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- Click on the links below for more information on MIPAV's features. [[File:RFA_c.png|thumb|RFA simulation in MIPAV]] [[File:Haptic.jpg|thumb|Photo ...2 KB (248 words) - 15:11, 25 April 2013
- patella. The images of hard tissues of the patient's knee were extracted from volumetric image data and are displayed with the entire data at the co ...866 B (145 words) - 20:14, 23 March 2009
- === nVidia cards verified to work with MIPAV's volume rendering tools === {| border="1" rules="all" cellpadding="5" |+ Table of nVidia cards verified ...2 KB (253 words) - 19:31, 13 June 2012
- ** Fixed the DICOM directory anonymizer's handling of directories ... of 2 automatically and fixed the algorithm's progress bar. ...21 KB (3,304 words) - 18:42, 25 March 2009
- ** Fixed some problems with the Tri-planar view's crosshairs when ... the last used directory, or use the user's home directory. ...14 KB (2,257 words) - 18:43, 25 March 2009
- * The Save As dialog (File -> Save image as) now defaults to the image ... * Many of MIPAV's keyboard shortcuts can now be used when an image ...56 KB (8,728 words) - 18:43, 25 March 2009
- includes automatically zipping the file(s), securely sending the zipped ... of three functions to optimize using Dykstra's method. (2D) ...27 KB (4,172 words) - 20:32, 31 January 2012
- reading extents/image data, not that we think it's a spectroscopy dataset. ** Added TrackVis file support. ** AFNI: Added afni implementation ...13 KB (2,034 words) - 16:08, 8 April 2013
- Each plugin's location in the GUI is actually determined by the following ... the hierarchical structure of your plugin's location using these headings. ...4 KB (535 words) - 20:19, 13 June 2012
- see the frame reference times along the graph's X axis, if they exist. ... now installs native libraries to enable MIPAV's Volume renderers and Minc2 support. ...48 KB (7,407 words) - 18:52, 20 July 2010
- All scriptable plugins are manipulated by MIPAV's script interface through whichever class extends JDialogScriptableBase. When this class is ...4 KB (626 words) - 15:23, 29 March 2016
- choosing Product Type: Quadro, the computer's OS and Product: Quadro FX 4800. ... choose Product type: 3D Vision, the computer's OS and the Product: 3D Vision ...6 KB (984 words) - 19:41, 13 June 2012
- and then press Window->Preferences. It's time to link to the MIPAV JRE. Navigate to the Installed JREs section you see in this picture, and ...2 KB (385 words) - 14:42, 26 May 2011
- shown in Running MIPAV within Eclipse. If that's already set up, start MIPAV and navigate to Plugins->Install Plugin. The dialog on the right will ...8 KB (1,144 words) - 19:27, 12 April 2022
- * Label is what appears on the action's box in JIST * Name is the unique ... in the scripting system (see the algorithm's setGUIFromParams()). ...7 KB (887 words) - 20:43, 24 May 2010
- * Sampling of MIPAV's features *MIPAV mailing list *Viewing MIPAV News and Updates *Supported Formats ** Graphical and file formats supported by MIPAV ...18 KB (2,233 words) - 19:26, 10 September 2013
- ). Varying s from 0.5 to 5.5 in steps of 0.5 blurs the other images ... VOI region(s) | rowspan="1" colspan="2" | Applies the algorithm to ...8 KB (1,199 words) - 18:17, 18 May 2012
- landmark points. After the landmark point is set, it's coordinates appear in the dialog box |- | Image:CreateACPCImageNumbers.jpg |} ...32 KB (4,383 words) - 16:01, 15 June 2012
- method to achieve research goals. MIPAV's flexibility becomes apparent ... in Talairach space demonstrates both: MIPAV's native ability to display and ...10 KB (1,315 words) - 15:48, 15 June 2012
- * Choo A L, Chang S E, Zengin-Bolatkale H, Ambrose N G, Loucks T M ... J. Liu, J. Senseney, C. Shea, L. Massacesi, S. Jacobson, A. Silva, D. Reich ...13 KB (1,794 words) - 20:26, 10 November 2014
