation algorithm||Muscle_Segmentation#Applying_the_algorithm||[[Muscle Segmentation#Applying the algorithm]]||YES | ||
+ | |- | ||
+ | |MS00050||Muscle Segmentation:Abdomen tab||Muscle_Segmentation#Applying_the_algorithm||[[Muscle Segmentation#Applying the algorithm]]||YES | ||
+ | |- | ||
+ | |MS00040||Muscle Segmentation:Analysis tab||Muscle_Segmentation#Applying_the_algorithm||[[Muscle Segmentation#Applying the algorithm]]||YES | ||
+ | |- | ||
+ | |MS00080||Muscle Segmentation:Analysis tab||Muscle_Segmentation#Applying_the_algorithm||[[Muscle Segmentation#Applying the algorithm]]||YES | ||
+ | |- | ||
+ | |102572||Annotation dialog box||Creating_new_images#Annotating_images_with_text||[[Creating new images#Annotating images with text]]|| NO | ||
+ | |- | ||
+ | |QS5020||Annotation dialog box||Creating_new_images#Annotating_images_with_text||[[Creating new images#Annotating images with text]]|| NOT USED (2 IDS for the same topic) | ||
+ | |- | ||
+ | |19001||Extract Surface (Marching Cubes) Algorithm||Extract_Surface_(Marching_Cubes)#Applying_the_Extract_Surface_Algorithm||[[Extract Surface (Marching Cubes)#Applying the Extract Surface Algorithm]]|| NO | ||
+ | |- | ||
+ | |10017||Filters (Spatial): Median: Applying the algorithm||Filters_(Spatial):_Median#Applying_the_Median_Filter_algorithm||[[Filters (Spatial): Median#Applying the Median Filter algorithm]]|| NO | ||
+ | |- | ||
+ | |10015||Filters (Spatial): Mean: Applying the algorithm||Filters_(Spatial):_Mean#Applying_the_Mean_algorithm||[[Filters (Spatial): Mean#Applying the Mean algorithm]]|| NO | ||
+ | |- | ||
+ | |ISPImages01||NDAR||N/A||N/A|| N/A | ||
+ | |- | ||
+ | |19074||Segmentation:Threshold||Threshold||[[Threshold]]|| NO | ||
+ | |- | ||
+ | |10091||Quick Start: To allocate more memory||Allocating_Memory_in_MIPAV||[[Allocating Memory in MIPAV]]|| NO | ||
+ | |- | ||
+ | |10715||Quick Start: To run scripts from the File menu (group mode)||Running_scripts||[[Running scripts]]|| NO | ||
+ | |- | ||
+ | |10097||Microscopy: FRET Efficiency)||Microscopy:_Fluorescence_Resonance_Energy_Transfer_(FRET)-Acceptor#Applying_the_FRET_algorithm||[[Microscopy: Fluorescence Resonance Energy Transfer (FRET)-Acceptor#Applying the FRET algorithm]]|| NO | ||
+ | |- | ||
+ | |10079||Utilities:Removing images (slices) from datasets (Remove Slices command) ||Inserting_slices_into_image_datasets#Removing_images_.28slices.29_from_datasets||[[Inserting slices into image datasets#Removing images .28slices.29 from datasets]]|| NO | ||
+ | |- | ||
+ | |10231||Calculating VOI statistics||Calculating_statistics_on_VOI_groups||[[Calculating statistics on VOI groups]]|| NO | ||
+ | |- | ||
+ | |GroupStat001||Calculating VOI statistics||Calculating_statistics_on_VOI_groups||[[Calculating statistics on VOI groups]]|| NO | ||
+ | |- | ||
+ | |10025||Filters (Spatial): Unsharp Mask: Applying the algorithm||Filters_(Spatial):_Unsharp_Mask||[[Filters_(Spatial):_Unsharp_Mask]]|| NO | ||
+ | |- | ||
+ | |A3001||Histogram summary||Histogram_summary||[[Histogram summary]]|| NO | ||
+ | |- | ||
+ | |13010||Talairach Transform dialog box||Mapping_Brains_in_Talairach_Space||[[Mapping Brains in Talairach Space]]|| NO | ||
+ | |- | ||
+ | |10013||Filters (Spatial): Laplacian: Applying the algorithm||Filters_(Spatial)_Laplacian#Applying_the_Laplacian_algorithm||[[Filters (Spatial) Laplacian#Applying the Laplacian algorithm]]|| NO | ||
+ | |- | ||
+ | |10019||Filters (Spatial): Nonlinear Noise Reduction: Applying the algorithm||Filters_(Spatial):_Nonlinear_Noise_Reduction#Applying_the_algorithm||[[Filters (Spatial): Nonlinear Noise Reduction#Applying the algorithm]]|| NO | ||
+ | |- | ||
+ | |StDev001||Standard Deviation Threshold: Applying the algorithm to grayscale images||Standard_Deviation_Threshold#Applying_the_algorithm_to_grayscale_images||[[Standard Deviation Threshold#Applying the algorithm to grayscale images]]|| NO | ||
+ | |- | ||
+ | |StDev005||Standard Deviation Threshold: Applying the algorithm to RGB images||Standard_Deviation_Threshold#Applying_the_algorithm_to_grayscale_images||[[Standard Deviation Threshold#Applying the algorithm to RGB images]]|| NO | ||
+ | |- | ||
