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Preface

• Scope of this guide
• Who should use this guide
• Skills you need to perform tasks in MIPAV
• How this guide is organized
  • Volume 1, Basics
  • Volume 2, Algorighms
• Where to find more information
• Conventions used in this guide

Volume 1: Chapters

1. Introducing MIPAV
2. Installing MIPAV
3. Getting Started Quickly with MIPAV
4. Understanding Image Basics
5. Working with DICOM Images
6. Connecting to SRB BIRN
7. Visualizing Images
8. Segmenting Images Using Contours and Masks
9. Analyzing Images
10. Changing Image Datasets Using MIPAV Utilities
11. Using Scripts (Macros) in MIPAV
12. Developing Plugin Programs

Volume 2: MIPAV Algorithms

• Understanding MIPAV capabilities
  • Understanding MIPAV capabilities
  • Developing new tools using the API
• Using MIPAV Algorithms
  • B-Spline Automatic Registration
  • DTI Color Display
  • Edge Detection: Zero X Laplacian
  • Edge Detection: Zero X Non-Maximum Suppression
  • Extract Brain: Extract Brain Surface (BET
  • Extract Brain: Extract Brain Surface (BSE)
  • Face Anonymizer (BET)
  • Fast Fourier Transformation (FFT
  • Filters (Frequency)
  • Filters (Spatial): Adaptive Path Smooth

Optimized automatic registration 3D

Appendices

1. References
2. DICOM Conformance
3. Technical Information