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  1. Task 4, Transforming Talairach image and Talairach VOIs-1 to the original image‏‎ (2 revisions)
  2. PlugIn Algorithm Median (con't, part 3)‏‎ (2 revisions)
  3. Transform nonlinear‏‎ (2 revisions)
  4. Crontab notes‏‎ (2 revisions)
  5. Visualizing Images: Displaying images using the cine (movie) view‏‎ (2 revisions)
  6. Installing a plug-in‏‎ (2 revisions)
  7. Copying images using the Clone command‏‎ (2 revisions)
  8. Filters (Spatial): Haralick Texture‏‎ (2 revisions)
  9. Making a MIPAV Algorithm Scriptable‏‎ (2 revisions)
  10. Viewing the Talairach grid on Talairach images‏‎ (2 revisions)
  11. DTI: Create List File‏‎ (2 revisions)
  12. Combining scripts and other programs‏‎ (2 revisions)
  13. Filters (Spatial): Mode‏‎ (3 revisions)
  14. MIPAV Script Running‏‎ (3 revisions)
  15. Recording utilities usage with the history feature‏‎ (3 revisions)
  16. Task 5, Copying Talairach VOIs to segmented images‏‎ (3 revisions)
  17. PlugIn Algorithm Median (con't, part 4)‏‎ (3 revisions)
  18. Pad‏‎ (3 revisions)
  19. Supported algorithms‏‎ (3 revisions)
  20. Skills you need to perform tasks in MIPAV‏‎ (3 revisions)
  21. How this guide is organized‏‎ (3 revisions)
  22. Inverting the image‏‎ (3 revisions)
  23. Filters (Spatial): Kernel Regression‏‎ (3 revisions)
  24. Load and save profile‏‎ (3 revisions)
  25. Why can't I see the plugins I install in the menu?‏‎ (3 revisions)
  26. MIPAV change list pre-1.0‏‎ (3 revisions)
  27. Mapping Brains in Talairach Space‏‎ (3 revisions)
  28. How to specify the script name of a plugin‏‎ (3 revisions)
  29. Mask‏‎ (3 revisions)
  30. DTI Estimate tensor‏‎ (3 revisions)
  31. FAQ: How do I setup and use Active stereo display in MIPAV?‏‎ (4 revisions)
  32. Editing and deleting scripts‏‎ (4 revisions)
  33. Volume 2, Algorithms‏‎ (4 revisions)
  34. References‏‎ (4 revisions)
  35. Task 6, Calculating statistics on VOIs‏‎ (4 revisions)
  36. Setting up scripting‏‎ (4 revisions)
  37. Filters (Spatial): Gradient Magnitude‏‎ (4 revisions)
  38. Image Math‏‎ (4 revisions)
  39. Making a MIPAV Algorithm JISTable‏‎ (4 revisions)
  40. Maximum Intensity Projection‏‎ (4 revisions)
  41. Calculating the volume of masks‏‎ (4 revisions)
  42. Where to find more information‏‎ (4 revisions)
  43. MuscleSegmentation plugin‏‎ (4 revisions)
  44. Registration: Time Series Optimized Automatic Registration‏‎ (4 revisions)
  45. Visualizing Images: Displaying images using the link to another image view‏‎ (4 revisions)
  46. Who should use this guide‏‎ (4 revisions)
  47. Histogram‏‎ (4 revisions)
  48. Segmenting Images Using Contours and Masks:Converting VOI contours to masks‏‎ (4 revisions)
  49. Standard Deviation Threshold‏‎ (4 revisions)
  50. Reslice-Isotropic Voxels‏‎ (4 revisions)
  51. Visualizing Images: Displaying images using the surface renderer view‏‎ (4 revisions)
  52. PlugIn Algorithm Median (con't)‏‎ (4 revisions)
  53. Subsampling images‏‎ (4 revisions)
  54. Task 3, Segmenting the original image‏‎ (4 revisions)
  55. Histogram summary‏‎ (5 revisions)
  56. Developing and using scripts‏‎ (5 revisions)
  57. Sample images‏‎ (5 revisions)
  58. Filters (Spatial): Nonmaximum Suppression‏‎ (5 revisions)
  59. Generating graphs‏‎ (5 revisions)
  60. Using the mipav command‏‎ (5 revisions)
  61. Supported file formats‏‎ (5 revisions)
  62. Examples of MIPAV plug-ins‏‎ (5 revisions)
  63. Plug-in CT MD.java‏‎ (5 revisions)
  64. PlugInAlgorithmCT MD.java‏‎ (5 revisions)
  65. Replacing pixel/voxel value in images‏‎ (5 revisions)
  66. 2D Histogram‏‎ (5 revisions)
  67. TRE Scripts‏‎ (5 revisions)
  68. Threshold‏‎ (5 revisions)
  69. PlugIn Algorithm Median‏‎ (5 revisions)
  70. Filters (Spatial): Mean‏‎ (5 revisions)
  71. Segmenting Images Using Contours and Masks: Converting masks to VOI contours and paints‏‎ (5 revisions)
  72. FAQ: How can I fix a "Cannot load Java Virtual Machine" error (memory limit set too high)?‏‎ (5 revisions)
  73. Filters (Spatial): Median‏‎ (5 revisions)
  74. FAQ: How can I view the debugging output of MIPAV?‏‎ (5 revisions)
  75. Filters (Wavelet): Thresholding‏‎ (5 revisions)
  76. Using Scripts (Macros) in MIPAV‏‎ (5 revisions)
  77. MIPAV feature list‏‎ (6 revisions)
  78. Rotating images‏‎ (6 revisions)
  79. Using Shell scripting to lessen typing‏‎ (6 revisions)
  80. Select Algorithms and Brain Tools for Talairach Transform‏‎ (6 revisions)
  81. Transformation matrix‏‎ (6 revisions)
  82. Planning scripts‏‎ (6 revisions)
  83. Registration: Landmark-TPSpline‏‎ (6 revisions)
  84. Filters (Spatial): Gaussian Blur‏‎ (6 revisions)
  85. Filters (Spatial): Slice Averaging‏‎ (6 revisions)
  86. Filters (Spatial): Unsharp Mask‏‎ (6 revisions)
  87. Muscle Segmentation‏‎ (6 revisions)
  88. Quantify Mask‏‎ (6 revisions)
  89. Task 1, Performing a semimanual transformation on datasets to the Talairach coordinate system‏‎ (6 revisions)
  90. Task 2, Applying Talairach VOIs‏‎ (6 revisions)
  91. Eclipse installation and configuration documentation‏‎ (6 revisions)
  92. Filters (Wavelet): De-noising BLS GSM‏‎ (6 revisions)
  93. Receiving and sending image files‏‎ (6 revisions)
  94. Adding image margins‏‎ (6 revisions)
  95. Adding noise to images‏‎ (7 revisions)
  96. Filters (Spatial): Nonlinear Noise Reduction‏‎ (7 revisions)
  97. Visualizing Images: Displaying images using the default view‏‎ (7 revisions)
  98. Registration: Landmark-Least Squares‏‎ (7 revisions)
  99. Conventions used in this guide‏‎ (7 revisions)
  100. Technical Information‏‎ (7 revisions)

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