+ | |U4031||Utilities: Image Calculator: Enter Advanced Operator dialog box||Image_Calculator:_Advanced_image_calculator_options#Enter_Advanced_Operator_dialog_box||[[Image Calculator: Advanced image calculator options#Enter Advanced Operator dialog box]]|| NO | ||
+ | |- | ||
+ | |U4063||Utilities: Subtract VOI Background||Subtract_VOI_Background||[[Subtract VOI Background]]|| NO | ||
+ | |- | ||
+ | |PT0003||Paint tools: Multiple paint tools dialog box||Segmenting_Images_Using_Contours_and_Masks:_Advanced_paint_and_Power_Paint_tools#Multiple_Paint_Tools_dialog_box_options||[[Segmenting Images Using Contours and Masks: Advanced paint and Power Paint tools#Multiple Paint Tools dialog box options]]|| NO | ||
+ | |- | ||
+ | |Mor007DM||Morphology: Apply Distance map||Morphology#Distance_Map||[[Morphology#Distance Map]]|| NO | ||
+ | |- | ||
+ | |19006||Shading Correction Inhomogeneity N3 Correction applying||Shading_Correction:_Inhomogeneity_N3_Correction#Applying_the_Inhomogeneity_N3_algorithm||[[Shading Correction: Inhomogeneity N3 Correction#Applying the Inhomogeneity N3 algorithm]]|| NO | ||
+ | |- | ||
+ | | || |||||| | ||
|} | |} | ||
− | + | === More MapIDs used === | |
+ | These MAP IDs were under "MapIDs used, but no wiki:", but I either figure out the corresponding pages for these IDs, or created stub pages. | ||
− | MAP | + | {|class="wikitable" style="text-align: left; color: #3300CC;" |
+ | |'''MAP ID'''||'''Algorithm'''||'''URL'''||'''TOPIC NAME<br/> (WIKI link)'''||'''Needs cleaning/writing?''' | ||
+ | |- | ||
+ | |102572||Annotation dialog box||Creating_new_images#To_annotate_images_with_text:|| [[Creating new images#To annotate images with text:]]|| NO | ||
+ | |- | ||
+ | |Transform010 ||Transforming images||Transform||[[Transform]]|| YES | ||
+ | |- | ||
+ | |DTI00010||DTI: Create List File||DTI:_Create_List_File||[[DTI: Create List File]]||YES | ||
+ | |- | ||
+ | |CrMPmaps001|| PlugInDialogNEIRetinalRegistration||NEIRetinalRegistration||[[NEIRetinalRegistration]]||NO | ||
+ | |- | ||
+ | |AnMPmaps002||NEIRetinalRegistration||NEIRetinalRegistration||[[NEIRetinalRegistration]]||NO | ||
+ | |- | ||
+ | |10021||Filters (Spatial): Nonmaximum Suppression: Applying the algorithm||Filters_(Spatial):_Nonmaximum_Suppression#Applying_the_Nonmaximum_Suppression_algorithm||[[Filters (Spatial): Nonmaximum Suppression#Applying the Nonmaximum Suppression algorithm]]||NO | ||
+ | |- | ||
+ | |PaintGrow001||Creating a mask using the paint grow segmentation method||Creating_a_mask_using_the_Paint_Grow_Segmentation_method||[[Creating a mask using the Paint Grow Segmentation method]]||NO | ||
+ | |- | ||
+ | |10526||Creating a mask using the paint grow segmentation method||Creating_a_mask_using_the_Paint_Grow_Segmentation_method||[[Creating a mask using the Paint Grow Segmentation method]]||This is a MAP ID from [[File:MAP_IDs.pdf]] | ||
+ | |- | ||
+ | |Mor012PA||Apply Particle Analysis||Morphology#Applying_particle_analysis||[[Morphology#Applying particle analysis]]||NO | ||
+ | |- | ||
+ | |10040||Registration: Landmark—Least Squares||Registration:_Landmark-Least_Squares||[[Registration: Landmark-Least Squares]]||NO | ||
+ | |- | ||
+ | |U4005||Remove time volumes||4_D_tools#Removing_time_volumes||[[4 D tools#Removing time volumes]]||NO | ||
+ | |- | ||
+ | |U4015||Concatenate-> RGB||Converting_image_datasets_to_different_data_types#Concatenate-RGB||[[Converting image datasets to different data types#Concatenate-RGB]]||NO | ||
+ | |- | ||
+ | |TransNon10||Transformation tools: Transnform nonlinear||Transform_nonlinear||[[Transform nonlinear]]||YES | ||
+ | |- | ||
+ | |Mor015UE||Apply Ultimate Erode||Morphology#Ultimate_erode||[[Morphology#Ultimate erode]]||NO | ||
+ | |- | ||
+ | |WThresh01||Applying the Wavelet Thresholding algorithm||Filters_(Wavelet):_Thresholding||[[Filters (Wavelet): Thresholding]]||NO | ||
+ | |- | ||
+ | |HoughEllipse003||Hough Transform for Ellipse Detection||Hough_Transform#Running_the_Hough_Transform_for_Ellipse_Detection_algorithm||[[Hough Transform#Running the Hough Transform for Ellipse Detection algorithm]]||NO | ||
+ | |- | ||
+ | |U4051||Utilities: Extract slices/volumes||Slice_tools#Extracting_slices_and_volumes||[[Slice tools#Extracting slices and volumes]]||NO | ||
+ | |- | ||
+ | |FilFr010||Fiters Frequency||Filters_(Frequency)||[[Filters (Frequency)]]||NO | ||