- on your desktop. You can access most of MIPAV's features from the main menu bar. === Main and Output windows options=== {| border="1" cellpadding="5" ...8 KB (1,080 words) - 14:33, 4 June 2015
- ;; S = slope of the line ;; V= variance ;; C = covariance offset = \bar{y} - S (\bar {x}) ; Let n be the normal vector to the ...27 KB (4,061 words) - 19:01, 10 July 2012
- want to connect. Conversely, your computer's connection information must ... AE Title-Lists the title of the device's DICOM application entity ...29 KB (4,074 words) - 13:07, 26 July 2012
- For 2.5D images, the algorithm's window does not include the Blended ... K.S. Arun, T.S. Huang, and S.D. Blostein, "Least-Squares Fitting of ...46 KB (6,482 words) - 19:51, 11 July 2012
- of freedom: you can choose one of MIPAV's predefined shapes or create ... You can contour structures in images by selecting one of MIPAV's predefined ...16 KB (2,462 words) - 21:00, 20 February 2013
- It then processes each region by judging each pixel's location within this new histogram. Regardless of pixel value, the algorithm remaps the brightest ...11 KB (1,623 words) - 20:10, 20 July 2012
- The algorithm first collects a list of the pixel's neighbors, calculates ... as measured against a histogram of the pixel's neighbors until the algorithm ...15 KB (2,222 words) - 20:16, 20 July 2012
- G_{xx}(T,S)=E[(f_T - \mu_T)*(f_S - \mu_S)]=(E(f_T * f_S) - (\mu_T - \mu_S)) ... And for all T and S G_{xx} (T,S)=G_{xx}(S-T)=G_{xx}(t) Where t=S-T ...5 KB (785 words) - 15:17, 25 April 2013
- by David W. Shattuck. This is MIPAV's interpretation of the BSE process ... by a strong edge within an MRI of a patient's head. There are essentially ...11 KB (1,690 words) - 20:48, 20 July 2012
- Let's consider the original ellipse as having a tilt theta with the ... T_1 = \sin \left [\frac{\pi}{2*K(s)}* F(\frac{z}{\sqrt{s}},s) \right ] ...14 KB (2,226 words) - 15:18, 25 April 2013
- takes advantage of the programming language's intrinsic object-oriented capabilities ... with the study and patient information entity's (IE). Series-The series level ...100 KB (12,638 words) - 12:33, 26 July 2012
- MIPAV; and, depending on your computer's memory resources, you can open ... click the Select All Rows icon on the browser's toolbar. ...13 KB (1,883 words) - 13:06, 26 July 2012
- to receive images. Conversely, your computer's connection information should ... Indicates the physician(s) responsible for patient care at the time ...12 KB (1,682 words) - 13:08, 26 July 2012
- specific tags to display. You can also use MIPAV's anonymize feature to protect patient confidentiality. The anonymize feature allows you to delete information ...12 KB (1,805 words) - 13:11, 26 July 2012
- MIPAV's anonymize feature allows you to remove information from a selected subset of DICOM tags. The tags in this subset are those indicated ...16 KB (2,339 words) - 13:12, 26 July 2012
- Patient's Name (0010,0010) | Patient's full name. |- | Patient's Birth Date (0010,0030) ...24 KB (3,138 words) - 16:04, 9 August 2012
- Let's introduce two objects A and B in Z2 with components a (ai,aj ... edges or inner edges depending on the user's choise.The algorithm, first ...75 KB (10,831 words) - 14:13, 6 August 2012
- S = Original space between slices M = Number of original images O = Original image set origin N = New slice thickness To use the Correct Image ...10 KB (1,556 words) - 14:17, 7 May 2013
- Gaussian-weighted average of the original image's 8 neighboring pixels for 2D images or 26 neighboring voxels for 3D images. For example, subsampling ...3 KB (445 words) - 18:37, 18 May 2012
- from different basins meet or when the pixel's gray level reaches a certain ... the background pixels and initial region(s) using VOIs. At least two VOIs ...6 KB (977 words) - 14:07, 6 August 2012
- and utilities-performed on an image(s), check the Image level data provenance box. The history appears in the Image data provenance dialog box ...22 KB (3,536 words) - 20:34, 8 May 2013
