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| | MIPAV has four toolbars, which you can choose to display or hide at any time an image is open. | | MIPAV has four toolbars, which you can choose to display or hide at any time an image is open. |
| | | | |
| − | Refer to:
| + | See also: |
| | *[[MIPAV toolbars#ImageToolbar | Image toolbar]] | | *[[MIPAV toolbars#ImageToolbar | Image toolbar]] |
| | *[[MIPAV toolbars#PaintToolbar | Paint toolbar]] | | *[[MIPAV toolbars#PaintToolbar | Paint toolbar]] |
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| | === How can I show or hide toolbars? === | | === How can I show or hide toolbars? === |
| − | Refer to:
| + | See also: |
| | *[[MIPAV toolbars]] | | *[[MIPAV toolbars]] |
| | *[[Displaying MIPAV Toolbars#ShowingHidingToolbars | Displaying MIPAV Toolbars: How to show/hide tollbars]] | | *[[Displaying MIPAV Toolbars#ShowingHidingToolbars | Displaying MIPAV Toolbars: How to show/hide tollbars]] |
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| | MIPAV allows you to keep a history of all of the actions-the algorithms and utilities-that you perform on images. The history includes the specific parameters that were set for the action. In addition, if you save the images as XML files, the history of actions and their parameters appears in in XMP file. | | MIPAV allows you to keep a history of all of the actions-the algorithms and utilities-that you perform on images. The history includes the specific parameters that were set for the action. In addition, if you save the images as XML files, the history of actions and their parameters appears in in XMP file. |
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| − | For more information refer to: '''[[Getting Started Quickly with MIPAV]] > [[Customizing MIPAV#ActionsHistory | Saving a history of actions on images]]'''. | + | For more information refer to: |
| | + | |
| | + | *[[Getting Started Quickly with MIPAV]] |
| | + | *[[Customizing MIPAV#ActionsHistory | Saving a history of actions on images]] |
| | | | |
| | === How can I load images from a CD on my Mac? === | | === How can I load images from a CD on my Mac? === |
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| | MIPAV ordinarily does not use the Macintosh standard file selector; instead, it shows a more traditionally UNIX way of looking at the file system on the Apple Macintosh. | | MIPAV ordinarily does not use the Macintosh standard file selector; instead, it shows a more traditionally UNIX way of looking at the file system on the Apple Macintosh. |
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| − | <div style="font-style: normal; margin-bottom: 6pt; margin-left: 0pt; margin-right: 0pt; margin-top: 14pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> To view the CD that is loaded into the Mac's disk drive using the MIPAV file selector<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 14pt; margin-left: 18pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 1 Select the name of the drive from the directory bar.<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 14pt; margin-left: 18pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 2 Select the Volumes directory.<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 14pt; margin-left: 18pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 3 Select the name of the loaded CD. Selecting the CD lets you browse its contents.<br /></font></div><div style="font-style: normal; margin-bottom: 6pt; margin-left: 0pt; margin-right: 0pt; margin-top: 14pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> To make MIPAV use the Macintosh standard file selector<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 14pt; margin-left: 18pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 1 Select Help > Program Options in the MIPAV main window. The Program Options dialog box opens. <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 14pt; margin-left: 18pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 2 Select Use Platform-style File dialog boxes. MIPAV then uses the Macintosh default file chooser. <br /></font></div><div style="font-style: normal; margin-bottom: 6pt; margin-left: 0pt; margin-right: 0pt; margin-top: 14pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> Why is MIPAV's default file selector not standard on the platform? <br /></font>'''</div>
| + | ==== To view the CD that is loaded into the Mac's disk drive using the MIPAV file selector ==== |
| | + | <ol> |
| | + | <li> Select the name of the drive from the directory bar.</li> |
| | + | <li>Select the Volumes directory.</li> |
| | + | <li>Select the name of the loaded CD. Selecting the CD lets you browse its contents.</li> |
| | + | </ol> |
| | | | |
| − | The MIPAV default file selector allows you to save shortcuts to directories where you keep image files. These shortcuts can save time in finding image sets that are kept in different directories.
| + | ==== Why is MIPAV's default file selector not standard on the platform? ==== |
| | | | |
| − | === How do I set up default file types to display or save? ===
| + | The MIPAV [[Opening and loading image files | default file selector]] allows you to [[Customizing MIPAV#DefaultFileTypes | save shortcuts]] to directories where you keep image files. These shortcuts can save time in finding image sets that are kept in different directories. |
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| − | When you using MIPAV, chances are that you are working with the same type of files every day or perhaps for a certain period of time. For example, suppose you normally work with medical files (files whose extensions are <span style="font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline">''<font color="#000000">.dcm, .xml, .ima, .img, .mnc, .sig, .head</font>''</span>). In this situation, when opening or saving images, you want to see only the medical files, not other file types. One of the ways of customizing MIPAV is the ability to show only specific types of files by default.