+ | |- | ||
+ | |10096||Microscopy: FRET Bleed Through: Applying the Algorithm||Microscopy:_Fluorescent_Resonance_Energy_Transfer_(FRET)_Bleed_Through_and_Efficiency#Applying_the_FRET_Bleed_Through_algorithm||[[Microscopy: Fluorescent Resonance Energy Transfer (FRET) Bleed Through and Efficiency#Applying the FRET Bleed Through algorithm]]||NO | ||
+ | |- | ||
+ | |Haral1001||Filters (Spatial): Haralick Texture||Filters_(Spatial):_Haralick_Texture||[[Filters (Spatial): Haralick Texture]]||YES | ||
+ | |- | ||
+ | |} | ||
+ | MAP IDs in [[File:MAP_IDs.pdf|PDF]] | ||
[[Category:Help]] | [[Category:Help]] |
Latest revision as of 19:39, 26 September 2012
This page lists all map IDS used in MIPAV to connect software dialogs with MIPAV wiki pages.
Note that the full page URL contains the following prefix - http://mipav.cit.nih.gov/pubwiki/index.php/ which should be added to the topic URL.
Map IDs used
MAP ID | Algorithm | URL | TOPIC NAME (WIKI link) |
Needs cleaning/writing? |
MS00001 | PlugInMuscleImageDisplay | N/A | N/A | need to write |
MS00050 | PlugInMuscleImageDisplay542a | N/A | N/A | need to write |
10052 | Microscopy>Colocalization> Orthogonal: Applying the algorithm | Microscopy_Colocalization_Orthogonal_Regression#Applying_the_algorithm | Microscopy Colocalization Orthogonal Regression | NO |
10308 | DICOM | Posing_queries_and_retrieving_images | Posing queries and retrieving images | NO |
10309 | DICOM | Receiving_and_sending_image_files | Receiving and sending image files | NO |
10305 | DICOM | Sending_and_retrieving_DICOM_images#Creating.2C_editing.2C_and_deleting_servers | Creating, editing, and deleting servers | NO |
10304 | DICOM | Sending_and_retrieving_DICOM_images#Setting_up_the_hosts_table | Setting up the hosts table | NO |
19050 | 2D Histogram | 2D_Histogram | 2D Histogram | NO |
10046 | Registration: Manual 2D Series | Registration:_Manual_2D_Series | Registration: Manual 2D Series | NO |
10047 | Registration: Manual 2D Series: Applying the algorithm | Registration:_Manual_2D_Series#Applying_the_Manual_2D_Series_algorithm_on_2D_images | Applying the Manual 2D Series algorithm on 2D images | NOT USED |
19060 | Registration: Manual 2D Series: Blended tab | Registration:_Manual_2D_Series#Blended_tab | Blended tab | NOT USED |
19062 | Registration: Manual 2D Series: Blended tab | Registration:_Manual_2D_Series#Dual_tab | Dual tab | NOT USED |
19064 | Registration: Manual 2D Series: Applying the Manual 2D Series algorithm to 2.5D images | Registration:_Manual_2D_Series#Applying_the_Manual_2D_Series_algorithm_on_2.5_images | Applying the Manual 2D Series algorithm on 2.5 images | NOT USED |
U4009 | MIPAV Utilities: Add Image Margins | Adding_image_margins | Adding image margins | NO |
U4003 | MIPAV Utilities: Extract 3d subset | 4_D_tools#Extracting_3D_subset_from_4D | 4 D tools#Extracting 3D subset from 4D | NO |
10506 | MIPAV Utilities: Contouring structures interactively | Segmenting_Images_Using_Contours_and_Masks:_Using_contours_to_segment_a_VOI | Contouring Structures Interactively | NO |
10029 | Histogram Equalization: Regional Adaptive: Applying the algorithm | Histogram_Equalization:_Regional_Adaptive | Applying Histogram Equalization Regional Adaptive | NO |
10051 | Histogram Equalization: Applying the neighborhood adaptive algorithm | Histogram_Equalization:_Neighborhood_Adaptive | Applying the neighborhood adaptive algorithm | NO |
10007 | Filters (Spatial): Anisotropic Diffusion: Applying the algorithm | Filters_(Spatial)_Anisotropic_Diffusion#Applying_the_Anisotropic_Diffusion_algorithm | Filters (Spatial) Anisotropic Diffusion- Applying the algorithm | NO |
Autocor001 | Autocorrelation coefficients | Autocorrelation_Coefficients | Applying Autocorrelation Coefficients | NO |
Autocovar01 | Autocovariance coefficients | Autocovariance_Coefficients | Applying Autocovariance Coefficients | NO |
Barr010 | Barrel distortion correction | Barrel_Distortion_Correction | Barrel Distortion Correction | NO |
Mor001 | Morphology: Background Distance map | Morphology#Background_Distance_map | Morphology#Background Distance map | NO |
Mor010FE | Morphology: Apply find Edges | Morphology#Find_Edges | Morphology#Find_Edges | NO |