- image are both images of the same brain, that's why the registration demonstrates ... are both the images of the same brain. That's why it shows a very good overall ...4 KB (511 words) - 11:56, 7 August 2012
- There are two algorithms Quantify Mask(s) and Quantify Using Mask that calculate Center of Mass, area (in resolutions), and number of pixels ...3 KB (459 words) - 13:00, 9 August 2012
- The algorithm applies to the selected VOI(s) region. |- | VOI region | rowspan="1" colspan="2" | The algorithm applies to the whole image. ...5 KB (816 words) - 13:04, 9 August 2012
- The Median filter algorithm replaces a target pixel's value with the ... only, select the VOI and then select VOI Region(s). #* Pixels that ...8 KB (1,206 words) - 19:38, 27 March 2013
- applies the algorithm to the whole image. VOI region(s)- applies the algorithm to the selected VOI(s). OK - applies the algorithm according to the ...3 KB (477 words) - 19:43, 28 March 2013
- than one image (e.g. you are applying algorithm(s) to Image 1, and then to Image 2), make sure that you add the same number of images under $image ...8 KB (1,264 words) - 16:45, 9 August 2012
- to an image, and then using it to test an algorithm's effectiveness in removing the noise |- | Image:AddingNoiseOriginal.jpg A | A is an original ...7 KB (1,018 words) - 16:53, 9 August 2012
- VOI region(s) | rowspan="1" colspan="2" | Applies the algorithm to the volumes (regions) delineated by the VOIs. |- | OK | rowspan="1" colspan="2" | ...4 KB (607 words) - 18:38, 24 May 2013
- VOI region(s) | rowspan="1" colspan="2" | Applies the algorithm to the volumes (regions) delineated by the VOIs. |- | OK | rowspan="1" colspan="2" | ...6 KB (909 words) - 17:20, 9 August 2012
- Uses the median of the pixel's 8 nearest neighbors in 2D images or ... center pixel itself, to estimate the pixel's correct value. This allows ...5 KB (665 words) - 19:01, 8 May 2013
- 4 If you want to remove a certain image(s), select it, and then press ... list press Browse, and then select the image(s) from your disk. ...7 KB (1,014 words) - 19:34, 27 March 2013
- This option allows to save a paint mask(s) to a file. It is useful ... Loads the saved mask(s) from a file. |- | Import from VOIs ...15 KB (2,334 words) - 19:42, 9 August 2012
- are addressed in detail in volume 2 of the User's Guide. == Understanding contours and masks == Before you indicate a volume of interest, it is ...3 KB (468 words) - 19:44, 9 August 2012
- field estimates at the n-th location, s -denotes standard deviation ... VOI region(s) | rowspan="1" colspan="2" | Applies the algorithm to ...18 KB (2,624 words) - 14:09, 13 August 2012
- in the fovea over time, comparing the pigment's absorption over time and how ... to analyze the MP map using the user defined VOI(s). == Registration == ...15 KB (2,322 words) - 13:06, 28 August 2012
- VOI region(s) | rowspan="1" colspan="2" | Applies the algorithm inside VOIs. Outside VOIs, the pixel values are unchanged. |- | OK ...4 KB (647 words) - 14:49, 21 August 2012
- user is asked to provide the output volume's desired resolutions and dimensions. ... the image will be rotated about the scanner's center, this choice is available ...15 KB (2,339 words) - 15:51, 25 April 2013
- in a new image frame. You can also press S on your keyboard to run the command. box to the initial values. You can also press S on your keyboard to run the command. ...18 KB (3,164 words) - 15:19, 19 September 2012
- and then upload that profile to use with other image(s). The Save Profile option allows to save current settings in a text file. The Save Default ...891 B (157 words) - 18:10, 7 November 2012
- * One can write one’s own plug-ins. * MIPAV algorithms are more mathematically ... 7. Manually remove bad pixel(s) from each calibrated science image ...22 KB (3,429 words) - 15:37, 22 August 2013
