Difference between revisions of "Map IDs"

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This page lists all map IDS used in MIPAV to connect software dialogs with MIPAV wiki pages.
 
This page lists all map IDS used in MIPAV to connect software dialogs with MIPAV wiki pages.
  
−
Note that the full URL contains the following:
+
Note that the full page URL contains the following prefix - 
−
http://mipav.cit.nih.gov/pubwiki/index.php/topic_name
+
[http://mipav.cit.nih.gov/pubwiki/index.php/ http://mipav.cit.nih.gov/pubwiki/index.php/]
 +
which should be added to the topic URL.
  
−
{|class="wikitable" style="text-align: center; color: #3300CC;"
+
 
−
|'''MAP ID'''||'''Algorithm'''||'''URL'''||'''TOPIC NAME (WIKI)'''||'''Needs cleaning/writing?'''
+
=== Map IDs used ===
−
|-
+
 
−
|DTI00010||N/A||N/A||N/A||N/A
+
{|class="wikitable" style="text-align: left; color: #3300CC;"
−
|-
+
|'''MAP ID'''||'''Algorithm'''||'''URL'''||'''TOPIC NAME<br/> (WIKI link)'''||'''Needs cleaning/writing?'''
−
|CrMPmaps001|| N/A||N/A||N/A||N/A
+
 
|-
 
|-
 
|MS00001|| PlugInMuscleImageDisplay||N/A||N/A||need to write
 
|MS00001|| PlugInMuscleImageDisplay||N/A||N/A||need to write
 
|-
 
|-
−
| MS00050|| PlugInMuscleImageDisplay542a ||N/A||N/A||need to write
+
|MS00050|| PlugInMuscleImageDisplay542a ||N/A||N/A||need to write
 
|-
 
|-
 
|10052||Microscopy>Colocalization> Orthogonal: Applying the algorithm||Microscopy_Colocalization_Orthogonal_Regression#Applying_the_algorithm || [[Microscopy Colocalization Orthogonal Regression]] || NO
 
|10052||Microscopy>Colocalization> Orthogonal: Applying the algorithm||Microscopy_Colocalization_Orthogonal_Regression#Applying_the_algorithm || [[Microscopy Colocalization Orthogonal Regression]] || NO
Line 26: Line 26:
 