10090 | Extract Brain: Extract Brain Surface (BSE) | Extract_Brain:_Extract_Brain_Surface_(BSE) | Applying BSE | NO |
Smooth01 | Smooth VOI | Modifying_Contours#Smooth_VOI | Modifying Contours#Smooth VOI | NO |
10506 | Contouring structures interactively | Segmenting_Images_Using_Contours_and_Masks:_Using_contours_to_segment_a_VOI#Contouring_structures_interactively | Segmenting Images Using Contours and Masks: Using contours to segment a VOI#Contouring structures interactively | NO |
U4070 | Utilities: Image Calculator-Bulk Images | Image_Calculator:_Advanced_image_calculator_options#Image_Calculator-Bulk_Images | Image Calculator: Advanced image calculator options#Image Calculator-Bulk Images | NO |
CMCR001 | Circle to Rectangle algorithm | Transform:_Conformal_Mapping_Algorithms#Applying_the_Circle_to_Rectangle_algorithm | Transform: Conformal Mapping Algorithms#Applying the Circle to Rectangle algorithm | YES |
CMSR001 | Circular Sector to Rectangle | Transform:_Conformal_Mapping_Algorithms#Applying_the_Circular_Sector_to_Rectangle_algorithm | Transform: Conformal Mapping Algorithms#Applying the Circular Sector to Rectangle algorithm | YES |
Mor005Cl1 | Morphology: Close: Applying the closing | Morphology#Applying_the_closing | Morphology#Applying the closing | NO |
Mor002Dil | Morphology: Dilation | Morphology#Dilate | Morphology#Dilate | NO |
10086 | Filters (Spatial): Coherence-Enhancing Diffusion | Filters_(Spatial):_Coherence-Enhancing_Diffusion#Applying_the_Coherence-Enhancing_Diffusion_algorithm | Filters (Spatial): Coherence-Enhancing Diffusion#Applying the Coherence-Enhancing Diffusion algorithm | NO |
U4049 | Utilities: Concatenate Images | Slice_tools#Concatenating_images | Slice tools#Concatenating images | NO |
U4001 | Utilities: Convert from 3D to 4D | 4_D_tools#Converting_3D_to_4D_images_and_vise_versa | 4 D tools#Converting 3D to 4D images and vise versa | NO |
U4008 | Utilities: Convert 4D to RGB | 4_D_tools#Convert_4D_to_RGB | 4 D tools#Convert 4D to RGB | NO |
U4013 | Utilities: Convert image types | Converting_image_datasets_to_different_data_types | Converting image datasets to different data types | NO |
U4019 | Utilities: DICOM: Save range of slices | Converting_non-DICOM_image_files_to_DICOM_format#Save_Range_of_Slices_dialog_box | Converting non-DICOM image files to DICOM format#Save Range of Slices dialog box | NO |
U4021 | Utilities: Crop | Cropping_images | Cropping images | NO |
U4023 | Utilities: Crop boundary pixels | Cropping_images#Crop_Boundary_Pixels | Cropping images#Crop Boundary Pixels | NO |
U4035 | Utilities: Invert Image | Inverting_the_image | Inverting the image | NO |
U4039 | Utilities: Additive noise | Adding_noise_to_images | Adding noise to images | NO |
OAR19076 | Optimized Automatic Registration dialog box | Optimized_automatic_registration_3D#Optimized_Automatic_Registration_dialog_box_options | Optimized automatic registration 3D#Optimized Automatic Registration dialog box options | NO |
OAR19078 | Optimized Automatic Registration: Advanced OAR settings dialog box | Optimized_automatic_registration_3D#Advanced_OAR_settings_for_Constrained_Optimized_Automatic_Registration_3D | Optimized automatic registration 3D#Advanced OAR settings for Constrained Optimized Automatic Registration 3D | NO |
ISPImages01 | N/A | N/A | N/A | N/A |
10003 | Fast Fourier Transformation (FFT): Applying the FFT algorithm | Fast_Fourier_Transformation_(FFT)#Applying_the_FFT_algorithm | Fast Fourier Transformation (FFT)#Applying the FFT algorithm | NO |
Mor006Del | Morphology: Apply Delete Objects | Morphology#Applying_the_Delete_algorithm | Morphology#Applying the Delete algorithm | NO |
U4018 | Utilities: To save DICOM images as XMl files | Correcting_image_spacing#To_save_DICOM_images_as_XML_files | Correcting image spacing#To save DICOM images as XML files | YES (some images are lost) |
10067 | Subsampling images (Subsample command) | Subsampling_images | Subsampling images | NO |
10023 | Filters (Spatial): Slice Averaging: Applying the algorithm | Filters_(Spatial):_Slice_Averaging | Filters (Spatial): Slice Averaging | NO |
U4029 | Image Calculator | Image_Calculator | Image Calculator | NO |
Mor014Skel | Morphology: Apply Skeletonize | Morphology#Applying_the_algorithm | Morphology#Applying the algorithm | NO |
