Package gov.nih.mipav.model.algorithms

Class Confmap.BFF

java.lang.Object

gov.nih.mipav.model.algorithms.Confmap.TriangleMesh

gov.nih.mipav.model.algorithms.Confmap.confMap

gov.nih.mipav.model.algorithms.Confmap.BFF

Enclosing class:

Confmap

class Confmap.BFF
extends Confmap.confMap

Field Summary

Fields

Modifier and Type	Field	Description
(package private) Dijkstra.csr_matrix	_A
(package private) Dijkstra.csr_matrix	_ABB
(package private) Dijkstra.csr_matrix	_AIB
(package private) double[]	_angle_defects
(package private) Confmap.BFF	_bff_cut
(package private) double[]	_boundary_edge_lengths
(package private) double[]	_im_k
(package private) Confmap.TriangleMesh	_image
(package private) int[]	_inner_vertices
(package private) double[]	_ub
(package private) int[]	_vmap_cut
(package private) Dijkstra	dj
(package private) SuperLU.SuperMatrix	LA
(package private) SuperLU.SuperMatrix	LABB
(package private) SuperLU.SuperMatrix	LAII
(package private) int[]	perm_cA
(package private) int[]	perm_cABB
(package private) int[]	perm_cAII
(package private) int[]	perm_rA
(package private) int[]	perm_rABB
(package private) int[]	perm_rAII
(package private) SuperLU.SuperLUStat_t	statA
(package private) SuperLU.SuperLUStat_t	statABB
(package private) SuperLU.SuperLUStat_t	statAII
(package private) SuperLU.SuperMatrix	UA
(package private) SuperLU.SuperMatrix	UABB
(package private) SuperLU.SuperMatrix	UAII

Fields inherited from class gov.nih.mipav.model.algorithms.Confmap.confMap

_cone_singularities, _is_holomorphic, _is_spherical, _target_cone_angles

Fields inherited from class gov.nih.mipav.model.algorithms.Confmap.TriangleMesh

_boundary_vertices, _edges, _face_edges, _faces, _ff, _ffi, _readonly, _vertices, _vf, _vfi

Constructor Summary

Constructors

Constructor	Description
BFF(double[][] vertices, int[][] faces, int[] polygon)

Method Summary

Modifier and Type	Method	Description
void	_add_singularities_auto(int count, double[] cone_angles, double quantize)
void	_add_singularities_by_id(int[] vertex_ids, double[] cone_angles, double quantize)
void	_add_singularities_by_id(int vertex_ids, double cone_angles, double quantize)
double[][]	_best_fit_curve()
double[]	_compute_cone_angles()
double[]	_compute_scale_factors()
double[][]	_extend_curve(double[][] uvb)
int[]	_index_vertices(boolean boundary, boolean cones)
void	_post_reset_cuts()
void	_set_dirichlet(double[] ub)
void	_set_neumann(double[] im_k)
Confmap.TriangleMesh	layout(boolean normalize, int[] start_vertices, java.util.HashMap<java.lang.Integer,java.util.HashSet<java.lang.Integer>> cut_tree)
void	optimize()
Confmap.TriangleMesh	parameterize_curve(Confmap.ParametricCurve pcurve)
Confmap.TriangleMesh	parameterize_uniform()
double[]	quasi_conformal_error()
void	setup_angles(double[] boundary_angles)
void	setup_lengths(double[] boundary_lengths)
void	setup_polygon(int[] poly_vertices)
void	setup_scale_factors(double[] ub)

Methods inherited from class gov.nih.mipav.model.algorithms.Confmap.confMap

_pre_add_singularities, _pre_add_singularities, _pre_setup_angles, _pre_setup_lengths, _pre_setup_polygon, _pre_setup_scale_factors, add_singularities, add_singularities, add_singularity, cone_singularities, image, is_holomorphic, is_spherical, reset_cuts, setup_minimum_distortion, target_cone_angles