| + | See also: |
| | | | |
| − | The <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">File filter default</font>'''</span> box on the MIPAV Options dialog box allows you to choose which types of files should be shown in the Files of type box in the Open Image and Save Image as dialog boxes.
| + | *[[Opening and loading image files]] |
| | + | *[[Displaying images]] |
| | + | *[[Creating new images]] |
| | + | *[[Saving and printing images]] |
| | + | *[[Supported Formats]] |
| | + | **[[Supported Formats | Graphical and file formats supported by MIPAV]] |
| | + | **[[Image formats descriptions | Image formats' descriptions]] |
| | + | **[[FAQ: Understanding Image Basics#FilesExtensions | Image files supported by MIPAV]] |
| | + | |
| | + | === How do I set up default file types to display or save? === |
| | + | When you using MIPAV, chances are that you are working with the same type of files every day or perhaps for a certain period of time. For example, suppose you normally work with medical files (files whose extensions are <span style="font-family:courier">.dcm, .xml, .ima, .img, .mnc, .sig, .head</span>, etc.). In this situation, when opening or saving images, you want to see only the medical files, not other file types. One of the ways of customizing MIPAV is the ability to show only specific types of files by default. See also: [[Understanding Image Basics#FilesExtensions| Image files supported by MIPAV]]. |
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| − | <div style="font-style: normal; margin-bottom: 6pt; margin-left: 0pt; margin-right: 0pt; margin-top: 14pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> To choose the default file types to display or save<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 14pt; margin-left: 18pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 1 Select <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">Help > Program Options</font>'''</span>. The MIPAV Options dialog box (Figure 17) opens.<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000">
| + | The File Filter Default box on the MIPAV Options dialog box allows you to choose which types of files should be shown in the Files of type box in the Open Image and Save Image as dialog boxes. [[Customizing MIPAV#DefaultFileTypes1 | Read more: To choose the default file types to display and/or save ...]] |
| | | | |
| − | {| border="1" cellpadding="5"
| + | See also: |
| − | |+ '''Figure 17. File filter default box on the MIPAV Options dialog box'''
| + | |
| − | |-
| + | |
| − | |
| + | |
| − | [[Image:boxFileFilterDefault.jpg]]
| + | |
| − | |}
| + | |
| | | | |
| − | <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 14pt; margin-left: 18pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 2 Click <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">File filter default</font>'''</span>. The Choose File Filter dialog box (Figure 18) appears.<br /><
| + | *[[Supported Formats]] |
| | + | **[[Supported Formats | Graphical and file formats supported by MIPAV]] |
| | + | **[[Image formats descriptions | Image formats' descriptions]] |
| | + | **[[FAQ: Understanding Image Basics#FilesExtensions | Image files supported by MIPAV]] |
| | | | |
| − | {| border="1" cellpadding="5"
| + | == See also: == |
| − | |+ '''Figure 18. Choose File Filter dialog box: (A) As it appears initially and (B) showing the list of file filters''' | + | *[[Getting Started Quickly with MIPAV]] |
| − | |- | + | *[[Customizing MIPAV]] |
| − | | | + | **[[Customizing MIPAV#MipavOptions | MIPAV Options dialog box]] |
| − | [[Image:dialogboxChooseFileFilter.jpg]] | + | **[[Customizing MIPAV#SplashScreen | Showing and hiding the splash screen on start-up]] |
| − | |} | + | **[[Customizing MIPAV#DebuggingMipav | Debugging MIPAV]] |
| | + | **[[Customizing MIPAV#ActionsHistory | Saving a history of actions on images]] |
| | + | **[[Customizing MIPAV#DefaultFileTypes | Choosing the default file types to display or save]] |
| | + | **[[Customizing MIPAV#AddingShortcuts | Adding Shortcuts]] |
| | | | |
| − | <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 14pt; margin-left: 18pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 3 Select on the file filters. You can choose one of the following collections of file types:<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 36pt; margin-right: 0pt; margin-top: 6pt; text-align: left; text-decoration: none; text-indent: -12pt; text-transform: none; vertical-align: baseline"><font color="#000000"> All (*.*)<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 36pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -12pt; text-transform: none; vertical-align: baseline"><font color="#000000"> AVI (<span style="font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline">''<font color="#000000"><nowiki>*.avi</nowiki></font>''</span>)<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 36pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -12pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Class files (<span style="font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline">''<font color="#000000"><nowiki>*.class</nowiki></font>''</span>)<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 36pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -12pt; text-transform: none; vertical-align: baseline"><font color="#000000"> FreeSurfer (<span style="font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline">''<font color="#000000"><nowiki>*.asc</nowiki></font>''</span>)<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 36pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -12pt; text-transform: none; vertical-align: baseline"><font color="#000000"> General (<span style="font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline">''<font color="#000000"><nowiki>*.gif, *.jpeg, *.jpg, *.pict, *.psd, *.tif, *.tiff</nowiki></font>''</span>)<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 36pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -12pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Graphs (<span style="font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline">''<font color="#000000"><nowiki>*.plt</nowiki></font>''</span>)<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 36pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -12pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Look-up tables files (<span style="font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline">''<font color="#000000"><nowiki>*.lut</nowiki></font>''</span>)<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 36pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -12pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Matrix