Edge022 | Edge Detection:EdgeNMSuppression dialog box | Edge_Detection:_Zero_X_Non-Maximum_Suppression#Applying_the_Zero_X_Non-Maximum_Suppression_algorithm | Edge Detection: Zero X Non-Maximum Suppression#Applying the Zero X Non-Maximum Suppression_algorithm | NO |
U4017 | Utilities:RGB->Gray | Converting_image_datasets_to_different_data_types#Converting_RGB_datasets_to_grayscale_datasets | Converting image datasets to different data types#Converting RGB datasets to grayscale datasets | NO |
19014 | Face Anonymizer (BET) | Face_Anonymizer_(BET)#Applying_the_Face_Anonymizer_Algorithm | Face Anonymizer (BET)#Applying the Face Anonymizer Algorithm | NO |
19018 | Registration: B-Spline Automatic Registration 2D/3D -- Two-Pass | User_Dialogs_in_MIPAV#B-Spline_Two_-_Pass_Automatic_Registration_2.5D_dialog_box | User Dialogs in MIPAV#B-Spline Two - Pass Automatic Registration 2.5D dialog box | NO |
19016 | Registration: B-Spline Automatic Registration 2D/3D -- Single-Pass | User_Dialogs_in_MIPAV#B-Spline_Single_-_Pass_Automatic_Registration_2D.2F3D_dialog_box | User Dialogs in MIPAV#B-Spline Single - Pass Automatic Registration 2D.2F3D dialog box | NO |
19022 | Registration: B-Spline Automatic Registration 2.5D -- Two-Pass | User_Dialogs_in_MIPAV#B-Spline_Two_-_Pass_Automatic_Registration_2.5D_dialog_box | User Dialogs in MIPAV#B-Spline Two - Pass Automatic Registration 2.5D dialog box | NO |
19020 | Registration: B-Spline Automatic Registration 2.5D -- Single-Pass | User_Dialogs_in_MIPAV#B-Spline_Single_-_Pass_Automatic_Registration_2.5D_dialog_box | User Dialogs in MIPAV#B-Spline Single - Pass Automatic Registration 2.5D dialog box | NO |
10095 | Microscopy: FRET Bleed Through | Microscopy:_Fluorescent_Resonance_Energy_Transfer_(FRET)_Bleed_Through_and_Efficiency#FRET_Bleed_Through_dialog_box | Microscopy: Fluorescent Resonance Energy Transfer (FRET) Bleed Through and Efficiency#FRET Bleed Through dialog box | NO |
10247 | Customizing MIPAV | Customizing_MIPAV | Customizing MIPAV | NO |
10033 | Registration: Landmark-TPSpline: Applying the algorithm | Registration:_Landmark-TPSpline#Applying_the_Registration:_Landmark-TPSpline_algorithm | Registration: Landmark-TPSpline#Applying the Registration: Landmark-TPSpline algorithm | NO |
Mor003Er1 | Applying the erosion | Morphology#Applying_the_erosion | Morphology#Applying the erosion | NO |
WShed10 | Segmentation>Watershed | Watershed | Watershed | NO |
10088 | Filters (Spatial): Regularized Isotropic Diffusion: Applying the algorithm | Filters_(Spatial):_Regularized_Isotropic_(Nonlinear)_Diffusion#Applying_Regularized_Isotropic_.28Nonlinear.29_Diffusion | Filters (Spatial): Regularized Isotropic (Nonlinear) Diffusion#Applying Regularized Isotropic .28Nonlinear.29 Diffusion | NO |
GroupStat001 | N/A | N/A | N/A | |
Haral1001 | N/A | N/A | N/A | |
Mor004OP1 | Morphology: Applying the opening | Morphology#Open | Morphology#Open | NO |
19010 | Histogram Matching | Histogram_Matching#Applying_the_Histogram_Matching_algorithm | Histogram Matching#Applying the Histogram Matching algorithm | NO |
19054 | Histogram Tools: Histogram Two Dimensional - Color images dialog | 2D_Histogram#Applying_the_2D_Histogram_algorithm_to_color_images | 2D Histogram#Applying the 2D Histogram algorithm to color images | NO |
19052 | Histogram Tools: Histogram Two Dimensional - Grayscale images dialog | 2D_Histogram#Applying_the_2D_Histogram_algorithm_to_grayscale_images | 2D Histogram#Applying the 2D Histogram algorithm to grayscale images | NO |
U4053 | Utilities:Insert missing slices | Slice_tools#Insert_Missing_Slices | Slice tools#Insert Missing Slices | NO |
U4055 | Utilities:Insert slice | Slice_tools#Applying_insert_missing_slices | Slice tools#Applying insert missing slices | NO |
U4059 | Utilities:Remove slices | Inserting_slices_into_image_datasets#Removing_images_.28slices.29_from_datasets | Inserting slices into image datasets#Removing images .28slices.29 from datasets | NO |
PT0007 | Paint Power Tools dialog box | Segmenting_Images_Using_Contours_and_Masks:_Advanced_paint_and_Power_Paint_tools | Segmenting Images Using Contours and Masks: Advanced paint and Power Paint tools | NO |