|-
 
|-
 
|19050 ||2D Histogram||2D_Histogram||[[2D Histogram]]|| NO
 
|19050 ||2D Histogram||2D_Histogram||[[2D Histogram]]|| NO
 +
|-
 +
|10046||Registration: Manual 2D Series||Registration:_Manual_2D_Series||[[Registration: Manual 2D Series]]|| NO
 +
|-
 +
|10047||Registration: Manual 2D Series: Applying the algorithm|| Registration:_Manual_2D_Series#Applying_the_Manual_2D_Series_algorithm_on_2D_images ||[[Registration: Manual 2D Series#ApplyingOnTwoD|Applying the Manual 2D Series algorithm on 2D images]]||NOT USED
 +
|-
 +
|19060||Registration: Manual 2D Series: Blended tab||Registration:_Manual_2D_Series#Blended_tab||[[Registration: Manual 2D Series#BlendedTab| Blended tab]]||NOT USED
 +
|-
 +
|19062||Registration: Manual 2D Series: Blended tab||Registration:_Manual_2D_Series#Dual_tab||[[Registration: Manual 2D Series#DualTab| Dual tab]]||NOT USED
 +
|-
 +
|19064||Registration: Manual 2D Series: Applying the Manual 2D Series algorithm to 2.5D images||Registration:_Manual_2D_Series#Applying_the_Manual_2D_Series_algorithm_on_2.5_images|| [[Registration: Manual 2D Series#Applying25D|Applying the Manual 2D Series algorithm on 2.5 images]]|| NOT USED
 +
|- 
 +
|U4009 ||MIPAV Utilities: Add Image Margins ||Adding_image_margins||[[Adding image margins]]|| NO
 +
|- 
 +
|U4003 ||MIPAV Utilities: Extract 3d subset ||4_D_tools#Extracting_3D_subset_from_4D||[[4 D tools#Extracting 3D subset from 4D]]|| NO
 +
|-
 +
|10506 ||MIPAV Utilities: Contouring structures interactively ||Segmenting_Images_Using_Contours_and_Masks:_Using_contours_to_segment_a_VOI||[[Segmenting Images Using Contours and Masks: Using contours to segment a VOI#ContouringStructuresInteractively| Contouring Structures Interactively]]|| NO
 +
|-
 +
|10029||Histogram Equalization: Regional Adaptive: Applying the algorithm ||Histogram_Equalization:_Regional_Adaptive||[[Histogram Equalization: Regional Adaptive#ApplyingHistogramEqualizationRegionalAdaptive|Applying Histogram Equalization Regional Adaptive]]|| NO
 +
|-
 +
|10051||Histogram Equalization: Applying the neighborhood adaptive algorithm ||Histogram_Equalization:_Neighborhood_Adaptive||[[Histogram Equalization: Neighborhood Adaptive#ApplyingNeighborhoodAdaptive |Applying the neighborhood adaptive algorithm ]]|| NO
 +
|-
 +
|10007 ||Filters (Spatial): Anisotropic Diffusion: Applying the algorithm||Filters_(Spatial)_Anisotropic_Diffusion#Applying_the_Anisotropic_Diffusion_algorithm||[[Filters (Spatial) Anisotropic Diffusion#ApplyingAnisotropicDiffusion |Filters (Spatial) Anisotropic Diffusion- Applying the algorithm]]|| NO
 +
|-
 +
|Autocor001 ||Autocorrelation coefficients ||Autocorrelation_Coefficients||[[Autocorrelation Coefficients#ApplyingAutocorrelationCoefficients| Applying Autocorrelation Coefficients]]|| NO
 +
|-
 +
|Autocovar01 ||Autocovariance coefficients ||Autocovariance_Coefficients||[[Autocovariance Coefficients#ApplyingAutocovarianceCoefficients| Applying Autocovariance Coefficients]]|| NO
 +
|-
 +
|Barr010||Barrel distortion correction||Barrel_Distortion_Correction||[[Barrel Distortion Correction]]||NO
 +
|-
 +
|Mor001||Morphology: Background Distance map||Morphology#Background_Distance_map||[[Morphology#Background Distance map]]||NO
 +
|-
 +
|Mor010FE||Morphology: Apply find Edges||Morphology#Find_Edges||[[Morphology#Find_Edges]]||NO
 +
|-
 +
|10090||Extract Brain: Extract Brain Surface (BSE)||Extract_Brain:_Extract_Brain_Surface_(BSE)||[[Extract Brain: Extract Brain Surface (BSE)#ApplyingBSE| Applying BSE]]||NO
 +
|-
 +
|Smooth01 ||Smooth VOI ||Modifying_Contours#Smooth_VOI||[[Modifying Contours#Smooth VOI]]|| NO
 +
|-
 +
|10506 ||Contouring structures interactively ||Segmenting_Images_Using_Contours_and_Masks:_Using_contours_to_segment_a_VOI#Contouring_structures_interactively||[[Segmenting Images Using Contours and Masks: Using contours to segment a VOI#Contouring structures interactively]]|| NO
 +
|-
 +
|U4070 ||Utilities: Image Calculator-Bulk Images ||Image_Calculator:_Advanced_image_calculator_options#Image_Calculator-Bulk_Images||[[Image Calculator: Advanced image calculator options#Image Calculator-Bulk Images]]|| NO
 +
|-
 +
|CMCR001 ||Circle to Rectangle algorithm ||Transform:_Conformal_Mapping_Algorithms#Applying_the_Circle_to_Rectangle_algorithm||[[Transform: Conformal Mapping Algorithms#Applying the Circle to Rectangle algorithm]]|| YES
 +
|-
 +
|CMSR001 ||Circular Sector to Rectangle ||Transform:_Conformal_Mapping_Algorithms#Applying_the_Circular_Sector_to_Rectangle_algorithm||[[Transform: Conformal Mapping Algorithms#Applying the Circular Sector to Rectangle algorithm]]|| YES
 +
|-
 +
|Mor005Cl1 ||Morphology: Close: Applying the closing ||Morphology#Applying_the_closing||[[Morphology#Applying the closing]]|| NO
 +
|-
 +
|Mor002Dil ||Morphology: Dilation||Morphology#Dilate||[[Morphology#Dilate]]|| NO
 +
|-
 +
|10086 ||Filters (Spatial): Coherence-Enhancing Diffusion ||Filters_(Spatial):_Coherence-Enhancing_Diffusion#Applying_the_Coherence-Enhancing_Diffusion_algorithm||[[Filters (Spatial): Coherence-Enhancing Diffusion#Applying the Coherence-Enhancing Diffusion algorithm]]|| NO
 +
|-
 +
|U4049 ||Utilities: Concatenate Images ||Slice_tools#Concatenating_images||[[Slice tools#Concatenating images]]|| NO
 +
|-
 +
|U4001 ||Utilities: Convert from 3D to 4D ||4_D_tools#Converting_3D_to_4D_images_and_vise_versa||[[4 D tools#Converting 3D to 4D images and vise versa]]|| NO
 +
|- 
 +
|U4008 ||Utilities: Convert 4D to RGB ||4_D_tools#Convert_4D_to_RGB||[[4 D tools#Convert 4D to RGB]]|| NO
 +
|-
 +
|U4013 ||Utilities: Convert image types ||Converting_image_datasets_to_different_data_types||[[Converting image datasets to different data types]]|| NO
 +
|-
 +
|U4019 ||Utilities: DICOM: Save range of slices ||Converting_non-DICOM_image_files_to_DICOM_format#Save_Range_of_Slices_dialog_box||[[Converting non-DICOM image files to DICOM format#Save Range of Slices dialog box]]|| NO
 +
|-
 +
|U4021 ||Utilities: Crop ||Cropping_images||[[Cropping images]]|| NO
 +
|-
 +
|U4023 ||Utilities: Crop boundary pixels||Cropping_images#Crop_Boundary_Pixels||[[Cropping images#Crop Boundary Pixels]]|| NO
 +
|-
 +
|U4035||Utilities: Invert Image||Inverting_the_image||[[Inverting the image]]|| NO
 +
|-
 +
|U4039||Utilities: Additive noise||Adding_noise_to_images||[[Adding noise to images]]|| NO
 +
|-
 +
|OAR19076 ||Optimized Automatic Registration dialog box ||Optimized_automatic_registration_3D#Optimized_Automatic_Registration_dialog_box_options||[[Optimized automatic registration 3D#Optimized Automatic Registration dialog box options]]|| NO
