Package gov.nih.mipav.model.algorithms

Class Confmap.confMap

java.lang.Object

gov.nih.mipav.model.algorithms.Confmap.TriangleMesh

gov.nih.mipav.model.algorithms.Confmap.confMap

Direct Known Subclasses:

Confmap.BFF, Confmap.CETM

Enclosing class:

Confmap

abstract class Confmap.confMap
extends Confmap.TriangleMesh

Field Summary

Fields

Modifier and Type	Field	Description
(package private) int[]	_cone_singularities
(package private) Confmap.TriangleMesh	_image
(package private) boolean	_is_holomorphic
(package private) boolean	_is_spherical
(package private) double[]	_target_cone_angles

Fields inherited from class gov.nih.mipav.model.algorithms.Confmap.TriangleMesh

_boundary_vertices, _edges, _face_edges, _faces, _ff, _ffi, _readonly, _vertices, _vf, _vfi

Constructor Summary

Constructors

Constructor	Description
confMap(double[][] vertices, int[][] faces)

Method Summary

Modifier and Type	Method	Description
abstract void	_add_singularities_auto(int count, double[] cone_angles, double quantize)
abstract void	_add_singularities_by_id(int[] vertex_ids, double[] cone_angles, double quantize)
void	_post_reset_cuts()
void	_pre_add_singularities(int[] vertex_ids, double[] cone_angles)
void	_pre_add_singularities(int vertex_ids, double cone_angles)
void	_pre_setup_angles(double[] boundary_angles)
void	_pre_setup_lengths(double[] boundary_lengths)
void	_pre_setup_polygon(int[] poly_vertices)
void	_pre_setup_scale_factors(double[] ub)
void	add_singularities(int[] vertices, double[] cone_angles, double quantize)
void	add_singularities(int vertices, double[] cone_angles, double quantize)
void	add_singularity(int vertex_id, double cone_angle, double quantize)
int[]	cone_singularities()
Confmap.TriangleMesh	image()
boolean	is_holomorphic()
boolean	is_spherical()
abstract Confmap.TriangleMesh	layout(boolean normalize, int[] start_vertices, HashMap<Integer,HashSet<Integer>> cut_tree)
abstract Confmap.TriangleMesh	parameterize_curve(Confmap.ParametricCurve pcurve)
abstract Confmap.TriangleMesh	parameterize_uniform()
void	reset_cuts()
abstract void	setup_angles(double[] boundary_angles)
abstract void	setup_lengths(double[] boundary_lengths)
void	setup_minimum_distortion()
abstract void	setup_polygon(int[] poly_vertices)
abstract void	setup_scale_factors(double[] ub)
double[]	target_cone_angles()

Methods inherited from class gov.nih.mipav.model.algorithms.Confmap.TriangleMesh

boundary_edges, boundary_vertices, compute_angle_defects, compute_edge_lengths, compute_laplacian, copy, cut_faces_tr, edge_count, edges, face_count, faces, ff, ffi, find_cuts, get_vertex_faces, get_vertex_faces, is_readonly, normalize, set_readonly, set_vertices, vertex_count, vertex_dim, vertices, vf, vfi

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

_is_holomorphic

boolean _is_holomorphic

_is_spherical

boolean _is_spherical

_cone_singularities

int[] _cone_singularities

_target_cone_angles

double[] _target_cone_angles

_image

Confmap.TriangleMesh _image

Constructor Details

confMap

public confMap(double[][] vertices,
 int[][] faces)

Method Details

is_holomorphic

public boolean is_holomorphic()

is_spherical

public boolean is_spherical()

cone_singularities

public int[] cone_singularities()

target_cone_angles

public double[] target_cone_angles()

image

public Confmap.TriangleMesh image()

_pre_setup_scale_factors

public void _pre_setup_scale_factors(double[] ub)

reset_cuts

public void reset_cuts()

_post_reset_cuts

public void _post_reset_cuts()

setup_scale_factors

public abstract void setup_scale_factors(double[] ub)

setup_minimum_distortion

public void setup_minimum_distortion()

_pre_setup_polygon

public void _pre_setup_polygon(int[] poly_vertices)

setup_polygon

public abstract void setup_polygon(int[] poly_vertices)

_pre_setup_angles

public void _pre_setup_angles(double[] boundary_angles)

setup_angles

public abstract void setup_angles(double[] boundary_angles)

_pre_setup_lengths

public void _pre_setup_lengths(double[] boundary_lengths)

setup_lengths

public abstract void setup_lengths(double[] boundary_lengths)

_pre_add_singularities

public void _pre_add_singularities(int[] vertex_ids,
 double[] cone_angles)

_pre_add_singularities

public void _pre_add_singularities(int vertex_ids,
 double cone_angles)

_add_singularities_by_id

public abstract void _add_singularities_by_id(int[] vertex_ids,
 double[] cone_angles,
 double quantize)

_add_singularities_auto

public abstract void _add_singularities_auto(int count,
 double[] cone_angles,
 double quantize)

add_singularities

public void add_singularities(int[] vertices,
 double[] cone_angles,
 double quantize)

add_singularities

public void add_singularities(int vertices,
 double[] cone_angles,
 double quantize)

add_singularity

public void add_singularity(int vertex_id,
 double cone_angle,
 double quantize)

layout

public abstract Confmap.TriangleMesh layout(boolean normalize,
 int[] start_vertices,
 HashMap<Integer,HashSet<Integer>> cut_tree)

parameterize_uniform

public abstract Confmap.TriangleMesh parameterize_uniform()

parameterize_curve

public abstract Confmap.TriangleMesh parameterize_curve(Confmap.ParametricCurve pcurve)