10011 | Filters (Spatial): Gradient Magnitude: Applying the algorithm | Filters_(Spatial):_Gradient_Magnitude#Applying_the_Gradient_Magnitude_algorithm | Filters (Spatial): Gradient Magnitude#Applying the Gradient Magnitude algorithm | NO |
Mor011IDO | Morphology: Apply ID Objects | Morphology#ID_objects | Morphology#ID objects | NO |
10026 | Fuzzy C-Means: Multispectral and Single Channel Algorithms | Fuzzy_C-Means:_Multispectral_and_Single_Channel_Algorithms | Fuzzy C-Means: Multispectral and Single Channel Algorithms | NO |
HoughCircle002 | Hough Transform | Hough_Transform#Running_the_Hough_Transform_for_Circle_Detection_algorithm | Hough Transform#Running the Hough Transform for Circle Detection algorithm | NO |
HoughLine001 | Hough Transform: Line | Hough_Transform#Running_the_Hough_Transform_for_Line_Filing_algorithm | Hough Transform#Running the Hough Transform for Line Filing algorithm | NO |
HoughPar004 | Hough Transform: Parabola | Hough_Transform#Running_the_Hough_Transform_for_Parabola_Detection_algorithm | Hough Transform#Running the Hough Transform for Parabola Detection algorithm | NO |
HoughHyperbola001 | Hough Transform: Hyperbola | N/A | N/A | NOT USED |
10083 | Microscopy: FRAP | Microscopy:_FRAP_(Fluorescence_Recovery_After_Photobleaching)#Applying_the_FRAP_algorithm | Microscopy: FRAP (Fluorescence Recovery After Photobleaching)#Applying the FRAP algorithm | NO |
Hist010Cum | Cumulative Histogram | Cumulative_Histogram#Applying_Cumulative_Histogram_algorithm_to_images | Cumulative Histogram#Applying Cumulative Histogram algorithm to images | NOT USED |
U4041 | Utilities: Pad | Pad | Pad | NO |
10034 | Reslice-Isotropic Voxels | Reslice-Isotropic_Voxels | Reslice-Isotropic Voxels | NO |
Mor008ES | Morphology: Apply Evaluate Segmentation | Morphology#Applying_evaluate_segmentation | Morphology#Applying evaluate segmentation | NO |
Mor009FH | Morphology: Apply Fill Holes | Morphology#Applying_fill_holes | Morphology#Applying fill holes | NO |
ISPImages01 | N/A | N/A | N/A | NO |
Edge020 | Edge Detection: Edge Laplacian dialog box | Edge_Detection:_Zero_X_Laplacian | Edge Detection: Zero X Laplacian | NO |
Edge022 | Edge Detection: EdgeNMSuppression dialog box | Edge_Detection:_Zero_X_Non-Maximum_Suppression#Applying_the_Zero_X_Non-Maximum_Suppression_algorithm | Edge Detection: Zero X Non-Maximum Suppression#Applying the Zero X Non-Maximum Suppression algorithm | NO |
19003 | Microscopy: Blind Deconvolution algorithm | Microscopy:_Blind_Deconvolution#Applying_the_Maximum_Likelihood_Iterative_Blind_Deconvolution_algorithm | Microscopy: Blind Deconvolution#Applying the Maximum Likelihood Iterative Blind Deconvolution algorithm | NO |
10045 | Extract Brain Surface: Applying the algorithm | Extract_Brain:_Extract_Brain_Surface_(BET) | Extract Brain: Extract Brain Surface (BET) | NO |
U4043 | Utilities: Quantify Mask | Quantify_Mask | Quantify Mask | NO |
U4033 | Utilities: Image Math | Image_Math | Image Math | NO |
U4037 | Utilities: Match Images | Matching_images | Matching images | NO |
U4025 | Utilities: Fill image | Masking_(filling)_images | Masking (filling) images | NO |
U4027 | Utilities: Flip Image | Flipping_images | Flipping images | NO |
U4045 | Utilities: Replace Pixel/Voxel Value | Replacing_pixel/voxel_value_in_images | Replacing pixel/voxel value in images | NO |
10009 | Filters (Spatial): Gaussian Blur: Applying the algorithm | [[Filters_(Spatial):_Gaussian_Blur | Filters (Spatial): Gaussian Blur]] | NO |
19040 | Transformation tools: Transnform to Power of 2, Resample dialog | Transform_to_power_of_2#Resample_dialog_box | Transform to power of 2#Resample dialog box | NO |
CMNCC001 | Transform: Conformal Mapping Algorithms:Nearly Circle to Circle algorithm | Transform:_Conformal_Mapping_Algorithms#Applying_the_Nearly_Circle_to_Circle_algorithm | Transform: Conformal Mapping Algorithms#Applying the Nearly Circle to Circle algorithm | YES |
CMSR001 | Transform: Conformal Mapping Algorithms:Circular Sector to Rectangle | Transform:_Conformal_Mapping_Algorithms#Circular_Sector_to_Rectangle | Transform: Conformal Mapping Algorithms#Circular Sector to Rectangle | YES |
CMEC001 | Transform: Conformal Mapping Algorithms:Ellipse to Circle algorithm | Transform:_Conformal_Mapping_Algorithms#Transformation:_Ellipse_to_Circle | Transform: Conformal Mapping Algorithms#Transformation: Ellipse to Circle | NOT USED |