 +
|-
 +
|OAR19078 ||Optimized Automatic Registration: Advanced OAR settings dialog box ||Optimized_automatic_registration_3D#Advanced_OAR_settings_for_Constrained_Optimized_Automatic_Registration_3D||[[Optimized automatic registration 3D#Advanced OAR settings for Constrained Optimized Automatic Registration 3D]]|| NO
 +
|-
 +
|ISPImages01 ||N/A ||N/A||[[N/A]]|| N/A
 +
|-
 +
|10003 ||Fast Fourier Transformation (FFT): Applying the FFT algorithm ||Fast_Fourier_Transformation_(FFT)#Applying_the_FFT_algorithm||[[Fast Fourier Transformation (FFT)#Applying the FFT algorithm]]|| NO
 +
|-
 +
|Mor006Del ||Morphology: Apply Delete Objects||Morphology#Applying_the_Delete_algorithm||[[Morphology#Applying the Delete algorithm]]|| NO
 +
|-
 +
|U4018 ||Utilities: To save DICOM images as XMl files||Correcting_image_spacing#To_save_DICOM_images_as_XML_files||[[Correcting image spacing#To save DICOM images as XML files]]|| YES (some images are lost)
 +
|-
 +
|10067 ||Subsampling images (Subsample command)||Subsampling_images||[[Subsampling images]]|| NO
 +
|-
 +
|10023 ||Filters (Spatial): Slice Averaging: Applying the algorithm||Filters_(Spatial):_Slice_Averaging||[[Filters (Spatial): Slice Averaging]]|| NO
 +
|-
 +
|U4029 ||Image Calculator||Image_Calculator||[[Image Calculator]]|| NO
 +
|-
 +
|Mor014Skel||Morphology: Apply Skeletonize||Morphology#Applying_the_algorithm||[[Morphology#Applying the algorithm]]|| NO
 +
|-
 +
|Edge022||Edge Detection:EdgeNMSuppression dialog box||Edge_Detection:_Zero_X_Non-Maximum_Suppression#Applying_the_Zero_X_Non-Maximum_Suppression_algorithm||[[Edge Detection: Zero X Non-Maximum Suppression#Applying the Zero X Non-Maximum Suppression_algorithm]]|| NO
 +
|-
 +
|U4017 ||Utilities:RGB->Gray||Converting_image_datasets_to_different_data_types#Converting_RGB_datasets_to_grayscale_datasets||[[Converting image datasets to different data types#Converting RGB datasets to grayscale datasets]]|| NO
 +
|-
 +
|19014||Face Anonymizer (BET)||Face_Anonymizer_(BET)#Applying_the_Face_Anonymizer_Algorithm||[[Face Anonymizer (BET)#Applying the Face Anonymizer Algorithm]]|| NO
 +
|-
 +
|19018||Registration: B-Spline Automatic Registration 2D/3D -- Two-Pass||User_Dialogs_in_MIPAV#B-Spline_Two_-_Pass_Automatic_Registration_2.5D_dialog_box||[[User Dialogs in MIPAV#B-Spline Two - Pass Automatic Registration 2.5D dialog box]]|| NO
 +
|-
 +
|19016 ||Registration: B-Spline Automatic Registration 2D/3D -- Single-Pass||User_Dialogs_in_MIPAV#B-Spline_Single_-_Pass_Automatic_Registration_2D.2F3D_dialog_box||[[User Dialogs in MIPAV#B-Spline Single - Pass Automatic Registration 2D.2F3D dialog box]]|| NO
 +
|- 
 +
|19022||Registration: B-Spline Automatic Registration 2.5D -- Two-Pass||User_Dialogs_in_MIPAV#B-Spline_Two_-_Pass_Automatic_Registration_2.5D_dialog_box||[[User Dialogs in MIPAV#B-Spline Two - Pass Automatic Registration 2.5D dialog box]]|| NO
 +
|-
 +
|19020||Registration: B-Spline Automatic Registration 2.5D -- Single-Pass||User_Dialogs_in_MIPAV#B-Spline_Single_-_Pass_Automatic_Registration_2.5D_dialog_box||[[User Dialogs in MIPAV#B-Spline Single - Pass Automatic Registration 2.5D dialog box]]|| NO
 +
|-
 +
|10095||Microscopy: FRET Bleed Through||Microscopy:_Fluorescent_Resonance_Energy_Transfer_(FRET)_Bleed_Through_and_Efficiency#FRET_Bleed_Through_dialog_box||[[Microscopy: Fluorescent Resonance Energy Transfer (FRET) Bleed Through and Efficiency#FRET Bleed Through dialog box]]|| NO
 +
|-
 +
|10247||Customizing MIPAV||Customizing_MIPAV||[[Customizing MIPAV]]|| NO
 +
|-
 +
|10033||Registration: Landmark-TPSpline: Applying the algorithm||Registration:_Landmark-TPSpline#Applying_the_Registration:_Landmark-TPSpline_algorithm||[[Registration: Landmark-TPSpline#Applying the Registration: Landmark-TPSpline algorithm]]|| NO
 +
|-
 +
|Mor003Er1 ||Applying the erosion||Morphology#Applying_the_erosion||[[Morphology#Applying the erosion]]|| NO
 +
|-
 +
|WShed10||Segmentation>Watershed||Watershed||[[Watershed]]|| NO
 +
|-
 +
|10088||Filters (Spatial): Regularized Isotropic Diffusion: Applying the algorithm||Filters_(Spatial):_Regularized_Isotropic_(Nonlinear)_Diffusion#Applying_Regularized_Isotropic_.28Nonlinear.29_Diffusion||[[Filters (Spatial): Regularized Isotropic (Nonlinear) Diffusion#Applying Regularized Isotropic .28Nonlinear.29 Diffusion]]|| NO
 +
|-
 +
|GroupStat001||N/A||N/A||N/A||
 +
|-
 +
|Haral1001||N/A||N/A||N/A||
 +
|-
 +
|Mor004OP1||Morphology: Applying the opening||Morphology#Open||[[Morphology#Open]]|| NO
 +
|-
 +
|19010||Histogram Matching||Histogram_Matching#Applying_the_Histogram_Matching_algorithm||[[Histogram Matching#Applying the Histogram Matching algorithm]]|| NO
 +
|-
 +
|19054||Histogram Tools: Histogram Two Dimensional - Color images dialog||2D_Histogram#Applying_the_2D_Histogram_algorithm_to_color_images||[[2D Histogram#Applying the 2D Histogram algorithm to color images]]|| NO
 +
|-
 +
|19052||Histogram Tools: Histogram Two Dimensional - Grayscale images dialog||2D_Histogram#Applying_the_2D_Histogram_algorithm_to_grayscale_images||[[2D Histogram#Applying the 2D Histogram algorithm to grayscale images]]|| NO
 +
|-
 +
|U4053||Utilities:Insert missing slices||Slice_tools#Insert_Missing_Slices||[[Slice tools#Insert Missing Slices]]|| NO
 +
|-
 +
|U4055||Utilities:Insert slice||Slice_tools#Applying_insert_missing_slices||[[Slice tools#Applying insert missing slices]]|| NO
 +
|-
 +
|U4059||Utilities:Remove slices||Inserting_slices_into_image_datasets#Removing_images_.28slices.29_from_datasets||[[Inserting slices into image datasets#Removing images .28slices.29 from datasets]]|| NO
 +
|-
 +
|PT0007||Paint Power Tools dialog box||Segmenting_Images_Using_Contours_and_Masks:_Advanced_paint_and_Power_Paint_tools||[[Segmenting Images Using Contours and Masks: Advanced paint and Power Paint tools]]|| NO
 +
|-
 +
|10011||Filters (Spatial): Gradient Magnitude: Applying the algorithm||Filters_(Spatial):_Gradient_Magnitude#Applying_the_Gradient_Magnitude_algorithm||[[Filters (Spatial): Gradient Magnitude#Applying the Gradient Magnitude algorithm]]|| NO
 +
|-
 +
|Mor011IDO||Morphology: Apply ID Objects||Morphology#ID_objects||[[Morphology#ID objects]]|| NO
 +
|-
 +
|10026||Fuzzy C-Means: Multispectral and Single Channel Algorithms||Fuzzy_C-Means:_Multispectral_and_Single_Channel_Algorithms||[[Fuzzy C-Means: Multispectral and Single Channel Algorithms]]|| NO
 +
|-
 +
