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- 2D Histogram
- 3-D Surface Views
- Algorithms used to draw VOI
- Background
- Barrel Distortion Correction
- Changing the legends for functions
- Connecting to SRB BIRN
- Contributing code to MIPAV
- Conventions used in this guide
- Crontab notes
- DICOM Conformance
- DTI: Create List File
- DTI Color Display
- DTI Estimate tensor
- Documentation of MIPAV contributions by Geometric Tools
- Eclipse installation and configuration documentation
- Edge Detection: Zero X Laplacian
- Edge Detection: Zero X Non-Maximum Suppression
- Extract Brain: Extract Brain Surface (BET)
- Extract Brain: Extract Brain Surface (BSE)
- FAQ: Why do I get an exception when running MIPAV via X11 forwarding on Linux?
- Face Anonymizer (BET)
- Figure 1
- Filters (Frequency)
- Filters (Spatial): Adaptive Noise Reduction
- Filters (Spatial): Adaptive Path Smooth
- Filters (Spatial): Coherence-Enhancing Diffusion
- Filters (Spatial): Gaussian Blur
- Filters (Spatial): Gradient Magnitude
- Filters (Spatial): Haralick Texture
- Filters (Spatial): Kernel Regression
- Filters (Spatial): Local Normalization
- Filters (Spatial): Mean
- Filters (Spatial): Mode
- Filters (Spatial): Nonmaximum Suppression
- Filters (Spatial): Slice Averaging
- Filters (Spatial) Anisotropic Diffusion
- Filters (Wavelet): De-noising BLS GSM
- Filters (Wavelet): Thresholding
- Fuzzy C-Means: Multispectral and Single Channel Algorithms
- Glossary for MIPAV Help
- Histogram
- Histogram Equalization: Neighborhood Adaptive
- Histogram Equalization: Regional Adaptive
- Histogram Matching
- How this guide is organized
- Image overlays and composites
- Load and save profile
- MIPAV Script Recording
- MIPAV Script Running
- MIPAV change list 1.xx
- MIPAV change list 2.x
- MIPAV change list 3.x.x
- MIPAV change list 5.x.x
- MIPAV change list pre-1.0
- Making a MIPAV Algorithm JISTable
- Making a MIPAV Algorithm Scriptable
- Mask
- Matrix, Plot, LUT, VOI and Surface files
- Microscopy: Blind Deconvolution
- Microscopy: FRAP (Fluorescence Recovery After Photobleaching)
- Microscopy: Fluorescence Resonance Energy Transfer (FRET)-Acceptor
- Microscopy: Fluorescent Resonance Energy Transfer (FRET) Bleed Through and Efficiency
- Microscopy Colocalization Orthogonal Regression
- Midsagittal line alignment
- Mosaic Registration
- PlugInDialogCT MD.java
- PlugIn Algorithm Median (con't)
- PlugIn Algorithm Median (con't, part 4)
- References
- Registration: Landmark-Least Squares
- Registration: Landmark-TPSpline
- Registration: Manual 2D Series
- Registration: Time Series Optimized Automatic Registration
- Reslice-Isotropic Voxels
- Sample images
- Segmenting Images Using Contours and Masks: Advanced paint and Power Paint tools
- Shading Correction: Inhomogeneity N3 Correction
- Skills you need to perform tasks in MIPAV
- Standard Deviation Threshold
- Subsampling images
- Supported utilities
- TRE Scripts
- Technical Information
- Technical Support
- Threshold
- Using Shell scripting to lessen typing
- VOIs
- Viewing MIPAV news and updates
- Viewing the Talairach grid on Talairach images
- Volume 1, Basics
- Volume 2, Algorithms
- Where to find more information
- Who should use this guide
- Why can't I see the plugins I install in the menu?