- corresponding to the smallest value(s) of the cost function are then ... corresponding to the smallest value(s) of the cost function are determined ...34 KB (4,861 words) - 16:34, 2 November 2012
- open the VOIs file for the extra opened image. Let's name the first opened image the source image and the second opened image the extra image. ...17 KB (2,511 words) - 19:27, 2 April 2013
- the underlying structure of the application's software design. ... === Sampling of MIPAV's features === MIPAV provides ready-made, general ...13 KB (1,812 words) - 12:52, 11 March 2013
- for requires a command and uses that command's return value as the boolean ... When there is more than one MIPAV application window running, it's ...12 KB (1,703 words) - 16:19, 12 March 2013
- ** Added DTI pre-processing step to resample T2 image to match B0 ... ** Fixed bug in handling of Full Powell's method checkbox in OAR 3 ...41 KB (6,332 words) - 20:42, 5 April 2013
- the problem. To add this to MIPAV's startup, go to the installation directory of MIPAV on the remote computer and open the file mipav.lax in ...2 KB (238 words) - 16:37, 22 May 2013
- c_vmxxxx.fre where xxxx is the location in mm's of the slice. There are 522 ... The matrix filedescribes the image's orientation, translations, offset ...54 KB (7,655 words) - 16:40, 13 January 2014
- vector file usually indicates the line segment's starting point, direction, and length. In MIPAV you can create geometrically shaped contours to indicate ...20 KB (2,972 words) - 19:13, 24 May 2013
- # brain image(s) in one of supported formats, # corresponding CSV files ... # the brain image(s) in one of supported formats, # the CSV file(s ...22 KB (3,478 words) - 13:05, 5 September 2013
- of plug-in hides MIPAV and displays its own image(s) with the action and algorithm handling specific to its frame. == To create a self-contained ...41 KB (4,593 words) - 12:10, 24 June 2013
- Installing simple plug-in programs merely copies files into the user's home directory. Windows' c:\Documents and Settings\<user ID>\mipav ...5 KB (558 words) - 12:08, 24 June 2013
- of the underlying structure of MIPAV's software design and data structure. Because plug-ins are written in Java, you should also have a basic ...1 KB (236 words) - 12:08, 24 June 2013
- MIPAV provides the following classes for developing plug-in programs: PlugInAlgorithm.class PlugInFile.class PlugInView.class Plug-in programs ...58 KB (6,774 words) - 12:09, 24 June 2013
- It can be a mixture of calls to MIPAV's API, C programs, Perl, ITK, etc. program. The following sample plug-in program(s) are included in MIPAV documentation ...75 KB (8,391 words) - 12:10, 24 June 2013
- dialog box, select either Whole image or VOI region(s). ... Displays the image's histogram count in log scale along the Y axis. ...17 KB (2,557 words) - 15:58, 12 July 2013
- element occupies the space provided by field(s) on a paper/electronic case ... # If there are no errors found in your CSV file(s), for each file ...13 KB (1,999 words) - 20:40, 21 August 2013
- Java Web Start application locally on a user's computer (Java runtime environment ... # a brain image(s) in one of supported formats, # a corresponding CSV ...8 KB (1,209 words) - 17:27, 26 July 2013
- table you can watch the progress of your submission(s). The table will update as file(s) are being uploaded to the system. For successful upload(s ...6 KB (895 words) - 13:04, 29 July 2013
- as a Java Web Start application on a user's computer (requires the Java ... from which you wish to download a dataset(s). If the study you wish to ...6 KB (936 words) - 18:48, 29 July 2013
- \overrightarrow {S_N} = ( \overrightarrow{S} \overrightarrow {V_N} ... \overrightarrow {S_T} = \overrightarrow {S} - \overrightarrow {S_N} ...18 KB (2,915 words) - 15:47, 15 January 2014
- To adjust the LUT, you open the Look-up Table window to modify the ... *VOI region(s) -To generate a histogram for the VOI region of the image ...27 KB (3,876 words) - 13:30, 26 March 2012