|HoughCircle002||Hough Transform||Hough_Transform#Running_the_Hough_Transform_for_Circle_Detection_algorithm||[[Hough Transform#Running the Hough Transform for Circle Detection algorithm]]|| NO
 +
|-
 +
|HoughLine001||Hough Transform: Line||Hough_Transform#Running_the_Hough_Transform_for_Line_Filing_algorithm||[[Hough Transform#Running the Hough Transform for Line Filing algorithm]]|| NO
 +
|-
 +
|HoughPar004||Hough Transform: Parabola||Hough_Transform#Running_the_Hough_Transform_for_Parabola_Detection_algorithm||[[Hough Transform#Running the Hough Transform for Parabola Detection algorithm]]|| NO
 +
|-
 +
|HoughHyperbola001||Hough Transform: Hyperbola||N/A||N/A|| NOT USED
 +
|-
 +
|10083||Microscopy: FRAP||Microscopy:_FRAP_(Fluorescence_Recovery_After_Photobleaching)#Applying_the_FRAP_algorithm||[[Microscopy: FRAP (Fluorescence Recovery After Photobleaching)#Applying the FRAP algorithm]]|| NO
 +
|-
 +
|Hist010Cum||Cumulative Histogram||Cumulative_Histogram#Applying_Cumulative_Histogram_algorithm_to_images||[[Cumulative Histogram#Applying Cumulative Histogram algorithm to images]]|| NOT USED
 +
|-
 +
|U4041||Utilities: Pad||Pad||Pad|| NO
 +
|-
 +
|10034||Reslice-Isotropic Voxels||Reslice-Isotropic_Voxels||[[Reslice-Isotropic Voxels]]|| NO
 +
|-
 +
|Mor008ES||Morphology: Apply Evaluate Segmentation||Morphology#Applying_evaluate_segmentation||[[Morphology#Applying evaluate segmentation]]|| NO
 +
|-
 +
|Mor009FH||Morphology: Apply Fill Holes||Morphology#Applying_fill_holes||[[Morphology#Applying fill holes]]|| NO
 +
|-
 +
|ISPImages01||N/A||N/A||N/A|| NO
 +
|-
 +
|Edge020||Edge Detection: Edge Laplacian dialog box||Edge_Detection:_Zero_X_Laplacian||[[Edge Detection: Zero X Laplacian]]|| NO
 +
|-
 +
|Edge022||Edge Detection: EdgeNMSuppression dialog box||Edge_Detection:_Zero_X_Non-Maximum_Suppression#Applying_the_Zero_X_Non-Maximum_Suppression_algorithm||[[Edge Detection: Zero X Non-Maximum Suppression#Applying the Zero X Non-Maximum Suppression algorithm]]|| NO
 +
|-
 +
|19003||Microscopy: Blind Deconvolution algorithm||Microscopy:_Blind_Deconvolution#Applying_the_Maximum_Likelihood_Iterative_Blind_Deconvolution_algorithm||[[Microscopy: Blind Deconvolution#Applying the Maximum Likelihood Iterative Blind Deconvolution algorithm]]|| NO
 +
|-
 +
|10045||Extract Brain Surface: Applying the algorithm||Extract_Brain:_Extract_Brain_Surface_(BET)||[[Extract Brain: Extract Brain Surface (BET)]]|| NO
 +
|-
 +
|U4043||Utilities: Quantify Mask||Quantify_Mask||[[Quantify Mask]]|| NO
 +
|-
 +
|U4033||Utilities: Image Math||Image_Math||[[Image Math]]|| NO
 +
|-
 +
|U4037||Utilities: Match Images||Matching_images||[[Matching images]]|| NO
 +
|-
 +
|U4025||Utilities: Fill image||Masking_(filling)_images||[[Masking (filling) images]]|| NO
 +
|-
 +
|U4027||Utilities: Flip Image||Flipping_images||[[Flipping images]]|| NO
 +
|-
 +
|U4045||Utilities: Replace Pixel/Voxel Value||Replacing_pixel/voxel_value_in_images||[[Replacing pixel/voxel value in images]]|| NO
 +
|-
 +
|10009||Filters (Spatial): Gaussian Blur: Applying the algorithm||[[Filters_(Spatial):_Gaussian_Blur||Filters (Spatial): Gaussian Blur]]|| NO
 +
|-
 +
|19040||Transformation tools: Transnform to Power of 2, Resample dialog||Transform_to_power_of_2#Resample_dialog_box||[[Transform to power of 2#Resample dialog box]]|| NO
 +
|-
 +
|CMNCC001||Transform: Conformal Mapping Algorithms:Nearly Circle to Circle algorithm ||Transform:_Conformal_Mapping_Algorithms#Applying_the_Nearly_Circle_to_Circle_algorithm||[[Transform: Conformal Mapping Algorithms#Applying the Nearly Circle to Circle algorithm]]|| YES
 +
|-
 +
|CMSR001||Transform: Conformal Mapping Algorithms:Circular Sector to Rectangle||Transform:_Conformal_Mapping_Algorithms#Circular_Sector_to_Rectangle||[[Transform: Conformal Mapping Algorithms#Circular Sector to Rectangle]]|| YES
 +
|-
 +
|CMEC001||Transform: Conformal Mapping Algorithms:Ellipse to Circle algorithm||Transform:_Conformal_Mapping_Algorithms#Transformation:_Ellipse_to_Circle||[[Transform: Conformal Mapping Algorithms#Transformation: Ellipse to Circle]]|| NOT USED
 +
|-
 +
|CMCR001||Transform: Conformal Mapping Algorithms:Circle to Rectangle algorithm||Transform:_Conformal_Mapping_Algorithms#Applying_the_Circle_to_Rectangle_algorithm||[[Transform: Conformal Mapping Algorithms#Applying the Circle to Rectangle algorithm]]|| YES
 +
|-
 +
|10703||Creating scripts||Using_Scripts_(Macros)_in_MIPAV||[[Using Scripts (Macros) in MIPAV]]|| NO
 +
|-
 +
|10093||Filters (Spatial): Mode: Applying the algorithm||Filters_(Spatial):_Mode#Applying_the_Mode_algorithm||[[Filters (Spatial): Mode#Applying the Mode algorithm]]`|| NO
 +
|-
 +
|MS00001||Applying the Muscle Segmentation algorithm||Muscle_Segmentation#Applying_the_algorithm||[[Muscle Segmentation#Applying the algorithm]]||YES
 +
|-
 +
|MS00050||Muscle Segmentation:Abdomen tab||Muscle_Segmentation#Applying_the_algorithm||[[Muscle Segmentation#Applying the algorithm]]||YES
 +
|-
 +
|MS00040||Muscle Segmentation:Analysis tab||Muscle_Segmentation#Applying_the_algorithm||[[Muscle Segmentation#Applying the algorithm]]||YES
 +
|-
 +
|MS00080||Muscle Segmentation:Analysis tab||Muscle_Segmentation#Applying_the_algorithm||[[Muscle Segmentation#Applying the algorithm]]||YES
 +
|-
 +
|102572||Annotation dialog box||Creating_new_images#Annotating_images_with_text||[[Creating new images#Annotating images with text]]|| NO
 +
|-
 +
|QS5020||Annotation dialog box||Creating_new_images#Annotating_images_with_text||[[Creating new images#Annotating images with text]]|| NOT USED (2 IDS for the same topic)
 +
|-
 +
|19001||Extract Surface (Marching Cubes) Algorithm||Extract_Surface_(Marching_Cubes)#Applying_the_Extract_Surface_Algorithm||[[Extract Surface (Marching Cubes)#Applying the Extract Surface Algorithm]]|| NO
 +
|-
 +
|10017||Filters (Spatial): Median: Applying the algorithm||Filters_(Spatial):_Median#Applying_the_Median_Filter_algorithm||[[Filters (Spatial): Median#Applying the Median Filter algorithm]]|| NO
 +
|-
 +
|10015||Filters (Spatial): Mean: Applying the algorithm||Filters_(Spatial):_Mean#Applying_the_Mean_algorithm||[[Filters (Spatial): Mean#Applying the Mean algorithm]]|| NO
 +
|-
 +
|ISPImages01||NDAR||N/A||N/A|| N/A
 +
|-
 +
|19074||Segmentation:Threshold||Threshold||[[Threshold]]|| NO
 +
|-
 +
|10091||Quick Start: To allocate more memory||Allocating_Memory_in_MIPAV||[[Allocating Memory in MIPAV]]|| NO
 +
|-
 +
|10715||Quick Start: To run scripts from the File menu (group mode)||Running_scripts||[[Running scripts]]|| NO
 +
|-
 +