Methods inherited from class gov.nih.mipav.model.algorithms.Confmap.TriangleMesh

boundary_edges, boundary_vertices, compute_angle_defects, compute_edge_lengths, compute_laplacian, copy, cut_faces_tr, edge_count, edges, face_count, faces, ff, ffi, find_cuts, get_vertex_faces, get_vertex_faces, is_readonly, normalize, set_readonly, set_vertices, vertex_count, vertex_dim, vertices, vf, vfi

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

dj

Dijkstra dj

_boundary_edge_lengths

double[] _boundary_edge_lengths

_angle_defects

double[] _angle_defects

_A

Dijkstra.csr_matrix _A

_inner_vertices

int[] _inner_vertices

_AIB

Dijkstra.csr_matrix _AIB

_ABB

Dijkstra.csr_matrix _ABB

LA

SuperLU.SuperMatrix LA

UA

SuperLU.SuperMatrix UA

perm_cA

int[] perm_cA

perm_rA

int[] perm_rA

statA

SuperLU.SuperLUStat_t statA

LAII

SuperLU.SuperMatrix LAII

UAII

SuperLU.SuperMatrix UAII

perm_cAII

int[] perm_cAII

perm_rAII

int[] perm_rAII

statAII

SuperLU.SuperLUStat_t statAII

LABB

SuperLU.SuperMatrix LABB

UABB

SuperLU.SuperMatrix UABB

perm_cABB

int[] perm_cABB

perm_rABB

int[] perm_rABB

statABB

SuperLU.SuperLUStat_t statABB

_vmap_cut

int[] _vmap_cut

_bff_cut

Confmap.BFF _bff_cut

_ub

double[] _ub

_im_k

double[] _im_k

_image

Confmap.TriangleMesh _image

Constructor Detail

BFF

public BFF(double[][] vertices,
           int[][] faces,
           int[] polygon)

Method Detail

_set_dirichlet

public void _set_dirichlet(double[] ub)

_set_neumann

public void _set_neumann(double[] im_k)

_best_fit_curve

public double[][] _best_fit_curve()

_extend_curve

public double[][] _extend_curve(double[][] uvb)

_post_reset_cuts

public void _post_reset_cuts()

Overrides:

_post_reset_cuts in class Confmap.confMap

setup_scale_factors

public void setup_scale_factors(double[] ub)

Specified by:

setup_scale_factors in class Confmap.confMap

setup_polygon

public void setup_polygon(int[] poly_vertices)

Specified by:

setup_polygon in class Confmap.confMap

setup_angles

public void setup_angles(double[] boundary_angles)

Specified by:

setup_angles in class Confmap.confMap

setup_lengths

public void setup_lengths(double[] boundary_lengths)

Specified by:

setup_lengths in class Confmap.confMap

optimize

public void optimize()

_index_vertices

public int[] _index_vertices(boolean boundary,
                             boolean cones)

_compute_scale_factors

public double[] _compute_scale_factors()

_compute_cone_angles

public double[] _compute_cone_angles()

_add_singularities_by_id

public void _add_singularities_by_id(int[] vertex_ids,
                                     double[] cone_angles,
                                     double quantize)

Specified by:

_add_singularities_by_id in class Confmap.confMap

_add_singularities_by_id

public void _add_singularities_by_id(int vertex_ids,
                                     double cone_angles,
                                     double quantize)

_add_singularities_auto

public void _add_singularities_auto(int count,
                                    double[] cone_angles,
                                    double quantize)

Specified by:

_add_singularities_auto in class Confmap.confMap

layout

public Confmap.TriangleMesh layout(boolean normalize,
                                   int[] start_vertices,
                                   java.util.HashMap<java.lang.Integer,java.util.HashSet<java.lang.Integer>> cut_tree)

Specified by:

layout in class Confmap.confMap

parameterize_uniform

public Confmap.TriangleMesh parameterize_uniform()

Specified by:

parameterize_uniform in class Confmap.confMap

parameterize_curve

public Confmap.TriangleMesh parameterize_curve(Confmap.ParametricCurve pcurve)

Specified by:

parameterize_curve in class Confmap.confMap

quasi_conformal_error

public double[] quasi_conformal_error()