CMCR001 | Transform: Conformal Mapping Algorithms:Circle to Rectangle algorithm | Transform:_Conformal_Mapping_Algorithms#Applying_the_Circle_to_Rectangle_algorithm | Transform: Conformal Mapping Algorithms#Applying the Circle to Rectangle algorithm | YES |
10703 | Creating scripts | Using_Scripts_(Macros)_in_MIPAV | Using Scripts (Macros) in MIPAV | NO |
10093 | Filters (Spatial): Mode: Applying the algorithm | Filters_(Spatial):_Mode#Applying_the_Mode_algorithm | Filters (Spatial): Mode#Applying the Mode algorithm` | NO |
MS00001 | Applying the Muscle Segmentation algorithm | Muscle_Segmentation#Applying_the_algorithm | Muscle Segmentation#Applying the algorithm | YES |
MS00050 | Muscle Segmentation:Abdomen tab | Muscle_Segmentation#Applying_the_algorithm | Muscle Segmentation#Applying the algorithm | YES |
MS00040 | Muscle Segmentation:Analysis tab | Muscle_Segmentation#Applying_the_algorithm | Muscle Segmentation#Applying the algorithm | YES |
MS00080 | Muscle Segmentation:Analysis tab | Muscle_Segmentation#Applying_the_algorithm | Muscle Segmentation#Applying the algorithm | YES |
102572 | Annotation dialog box | Creating_new_images#Annotating_images_with_text | Creating new images#Annotating images with text | NO |
QS5020 | Annotation dialog box | Creating_new_images#Annotating_images_with_text | Creating new images#Annotating images with text | NOT USED (2 IDS for the same topic) |
19001 | Extract Surface (Marching Cubes) Algorithm | Extract_Surface_(Marching_Cubes)#Applying_the_Extract_Surface_Algorithm | Extract Surface (Marching Cubes)#Applying the Extract Surface Algorithm | NO |
10017 | Filters (Spatial): Median: Applying the algorithm | Filters_(Spatial):_Median#Applying_the_Median_Filter_algorithm | Filters (Spatial): Median#Applying the Median Filter algorithm | NO |
10015 | Filters (Spatial): Mean: Applying the algorithm | Filters_(Spatial):_Mean#Applying_the_Mean_algorithm | Filters (Spatial): Mean#Applying the Mean algorithm | NO |
ISPImages01 | NDAR | N/A | N/A | N/A |
19074 | Segmentation:Threshold | Threshold | Threshold | NO |
10091 | Quick Start: To allocate more memory | Allocating_Memory_in_MIPAV | Allocating Memory in MIPAV | NO |
10715 | Quick Start: To run scripts from the File menu (group mode) | Running_scripts | Running scripts | NO |
10097 | Microscopy: FRET Efficiency) | Microscopy:_Fluorescence_Resonance_Energy_Transfer_(FRET)-Acceptor#Applying_the_FRET_algorithm | Microscopy: Fluorescence Resonance Energy Transfer (FRET)-Acceptor#Applying the FRET algorithm | NO |
10079 | Utilities:Removing images (slices) from datasets (Remove Slices command) | Inserting_slices_into_image_datasets#Removing_images_.28slices.29_from_datasets | Inserting slices into image datasets#Removing images .28slices.29 from datasets | NO |
10231 | Calculating VOI statistics | Calculating_statistics_on_VOI_groups | Calculating statistics on VOI groups | NO |
GroupStat001 | Calculating VOI statistics | Calculating_statistics_on_VOI_groups | Calculating statistics on VOI groups | NO |
10025 | Filters (Spatial): Unsharp Mask: Applying the algorithm | Filters_(Spatial):_Unsharp_Mask | Filters_(Spatial):_Unsharp_Mask | NO |
A3001 | Histogram summary | Histogram_summary | Histogram summary | NO |
13010 | Talairach Transform dialog box | Mapping_Brains_in_Talairach_Space | Mapping Brains in Talairach Space | NO |
10013 | Filters (Spatial): Laplacian: Applying the algorithm | Filters_(Spatial)_Laplacian#Applying_the_Laplacian_algorithm | Filters (Spatial) Laplacian#Applying the Laplacian algorithm | NO |
10019 | Filters (Spatial): Nonlinear Noise Reduction: Applying the algorithm | Filters_(Spatial):_Nonlinear_Noise_Reduction#Applying_the_algorithm | Filters (Spatial): Nonlinear Noise Reduction#Applying the algorithm | NO |
StDev001 | Standard Deviation Threshold: Applying the algorithm to grayscale images | Standard_Deviation_Threshold#Applying_the_algorithm_to_grayscale_images | Standard Deviation Threshold#Applying the algorithm to grayscale images | NO |
StDev005 | Standard Deviation Threshold: Applying the algorithm to RGB images | Standard_Deviation_Threshold#Applying_the_algorithm_to_grayscale_images | Standard Deviation Threshold#Applying the algorithm to RGB images | NO |