|10097||Microscopy: FRET Efficiency)||Microscopy:_Fluorescence_Resonance_Energy_Transfer_(FRET)-Acceptor#Applying_the_FRET_algorithm||[[Microscopy: Fluorescence Resonance Energy Transfer (FRET)-Acceptor#Applying the FRET algorithm]]|| NO
 +
|-
 +
|10079||Utilities:Removing images (slices) from datasets (Remove Slices command) ||Inserting_slices_into_image_datasets#Removing_images_.28slices.29_from_datasets||[[Inserting slices into image datasets#Removing images .28slices.29 from datasets]]|| NO
 +
|-
 +
|10231||Calculating VOI statistics||Calculating_statistics_on_VOI_groups||[[Calculating statistics on VOI groups]]|| NO
 +
|-
 +
|GroupStat001||Calculating VOI statistics||Calculating_statistics_on_VOI_groups||[[Calculating statistics on VOI groups]]|| NO
 +
|-
 +
|10025||Filters (Spatial): Unsharp Mask: Applying the algorithm||Filters_(Spatial):_Unsharp_Mask||[[Filters_(Spatial):_Unsharp_Mask]]|| NO
 +
|-
 +
|A3001||Histogram summary||Histogram_summary||[[Histogram summary]]|| NO
 +
|-
 +
|13010||Talairach Transform dialog box||Mapping_Brains_in_Talairach_Space||[[Mapping Brains in Talairach Space]]|| NO
 +
|-
 +
|10013||Filters (Spatial): Laplacian: Applying the algorithm||Filters_(Spatial)_Laplacian#Applying_the_Laplacian_algorithm||[[Filters (Spatial) Laplacian#Applying the Laplacian algorithm]]|| NO
 +
|-
 +
|10019||Filters (Spatial): Nonlinear Noise Reduction: Applying the algorithm||Filters_(Spatial):_Nonlinear_Noise_Reduction#Applying_the_algorithm||[[Filters (Spatial): Nonlinear Noise Reduction#Applying the algorithm]]|| NO
 +
|-
 +
|StDev001||Standard Deviation Threshold: Applying the algorithm to grayscale images||Standard_Deviation_Threshold#Applying_the_algorithm_to_grayscale_images||[[Standard Deviation Threshold#Applying the algorithm to grayscale images]]|| NO
 +
|-
 +
|StDev005||Standard Deviation Threshold: Applying the algorithm to RGB images||Standard_Deviation_Threshold#Applying_the_algorithm_to_grayscale_images||[[Standard Deviation Threshold#Applying the algorithm to RGB images]]|| NO
 +
|-
 +
|U4031||Utilities: Image Calculator: Enter Advanced Operator dialog box||Image_Calculator:_Advanced_image_calculator_options#Enter_Advanced_Operator_dialog_box||[[Image Calculator: Advanced image calculator options#Enter Advanced Operator dialog box]]|| NO
 +
|-
 +
|U4063||Utilities: Subtract VOI Background||Subtract_VOI_Background||[[Subtract VOI Background]]|| NO
 +
|-
 +
|PT0003||Paint tools: Multiple paint tools dialog box||Segmenting_Images_Using_Contours_and_Masks:_Advanced_paint_and_Power_Paint_tools#Multiple_Paint_Tools_dialog_box_options||[[Segmenting Images Using Contours and Masks: Advanced paint and Power Paint tools#Multiple Paint Tools dialog box options]]|| NO
 +
|-
 +
|Mor007DM||Morphology: Apply Distance map||Morphology#Distance_Map||[[Morphology#Distance Map]]|| NO
 +
|-
 +
|19006||Shading Correction Inhomogeneity N3 Correction applying||Shading_Correction:_Inhomogeneity_N3_Correction#Applying_the_Inhomogeneity_N3_algorithm||[[Shading Correction: Inhomogeneity N3 Correction#Applying the Inhomogeneity N3 algorithm]]|| NO
 +
|-
 +
|  ||  ||||||
 +
|}
 +
 +
=== More MapIDs used ===
 +
These MAP IDs were under "MapIDs used, but no wiki:", but I either figure out the corresponding pages for these IDs, or created stub pages.
 +
 +
{|class="wikitable" style="text-align: left; color: #3300CC;"
 +
|'''MAP ID'''||'''Algorithm'''||'''URL'''||'''TOPIC NAME<br/> (WIKI link)'''||'''Needs cleaning/writing?'''
 +
|-
 +
|102572||Annotation dialog box||Creating_new_images#To_annotate_images_with_text:|| [[Creating new images#To annotate images with text:]]|| NO
 +
|-
 +
|Transform010 ||Transforming images||Transform||[[Transform]]|| YES
 +
|-
 +
|DTI00010||DTI: Create List File||DTI:_Create_List_File||[[DTI: Create List File]]||YES
 +
|-
 +
|CrMPmaps001|| PlugInDialogNEIRetinalRegistration||NEIRetinalRegistration||[[NEIRetinalRegistration]]||NO
 +
|-
 +
|AnMPmaps002||NEIRetinalRegistration||NEIRetinalRegistration||[[NEIRetinalRegistration]]||NO
 +
|-
 +
|10021||Filters (Spatial): Nonmaximum Suppression: Applying the algorithm||Filters_(Spatial):_Nonmaximum_Suppression#Applying_the_Nonmaximum_Suppression_algorithm||[[Filters (Spatial): Nonmaximum Suppression#Applying the Nonmaximum Suppression algorithm]]||NO
 +
|-
 +
|PaintGrow001||Creating a mask using the paint grow segmentation method||Creating_a_mask_using_the_Paint_Grow_Segmentation_method||[[Creating a mask using the Paint Grow Segmentation method]]||NO
 +
|-
 +
|10526||Creating a mask using the paint grow segmentation method||Creating_a_mask_using_the_Paint_Grow_Segmentation_method||[[Creating a mask using the Paint Grow Segmentation method]]||This is a MAP ID from  [[File:MAP_IDs.pdf]]
 +
|-
 +
|Mor012PA||Apply Particle Analysis||Morphology#Applying_particle_analysis||[[Morphology#Applying particle analysis]]||NO
 +
|-
 +
|10040||Registration: Landmark—Least Squares||Registration:_Landmark-Least_Squares||[[Registration: Landmark-Least Squares]]||NO
 +
|-
 +
|U4005||Remove time volumes||4_D_tools#Removing_time_volumes||[[4 D tools#Removing time volumes]]||NO
 +
|-
 +
|U4015||Concatenate-> RGB||Converting_image_datasets_to_different_data_types#Concatenate-RGB||[[Converting image datasets to different data types#Concatenate-RGB]]||NO
 +
|-
 +
|TransNon10||Transformation tools: Transnform nonlinear||Transform_nonlinear||[[Transform nonlinear]]||YES
 +
|-
 +
|Mor015UE||Apply Ultimate Erode||Morphology#Ultimate_erode||[[Morphology#Ultimate erode]]||NO
 +
|-
 +
|WThresh01||Applying the Wavelet Thresholding algorithm||Filters_(Wavelet):_Thresholding||[[Filters (Wavelet): Thresholding]]||NO
 +
|-
 +
|HoughEllipse003||Hough Transform for Ellipse Detection||Hough_Transform#Running_the_Hough_Transform_for_Ellipse_Detection_algorithm||[[Hough Transform#Running the Hough Transform for Ellipse Detection algorithm]]||NO
 +
|-
 +
|U4051||Utilities: Extract slices/volumes||Slice_tools#Extracting_slices_and_volumes||[[Slice tools#Extracting slices and volumes]]||NO
 +
|-
 +
|FilFr010||Fiters Frequency||Filters_(Frequency)||[[Filters (Frequency)]]||NO
 +
|-
 +
|10096||Microscopy: FRET Bleed Through: Applying the Algorithm||Microscopy:_Fluorescent_Resonance_Energy_Transfer_(FRET)_Bleed_Through_and_Efficiency#Applying_the_FRET_Bleed_Through_algorithm||[[Microscopy: Fluorescent Resonance Energy Transfer (FRET) Bleed Through and Efficiency#Applying the FRET Bleed Through algorithm]]||NO
 +
|-
 +
|Haral1001||Filters (Spatial): Haralick Texture||Filters_(Spatial):_Haralick_Texture||[[Filters (Spatial): Haralick Texture]]||YES
 +
|-
 
