java.lang.Object
- gov.nih.mipav.model.algorithms.Confmap.TriangleMesh

Direct Known Subclasses:

Confmap.confMap

Enclosing class:

Confmap
```
class Confmap.TriangleMesh
extends java.lang.Object
```

Field Summary

Fields
Modifier and Type	Field	Description
`(package private) int[]`	`_boundary_vertices`
`(package private) int[][]`	`_edges`
`(package private) int[][]`	`_face_edges`
`(package private) int[][]`	`_faces`
`(package private) int[][]`	`_ff`
`(package private) int[][]`	`_ffi`
`(package private) boolean`	`_readonly`
`(package private) double[][]`	`_vertices`
`(package private) int[]`	`_vf`
`(package private) int[]`	`_vfi`

Constructor Summary

Constructors
Constructor Description

TriangleMesh(double[][] vertices, int[][] faces, boolean readonly)

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`(package private) int[][]`	`boundary_edges()`
`(package private) int[]`	`boundary_vertices()`
`double[]`	`compute_angle_defects()`
`double[]`	`compute_edge_lengths()`
`Dijkstra.csr_matrix`	`compute_laplacian()`
`Confmap.TriangleMesh`	`copy(boolean copy_values)`
`Confmap.TriangleMesh`	`cut_faces_tr(int[] start_vertices, java.util.HashMap<java.lang.Integer,java.util.HashSet<java.lang.Integer>> cut_tree, boolean copy_values)`
`(package private) int`	`edge_count()`
`(package private) int[][]`	`edges()`
`(package private) int`	`face_count()`
`(package private) int[][]`	`faces()`
`(package private) int[][]`	`ff()`
`(package private) int[][]`	`ffi()`
`int[]`	`find_cuts(java.util.HashMap<java.lang.Integer,java.util.HashSet<java.lang.Integer>> cut_tree, int[] original_terminal_vertices)`
`int[]`	`get_vertex_faces(int vertex_id)`
`int[]`	`get_vertex_faces(int[][] ff, int[][] ffi, int[] vf, int[] vfi, int vertex_id)`
`(package private) boolean`	`is_readonly()`
`void`	`normalize()`
`void`	`set_readonly()`
`void`	`set_vertices(double[][] original_values)`
`(package private) int`	`vertex_count()`
`(package private) int`	`vertex_dim()`
`(package private) double[][]`	`vertices()`
`(package private) int[]`	`vf()`
`(package private) int[]`	`vfi()`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

_vertices
```
double[][] _vertices
```

_faces
```
int[][] _faces
```

_edges
```
int[][] _edges
```

_boundary_vertices
```
int[] _boundary_vertices
```

_ff
```
int[][] _ff
```

_ffi
```
int[][] _ffi
```

_vf
```
int[] _vf
```

_vfi
```
int[] _vfi
```

_readonly
```
boolean _readonly
```

_face_edges
```
int[][] _face_edges
```

Constructor Detail

TriangleMesh

public TriangleMesh(double[][] vertices,
                    int[][] faces,
                    boolean readonly)

Method Detail

vertices
```
double[][] vertices()
```

vertex_dim
```
int vertex_dim()
```

vertex_count
```
int vertex_count()
```

faces
```
int[][] faces()
```

edges
```
int[][] edges()
```

face_count
```
int face_count()
```

edge_count
```
int edge_count()
```

boundary_vertices
```
int[] boundary_vertices()
```

boundary_edges
```
int[][] boundary_edges()
```

ff
```
int[][] ff()
```

ffi
```
int[][] ffi()
```

vf
```
int[] vf()
```

vfi
```
int[] vfi()
```

is_readonly
```
boolean is_readonly()
```

set_vertices

public void set_vertices(double[][] original_values)

get_vertex_faces

public int[] get_vertex_faces(int[][] ff,
                              int[][] ffi,
                              int[] vf,
                              int[] vfi,
                              int vertex_id)

get_vertex_faces

public int[] get_vertex_faces(int vertex_id)

compute_edge_lengths

public double[] compute_edge_lengths()

compute_angle_defects

public double[] compute_angle_defects()

compute_laplacian

public Dijkstra.csr_matrix compute_laplacian()

find_cuts

public int[] find_cuts(java.util.HashMap<java.lang.Integer,java.util.HashSet<java.lang.Integer>> cut_tree,
                       int[] original_terminal_vertices)

cut_faces_tr

public Confmap.TriangleMesh cut_faces_tr(int[] start_vertices,
                                         java.util.HashMap<java.lang.Integer,java.util.HashSet<java.lang.Integer>> cut_tree,
                                         boolean copy_values)

normalize
```
public void normalize()
```

copy

public Confmap.TriangleMesh copy(boolean copy_values)

set_readonly
```
public void set_readonly()
```

Class Confmap.TriangleMesh

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Detail

_vertices

_faces

_edges

_boundary_vertices

_ff

_ffi

_vf

_vfi

_readonly

_face_edges

Constructor Detail

TriangleMesh

Method Detail

vertices

vertex_dim

vertex_count

faces

edges

face_count

edge_count

boundary_vertices

boundary_edges

ff

ffi

vf

vfi

is_readonly

set_vertices

get_vertex_faces

get_vertex_faces

compute_edge_lengths

compute_angle_defects

compute_laplacian

find_cuts

cut_faces_tr

normalize

copy

set_readonly