U4031 | Utilities: Image Calculator: Enter Advanced Operator dialog box | Image_Calculator:_Advanced_image_calculator_options#Enter_Advanced_Operator_dialog_box | Image Calculator: Advanced image calculator options#Enter Advanced Operator dialog box | NO |
U4063 | Utilities: Subtract VOI Background | Subtract_VOI_Background | Subtract VOI Background | NO |
PT0003 | Paint tools: Multiple paint tools dialog box | Segmenting_Images_Using_Contours_and_Masks:_Advanced_paint_and_Power_Paint_tools#Multiple_Paint_Tools_dialog_box_options | Segmenting Images Using Contours and Masks: Advanced paint and Power Paint tools#Multiple Paint Tools dialog box options | NO |
Mor007DM | Morphology: Apply Distance map | Morphology#Distance_Map | Morphology#Distance Map | NO |
19006 | Shading Correction Inhomogeneity N3 Correction applying | Shading_Correction:_Inhomogeneity_N3_Correction#Applying_the_Inhomogeneity_N3_algorithm | Shading Correction: Inhomogeneity N3 Correction#Applying the Inhomogeneity N3 algorithm | NO |
More MapIDs used
These MAP IDs were under "MapIDs used, but no wiki:", but I either figure out the corresponding pages for these IDs, or created stub pages.
MAP ID | Algorithm | URL | TOPIC NAME (WIKI link) |
Needs cleaning/writing? |
102572 | Annotation dialog box | Creating_new_images#To_annotate_images_with_text: | Creating new images#To annotate images with text: | NO |
Transform010 | Transforming images | Transform | Transform | YES |
DTI00010 | DTI: Create List File | DTI:_Create_List_File | DTI: Create List File | YES |
CrMPmaps001 | PlugInDialogNEIRetinalRegistration | NEIRetinalRegistration | NEIRetinalRegistration | NO |
AnMPmaps002 | NEIRetinalRegistration | NEIRetinalRegistration | NEIRetinalRegistration | NO |
10021 | Filters (Spatial): Nonmaximum Suppression: Applying the algorithm | Filters_(Spatial):_Nonmaximum_Suppression#Applying_the_Nonmaximum_Suppression_algorithm | Filters (Spatial): Nonmaximum Suppression#Applying the Nonmaximum Suppression algorithm | NO |
PaintGrow001 | Creating a mask using the paint grow segmentation method | Creating_a_mask_using_the_Paint_Grow_Segmentation_method | Creating a mask using the Paint Grow Segmentation method | NO |
10526 | Creating a mask using the paint grow segmentation method | Creating_a_mask_using_the_Paint_Grow_Segmentation_method | Creating a mask using the Paint Grow Segmentation method | This is a MAP ID from File:MAP IDs.pdf |
Mor012PA | Apply Particle Analysis | Morphology#Applying_particle_analysis | Morphology#Applying particle analysis | NO |
10040 | Registration: Landmark—Least Squares | Registration:_Landmark-Least_Squares | Registration: Landmark-Least Squares | NO |
U4005 | Remove time volumes | 4_D_tools#Removing_time_volumes | 4 D tools#Removing time volumes | NO |
U4015 | Concatenate-> RGB | Converting_image_datasets_to_different_data_types#Concatenate-RGB | Converting image datasets to different data types#Concatenate-RGB | NO |
TransNon10 | Transformation tools: Transnform nonlinear | Transform_nonlinear | Transform nonlinear | YES |
Mor015UE | Apply Ultimate Erode | Morphology#Ultimate_erode | Morphology#Ultimate erode | NO |
WThresh01 | Applying the Wavelet Thresholding algorithm | Filters_(Wavelet):_Thresholding | Filters (Wavelet): Thresholding | NO |
HoughEllipse003 | Hough Transform for Ellipse Detection | Hough_Transform#Running_the_Hough_Transform_for_Ellipse_Detection_algorithm | Hough Transform#Running the Hough Transform for Ellipse Detection algorithm | NO |
U4051 | Utilities: Extract slices/volumes | Slice_tools#Extracting_slices_and_volumes | Slice tools#Extracting slices and volumes | NO |
FilFr010 | Fiters Frequency | Filters_(Frequency) | Filters (Frequency) | NO |
10096 | Microscopy: FRET Bleed Through: Applying the Algorithm | Microscopy:_Fluorescent_Resonance_Energy_Transfer_(FRET)_Bleed_Through_and_Efficiency#Applying_the_FRET_Bleed_Through_algorithm | Microscopy: Fluorescent Resonance Energy Transfer (FRET) Bleed Through and Efficiency#Applying the FRET Bleed Through algorithm | NO |
Haral1001 | Filters (Spatial): Haralick Texture | Filters_(Spatial):_Haralick_Texture | Filters (Spatial): Haralick Texture | YES |
MAP IDs in File:MAP IDs.pdf