|}
 
|}
  
 +
MAP IDs in  [[File:MAP_IDs.pdf|PDF]]
  
 
[[Category:Help]]
 
[[Category:Help]]

Latest revision as of 19:39, 26 September 2012

This page lists all map IDS used in MIPAV to connect software dialogs with MIPAV wiki pages.

Note that the full page URL contains the following prefix - http://mipav.cit.nih.gov/pubwiki/index.php/ which should be added to the topic URL.


Map IDs used

MAP ID Algorithm URL TOPIC NAME
(WIKI link)		 Needs cleaning/writing?
MS00001 PlugInMuscleImageDisplay N/A N/A need to write
MS00050 PlugInMuscleImageDisplay542a N/A N/A need to write
10052 Microscopy>Colocalization> Orthogonal: Applying the algorithm Microscopy_Colocalization_Orthogonal_Regression#Applying_the_algorithm Microscopy Colocalization Orthogonal Regression NO
10308 DICOM Posing_queries_and_retrieving_images Posing queries and retrieving images NO
10309 DICOM Receiving_and_sending_image_files Receiving and sending image files NO
10305 DICOM Sending_and_retrieving_DICOM_images#Creating.2C_editing.2C_and_deleting_servers Creating, editing, and deleting servers NO
10304 DICOM Sending_and_retrieving_DICOM_images#Setting_up_the_hosts_table Setting up the hosts table NO
19050 2D Histogram 2D_Histogram 2D Histogram NO
10046 Registration: Manual 2D Series Registration:_Manual_2D_Series Registration: Manual 2D Series NO
10047 Registration: Manual 2D Series: Applying the algorithm Registration:_Manual_2D_Series#Applying_the_Manual_2D_Series_algorithm_on_2D_images Applying the Manual 2D Series algorithm on 2D images NOT USED
19060 Registration: Manual 2D Series: Blended tab Registration:_Manual_2D_Series#Blended_tab Blended tab NOT USED
19062 Registration: Manual 2D Series: Blended tab Registration:_Manual_2D_Series#Dual_tab Dual tab NOT USED
19064 Registration: Manual 2D Series: Applying the Manual 2D Series algorithm to 2.5D images Registration:_Manual_2D_Series#Applying_the_Manual_2D_Series_algorithm_on_2.5_images Applying the Manual 2D Series algorithm on 2.5 images NOT USED
U4009 MIPAV Utilities: Add Image Margins Adding_image_margins Adding image margins NO
U4003 MIPAV Utilities: Extract 3d subset 4_D_tools#Extracting_3D_subset_from_4D 4 D tools#Extracting 3D subset from 4D NO
10506 MIPAV Utilities: Contouring structures interactively Segmenting_Images_Using_Contours_and_Masks:_Using_contours_to_segment_a_VOI Contouring Structures Interactively NO
10029 Histogram Equalization: Regional Adaptive: Applying the algorithm Histogram_Equalization:_Regional_Adaptive Applying Histogram Equalization Regional Adaptive NO
10051 Histogram Equalization: Applying the neighborhood adaptive algorithm Histogram_Equalization:_Neighborhood_Adaptive Applying the neighborhood adaptive algorithm NO
10007 Filters (Spatial): Anisotropic Diffusion: Applying the algorithm Filters_(Spatial)_Anisotropic_Diffusion#Applying_the_Anisotropic_Diffusion_algorithm Filters (Spatial) Anisotropic Diffusion- Applying the algorithm NO
Autocor001 Autocorrelation coefficients Autocorrelation_Coefficients Applying Autocorrelation Coefficients NO
Autocovar01 Autocovariance coefficients Autocovariance_Coefficients Applying Autocovariance Coefficients NO
Barr010 Barrel distortion correction Barrel_Distortion_Correction Barrel Distortion Correction NO
Mor001 Morphology: Background Distance map Morphology#Background_Distance_map Morphology#Background Distance map NO
Mor010FE Morphology: Apply find Edges Morphology#Find_Edges Morphology#Find_Edges NO
10090 Extract Brain: Extract Brain Surface (BSE) Extract_Brain:_Extract_Brain_Surface_(BSE) Applying BSE NO
Smooth01 Smooth VOI Modifying_Contours#Smooth_VOI Modifying Contours#Smooth VOI NO
10506 Contouring structures interactively Segmenting_Images_Using_Contours_and_Masks:_Using_contours_to_segment_a_VOI#Contouring_structures_interactively Segmenting Images Using Contours and Masks: Using contours to segment a VOI#Contouring structures interactively NO
U4070 Utilities: Image Calculator-Bulk Images Image_Calculator:_Advanced_image_calculator_options#Image_Calculator-Bulk_Images Image Calculator: Advanced image calculator options#Image Calculator-Bulk Images NO
CMCR001 Circle to Rectangle algorithm Transform:_Conformal_Mapping_Algorithms#Applying_the_Circle_to_Rectangle_algorithm Transform: Conformal Mapping Algorithms#Applying the Circle to Rectangle algorithm YES
CMSR001 Circular Sector to Rectangle Transform:_Conformal_Mapping_Algorithms#Applying_the_Circular_Sector_to_Rectangle_algorithm Transform: Conformal Mapping Algorithms#Applying the Circular Sector to Rectangle algorithm YES
Mor005Cl1 Morphology: Close: Applying the closing Morphology#Applying_the_closing Morphology#Applying the closing NO
Mor002Dil Morphology: Dilation Morphology#Dilate Morphology#Dilate NO
10086 Filters (Spatial): Coherence-Enhancing Diffusion Filters_(Spatial):_Coherence-Enhancing_Diffusion#Applying_the_Coherence-Enhancing_Diffusion_algorithm Filters (Spatial): Coherence-Enhancing Diffusion#Applying the Coherence-Enhancing Diffusion algorithm NO
U4049 Utilities: Concatenate Images Slice_tools#Concatenating_images Slice tools#Concatenating images NO
U4001 Utilities: Convert from 3D to 4D 4_D_tools#Converting_3D_to_4D_images_and_vise_versa 4 D tools#Converting 3D to 4D images and vise versa NO
U4008 Utilities: Convert 4D to RGB 4_D_tools#Convert_4D_to_RGB 4 D tools#Convert 4D to RGB NO
U4013 Utilities: Convert image types Converting_image_datasets_to_different_data_types Converting image datasets to different data types NO
U4019 Utilities: DICOM: Save range of slices Converting_non-DICOM_image_files_to_DICOM_format#Save_Range_of_Slices_dialog_box Converting non-DICOM image files to DICOM format#Save Range of Slices dialog box NO
U4021 Utilities: Crop Cropping_images Cropping images NO
U4023 Utilities: Crop boundary pixels Cropping_images#Crop_Boundary_Pixels Cropping images#Crop Boundary Pixels NO
U4035 Utilities: Invert Image Inverting_the_image Inverting the image NO
U4039 Utilities: Additive noise Adding_noise_to_images Adding noise to images NO
OAR19076 Optimized Automatic Registration dialog box Optimized_automatic_registration_3D#Optimized_Automatic_Registration_dialog_box_options Optimized automatic registration 3D#Optimized Automatic Registration dialog box options NO
OAR19078 Optimized Automatic Registration: Advanced OAR settings dialog box Optimized_automatic_registration_3D#Advanced_OAR_settings_for_Constrained_Optimized_Automatic_Registration_3D Optimized automatic registration 3D#Advanced OAR settings for Constrained Optimized Automatic Registration 3D NO
ISPImages01 N/A N/A N/A N/A
10003 Fast Fourier Transformation (FFT): Applying the FFT algorithm Fast_Fourier_Transformation_(FFT)#Applying_the_FFT_algorithm Fast Fourier Transformation (FFT)#Applying the FFT algorithm NO
Mor006Del Morphology: Apply Delete Objects Morphology#Applying_the_Delete_algorithm Morphology#Applying the Delete algorithm NO
U4018 Utilities: To save DICOM images as XMl files Correcting_image_spacing#To_save_DICOM_images_as_XML_files Correcting image spacing#To save DICOM images as XML files YES (some images are lost)
10067 Subsampling images (Subsample command) Subsampling_images Subsampling images NO
10023 Filters (Spatial): Slice Averaging: Applying the algorithm Filters_(Spatial):_Slice_Averaging Filters (Spatial): Slice Averaging NO
U4029 Image Calculator Image_Calculator Image Calculator NO
Mor014Skel Morphology: Apply Skeletonize Morphology#Applying_the_algorithm Morphology#Applying the algorithm NO
Edge022 Edge Detection:EdgeNMSuppression dialog box Edge_Detection:_Zero_X_Non-Maximum_Suppression#Applying_the_Zero_X_Non-Maximum_Suppression_algorithm Edge Detection: Zero X Non-Maximum Suppression#Applying the Zero X Non-Maximum Suppression_algorithm NO
U4017 Utilities:RGB->Gray Converting_image_datasets_to_different_data_types#Converting_RGB_datasets_to_grayscale_datasets Converting image datasets to different data types#Converting RGB datasets to grayscale datasets NO
19014 Face Anonymizer (BET) Face_Anonymizer_(BET)#Applying_the_Face_Anonymizer_Algorithm Face Anonymizer (BET)#Applying the Face Anonymizer Algorithm NO
19018 Registration: B-Spline Automatic Registration 2D/3D -- Two-Pass User_Dialogs_in_MIPAV#B-Spline_Two_-_Pass_Automatic_Registration_2.5D_dialog_box User Dialogs in MIPAV#B-Spline Two - Pass Automatic Registration 2.5D dialog box NO
19016 Registration: B-Spline Automatic Registration 2D/3D -- Single-Pass User_Dialogs_in_MIPAV#B-Spline_Single_-_Pass_Automatic_Registration_2D.2F3D_dialog_box User Dialogs in MIPAV#B-Spline Single - Pass Automatic Registration 2D.2F3D dialog box NO
19022 Registration: B-Spline Automatic Registration 2.5D -- Two-Pass User_Dialogs_in_MIPAV#B-Spline_Two_-_Pass_Automatic_Registration_2.5D_dialog_box User Dialogs in MIPAV#B-Spline Two - Pass Automatic Registration 2.5D dialog box NO
19020 Registration: B-Spline Automatic Registration 2.5D -- Single-Pass User_Dialogs_in_MIPAV#B-Spline_Single_-_Pass_Automatic_Registration_2.5D_dialog_box User Dialogs in MIPAV#B-Spline Single - Pass Automatic Registration 2.5D dialog box NO
10095 Microscopy: FRET Bleed Through Microscopy:_Fluorescent_Resonance_Energy_Transfer_(FRET)_Bleed_Through_and_Efficiency#FRET_Bleed_Through_dialog_box Microscopy: Fluorescent Resonance Energy Transfer (FRET) Bleed Through and Efficiency#FRET Bleed Through dialog box NO
10247 Customizing MIPAV Customizing_MIPAV Customizing MIPAV NO
10033 Registration: Landmark-TPSpline: Applying the algorithm Registration:_Landmark-TPSpline#Applying_the_Registration:_Landmark-TPSpline_algorithm Registration: Landmark-TPSpline#Applying the Registration: Landmark-TPSpline algorithm NO
Mor003Er1 Applying the erosion Morphology#Applying_the_erosion Morphology#Applying the erosion NO
WShed10 Segmentation>Watershed Watershed Watershed NO
10088 Filters (Spatial): Regularized Isotropic Diffusion: Applying the algorithm Filters_(Spatial):_Regularized_Isotropic_(Nonlinear)_Diffusion#Applying_Regularized_Isotropic_.28Nonlinear.29_Diffusion Filters (Spatial): Regularized Isotropic (Nonlinear) Diffusion#Applying Regularized Isotropic .28Nonlinear.29 Diffusion NO
GroupStat001 N/A N/A N/A
Haral1001 N/A N/A N/A
Mor004OP1 Morphology: Applying the opening Morphology#Open Morphology#Open NO
19010 Histogram Matching Histogram_Matching#Applying_the_Histogram_Matching_algorithm Histogram Matching#Applying the Histogram Matching algorithm NO
19054 Histogram Tools: Histogram Two Dimensional - Color images dialog 2D_Histogram#Applying_the_2D_Histogram_algorithm_to_color_images 2D Histogram#Applying the 2D Histogram algorithm to color images NO
19052 Histogram Tools: Histogram Two Dimensional - Grayscale images dialog 2D_Histogram#Applying_the_2D_Histogram_algorithm_to_grayscale_images 2D Histogram#Applying the 2D Histogram algorithm to grayscale images NO
U4053 Utilities:Insert missing slices Slice_tools#Insert_Missing_Slices Slice tools#Insert Missing Slices NO
U4055 Utilities:Insert slice Slice_tools#Applying_insert_missing_slices Slice tools#Applying insert missing slices NO
U4059 Utilities:Remove slices Inserting_slices_into_image_datasets#Removing_images_.28slices.29_from_datasets Inserting slices into image datasets#Removing images .28slices.29 from datasets NO
PT0007 Paint Power Tools dialog box Segmenting_Images_Using_Contours_and_Masks:_Advanced_paint_and_Power_Paint_tools Segmenting Images Using Contours and Masks: Advanced paint and Power Paint tools NO
10011 Filters (Spatial): Gradient Magnitude: Applying the algorithm Filters_(Spatial):_Gradient_Magnitude#Applying_the_Gradient_Magnitude_algorithm Filters (Spatial): Gradient Magnitude#Applying the Gradient Magnitude algorithm NO
Mor011IDO Morphology: Apply ID Objects Morphology#ID_objects Morphology#ID objects NO
10026 Fuzzy C-Means: Multispectral and Single Channel Algorithms Fuzzy_C-Means:_Multispectral_and_Single_Channel_Algorithms Fuzzy C-Means: Multispectral and Single Channel Algorithms NO
HoughCircle002 Hough Transform Hough_Transform#Running_the_Hough_Transform_for_Circle_Detection_algorithm Hough Transform#Running the Hough Transform for Circle Detection algorithm NO
HoughLine001 Hough Transform: Line Hough_Transform#Running_the_Hough_Transform_for_Line_Filing_algorithm Hough Transform#Running the Hough Transform for Line Filing algorithm NO
HoughPar004 Hough Transform: Parabola Hough_Transform#Running_the_Hough_Transform_for_Parabola_Detection_algorithm Hough Transform#Running the Hough Transform for Parabola Detection algorithm NO
HoughHyperbola001 Hough Transform: Hyperbola N/A N/A NOT USED
10083 Microscopy: FRAP Microscopy:_FRAP_(Fluorescence_Recovery_After_Photobleaching)#Applying_the_FRAP_algorithm Microscopy: FRAP (Fluorescence Recovery After Photobleaching)#Applying the FRAP algorithm NO
Hist010Cum Cumulative Histogram Cumulative_Histogram#Applying_Cumulative_Histogram_algorithm_to_images Cumulative Histogram#Applying Cumulative Histogram algorithm to images NOT USED
U4041 Utilities: Pad Pad Pad NO
10034 Reslice-Isotropic Voxels Reslice-Isotropic_Voxels Reslice-Isotropic Voxels NO
Mor008ES Morphology: Apply Evaluate Segmentation Morphology#Applying_evaluate_segmentation Morphology#Applying evaluate segmentation NO
Mor009FH Morphology: Apply Fill Holes Morphology#Applying_fill_holes Morphology#Applying fill holes NO
ISPImages01 N/A N/A N/A NO
Edge020 Edge Detection: Edge Laplacian dialog box Edge_Detection:_Zero_X_Laplacian Edge Detection: Zero X Laplacian NO
Edge022 Edge Detection: EdgeNMSuppression dialog box Edge_Detection:_Zero_X_Non-Maximum_Suppression#Applying_the_Zero_X_Non-Maximum_Suppression_algorithm Edge Detection: Zero X Non-Maximum Suppression#Applying the Zero X Non-Maximum Suppression algorithm NO
19003 Microscopy: Blind Deconvolution algorithm Microscopy:_Blind_Deconvolution#Applying_the_Maximum_Likelihood_Iterative_Blind_Deconvolution_algorithm Microscopy: Blind Deconvolution#Applying the Maximum Likelihood Iterative Blind Deconvolution algorithm NO
10045 Extract Brain Surface: Applying the algorithm Extract_Brain:_Extract_Brain_Surface_(BET) Extract Brain: Extract Brain Surface (BET) NO
U4043 Utilities: Quantify Mask Quantify_Mask Quantify Mask NO
U4033 Utilities: Image Math Image_Math Image Math NO
U4037 Utilities: Match Images Matching_images Matching images NO
U4025 Utilities: Fill image Masking_(filling)_images Masking (filling) images NO
U4027 Utilities: Flip Image Flipping_images Flipping images NO
U4045 Utilities: Replace Pixel/Voxel Value Replacing_pixel/voxel_value_in_images Replacing pixel/voxel value in images NO
10009 Filters (Spatial): Gaussian Blur: Applying the algorithm [[Filters_(Spatial):_Gaussian_Blur Filters (Spatial): Gaussian Blur]] NO
19040 Transformation tools: Transnform to Power of 2, Resample dialog Transform_to_power_of_2#Resample_dialog_box Transform to power of 2#Resample dialog box NO
CMNCC001 Transform: Conformal Mapping Algorithms:Nearly Circle to Circle algorithm Transform:_Conformal_Mapping_Algorithms#Applying_the_Nearly_Circle_to_Circle_algorithm Transform: Conformal Mapping Algorithms#Applying the Nearly Circle to Circle algorithm YES
CMSR001 Transform: Conformal Mapping Algorithms:Circular Sector to Rectangle Transform:_Conformal_Mapping_Algorithms#Circular_Sector_to_Rectangle Transform: Conformal Mapping Algorithms#Circular Sector to Rectangle YES
CMEC001 Transform: Conformal Mapping Algorithms:Ellipse to Circle algorithm Transform:_Conformal_Mapping_Algorithms#Transformation:_Ellipse_to_Circle Transform: Conformal Mapping Algorithms#Transformation: Ellipse to Circle NOT USED
CMCR001 Transform: Conformal Mapping Algorithms:Circle to Rectangle algorithm Transform:_Conformal_Mapping_Algorithms#Applying_the_Circle_to_Rectangle_algorithm Transform: Conformal Mapping Algorithms#Applying the Circle to Rectangle algorithm YES
10703 Creating scripts Using_Scripts_(Macros)_in_MIPAV Using Scripts (Macros) in MIPAV NO
10093 Filters (Spatial): Mode: Applying the algorithm Filters_(Spatial):_Mode#Applying_the_Mode_algorithm Filters (Spatial): Mode#Applying the Mode algorithm` NO
MS00001 Applying the Muscle Segmentation algorithm Muscle_Segmentation#Applying_the_algorithm Muscle Segmentation#Applying the algorithm YES
MS00050 Muscle Segmentation:Abdomen tab Muscle_Segmentation#Applying_the_algorithm Muscle Segmentation#Applying the algorithm YES
MS00040 Muscle Segmentation:Analysis tab Muscle_Segmentation#Applying_the_algorithm Muscle Segmentation#Applying the algorithm YES
MS00080 Muscle Segmentation:Analysis tab Muscle_Segmentation#Applying_the_algorithm Muscle Segmentation#Applying the algorithm YES
102572 Annotation dialog box Creating_new_images#Annotating_images_with_text Creating new images#Annotating images with text NO
QS5020 Annotation dialog box Creating_new_images#Annotating_images_with_text Creating new images#Annotating images with text NOT USED (2 IDS for the same topic)
19001 Extract Surface (Marching Cubes) Algorithm Extract_Surface_(Marching_Cubes)#Applying_the_Extract_Surface_Algorithm Extract Surface (Marching Cubes)#Applying the Extract Surface Algorithm NO
10017 Filters (Spatial): Median: Applying the algorithm Filters_(Spatial):_Median#Applying_the_Median_Filter_algorithm Filters (Spatial): Median#Applying the Median Filter algorithm NO
10015 Filters (Spatial): Mean: Applying the algorithm Filters_(Spatial):_Mean#Applying_the_Mean_algorithm Filters (Spatial): Mean#Applying the Mean algorithm NO
ISPImages01 NDAR N/A N/A N/A
19074 Segmentation:Threshold Threshold Threshold NO
10091 Quick Start: To allocate more memory Allocating_Memory_in_MIPAV Allocating Memory in MIPAV NO
10715 Quick Start: To run scripts from the File menu (group mode) Running_scripts Running scripts NO
10097 Microscopy: FRET Efficiency) Microscopy:_Fluorescence_Resonance_Energy_Transfer_(FRET)-Acceptor#Applying_the_FRET_algorithm Microscopy: Fluorescence Resonance Energy Transfer (FRET)-Acceptor#Applying the FRET algorithm NO
10079 Utilities:Removing images (slices) from datasets (Remove Slices command) Inserting_slices_into_image_datasets#Removing_images_.28slices.29_from_datasets Inserting slices into image datasets#Removing images .28slices.29 from datasets NO
10231 Calculating VOI statistics Calculating_statistics_on_VOI_groups Calculating statistics on VOI groups NO
GroupStat001 Calculating VOI statistics Calculating_statistics_on_VOI_groups Calculating statistics on VOI groups NO
10025 Filters (Spatial): Unsharp Mask: Applying the algorithm Filters_(Spatial):_Unsharp_Mask Filters_(Spatial):_Unsharp_Mask NO
A3001 Histogram summary Histogram_summary Histogram summary NO
13010 Talairach Transform dialog box Mapping_Brains_in_Talairach_Space Mapping Brains in Talairach Space NO
10013 Filters (Spatial): Laplacian: Applying the algorithm Filters_(Spatial)_Laplacian#Applying_the_Laplacian_algorithm Filters (Spatial) Laplacian#Applying the Laplacian algorithm NO
10019 Filters (Spatial): Nonlinear Noise Reduction: Applying the algorithm Filters_(Spatial):_Nonlinear_Noise_Reduction#Applying_the_algorithm Filters (Spatial): Nonlinear Noise Reduction#Applying the algorithm NO
StDev001 Standard Deviation Threshold: Applying the algorithm to grayscale images Standard_Deviation_Threshold#Applying_the_algorithm_to_grayscale_images Standard Deviation Threshold#Applying the algorithm to grayscale images NO
StDev005 Standard Deviation Threshold: Applying the algorithm to RGB images Standard_Deviation_Threshold#Applying_the_algorithm_to_grayscale_images Standard Deviation Threshold#Applying the algorithm to RGB images NO
U4031 Utilities: Image Calculator: Enter Advanced Operator dialog box Image_Calculator:_Advanced_image_calculator_options#Enter_Advanced_Operator_dialog_box Image Calculator: Advanced image calculator options#Enter Advanced Operator dialog box NO
U4063 Utilities: Subtract VOI Background Subtract_VOI_Background Subtract VOI Background NO
PT0003 Paint tools: Multiple paint tools dialog box Segmenting_Images_Using_Contours_and_Masks:_Advanced_paint_and_Power_Paint_tools#Multiple_Paint_Tools_dialog_box_options Segmenting Images Using Contours and Masks: Advanced paint and Power Paint tools#Multiple Paint Tools dialog box options NO
Mor007DM Morphology: Apply Distance map Morphology#Distance_Map Morphology#Distance Map NO
19006 Shading Correction Inhomogeneity N3 Correction applying Shading_Correction:_Inhomogeneity_N3_Correction#Applying_the_Inhomogeneity_N3_algorithm Shading Correction: Inhomogeneity N3 Correction#Applying the Inhomogeneity N3 algorithm NO

More MapIDs used

These MAP IDs were under "MapIDs used, but no wiki:", but I either figure out the corresponding pages for these IDs, or created stub pages.

MAP ID Algorithm URL TOPIC NAME
(WIKI link)		 Needs cleaning/writing?
102572 Annotation dialog box Creating_new_images#To_annotate_images_with_text: Creating new images#To annotate images with text: NO
Transform010 Transforming images Transform Transform YES
DTI00010 DTI: Create List File DTI:_Create_List_File DTI: Create List File YES
CrMPmaps001 PlugInDialogNEIRetinalRegistration NEIRetinalRegistration NEIRetinalRegistration NO
AnMPmaps002 NEIRetinalRegistration NEIRetinalRegistration NEIRetinalRegistration NO
10021 Filters (Spatial): Nonmaximum Suppression: Applying the algorithm Filters_(Spatial):_Nonmaximum_Suppression#Applying_the_Nonmaximum_Suppression_algorithm Filters (Spatial): Nonmaximum Suppression#Applying the Nonmaximum Suppression algorithm NO
PaintGrow001 Creating a mask using the paint grow segmentation method Creating_a_mask_using_the_Paint_Grow_Segmentation_method Creating a mask using the Paint Grow Segmentation method NO
10526 Creating a mask using the paint grow segmentation method Creating_a_mask_using_the_Paint_Grow_Segmentation_method Creating a mask using the Paint Grow Segmentation method This is a MAP ID from File:MAP IDs.pdf
Mor012PA Apply Particle Analysis Morphology#Applying_particle_analysis Morphology#Applying particle analysis NO
10040 Registration: Landmark—Least Squares Registration:_Landmark-Least_Squares Registration: Landmark-Least Squares NO
U4005 Remove time volumes 4_D_tools#Removing_time_volumes 4 D tools#Removing time volumes NO
U4015 Concatenate-> RGB Converting_image_datasets_to_different_data_types#Concatenate-RGB Converting image datasets to different data types#Concatenate-RGB NO
TransNon10 Transformation tools: Transnform nonlinear Transform_nonlinear Transform nonlinear YES
Mor015UE Apply Ultimate Erode Morphology#Ultimate_erode Morphology#Ultimate erode NO
WThresh01 Applying the Wavelet Thresholding algorithm Filters_(Wavelet):_Thresholding Filters (Wavelet): Thresholding NO
HoughEllipse003 Hough Transform for Ellipse Detection Hough_Transform#Running_the_Hough_Transform_for_Ellipse_Detection_algorithm Hough Transform#Running the Hough Transform for Ellipse Detection algorithm NO
U4051 Utilities: Extract slices/volumes Slice_tools#Extracting_slices_and_volumes Slice tools#Extracting slices and volumes NO
FilFr010 Fiters Frequency Filters_(Frequency) Filters (Frequency) NO
10096 Microscopy: FRET Bleed Through: Applying the Algorithm Microscopy:_Fluorescent_Resonance_Energy_Transfer_(FRET)_Bleed_Through_and_Efficiency#Applying_the_FRET_Bleed_Through_algorithm Microscopy: Fluorescent Resonance Energy Transfer (FRET) Bleed Through and Efficiency#Applying the FRET Bleed Through algorithm NO
Haral1001 Filters (Spatial): Haralick Texture Filters_(Spatial):_Haralick_Texture Filters (Spatial): Haralick Texture YES

MAP IDs in File:MAP IDs.pdf

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