files (<span style="font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline">''<font color="#000000"><nowiki>*.mtx, *.mat</nowiki></font>''</span>)<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 36pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -12pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Medical (<span style="font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline">''<font color="#000000"><nowiki>*.dcm, *.xml, *.ima, *,img, *.mnc, *.sig, *.head</nowiki></font>''</span>)<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 36pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -12pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Microscopy (<span style="font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline">''<font color="#000000"><nowiki>*.avi, *.ics, *.lsm, *.pic, *.stk, *.tif, *.tiff, *.xml</nowiki></font>''</span>)<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 36pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -12pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Misc. (<span style="font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline">''<font color="#000000"><nowiki>*.avi, *.bmp, *.pcx, *.png, *.tga, *.xbm, *. xpm</nowiki></font>''</span>)<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 36pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -12pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Optical (<span style="font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline">''<font color="#000000"><nowiki>*.avi, *.bmp, *.img, *.jpg, *.pict, *.psd, *.tif, *.tiff, *.xml</nowiki></font>''</span>)<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 36pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -12pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Project (<span style="font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline">''<font color="#000000"><nowiki>*.xml</nowiki></font>''</span>)<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 36pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -12pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Script files (<span style="font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline">''<font color="#000000"><nowiki>*.sct</nowiki></font>''</span>)<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 36pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -12pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Surface files (<span style="font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline">''<font color="#000000"><nowiki>*.sur, *.wrl</nowiki></font>''</span>)<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 36pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -12pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Transfer function files (<span style="font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline">''<font color="#000000"><nowiki>*.fun</nowiki></font>''</span>)<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 36pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -12pt; text-transform: none; vertical-align: baseline"><font color="#000000"> VOI files (<span style="font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline">''<font color="#000000"><nowiki>*.voi</nowiki></font>''</span>)<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 36pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -12pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Nonlinear transformation files (<span style="font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline">''<font color="#000000"><nowiki>*.nlt</nowiki></font>''</span>)<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 18pt; margin-right: 0pt; margin-top: 6pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 1 Click <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">OK</font>'''</span>. The Choose File Type dialog box closes.<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 18pt; margin-right: 0pt; margin-top: 6pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 2 Click <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">Apply</font>'''</span> in the MIPAV Options dialog box. This change takes effect immediately.<br /></font></div><div style="font-style: normal; margin-bottom: 6pt; margin-left: 0pt; margin-right: 0pt; margin-top: 14pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> To verify that the filters you chose are used as the default filters<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 14pt; margin-left: 18pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 1 Select <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">File > Open > Image(A)</font>'''</span>. The Open Image dialog box ([FAQMain.backup.html#1036601 Figure 19]) appears. The <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">Files of type</font>'''</span> box should show the filters you chose. <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 14pt; margin-left: 18pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 2 Select <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">File > Save Image as</font>'''</span>. The Save Image as dialog box (Figure 19) opens with the <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">Files of type</font>'''</span> box listing the file filters you chose.<br />
| + | Next: [[FAQ: Understanding Image Basics]] |
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| − | {| border="1" cellpadding="5"
| + | [[Category: FAQ]] |
| − | |+ '''Figure 19. The default file filters appear in Files of type box on the Open Image dialog box and Save Image as dialog box'''
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| − | [[Image:exampleFilesofType.jpg]] | + | |
| − | |}
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| − | [[FAQ: Understanding Image Basics]] | + | [[Category: Help]] |
MIPAV has four toolbars, which you can choose to display or hide at any time an image is open.
MIPAV allows you to keep a history of all of the actions-the algorithms and utilities-that you perform on images. The history includes the specific parameters that were set for the action. In addition, if you save the images as XML files, the history of actions and their parameters appears in in XMP file.
MIPAV ordinarily does not use the Macintosh standard file selector; instead, it shows a more traditionally UNIX way of looking at the file system on the Apple Macintosh.
When you using MIPAV, chances are that you are working with the same type of files every day or perhaps for a certain period of time. For example, suppose you normally work with medical files (files whose extensions are .dcm, .xml, .ima, .img, .mnc, .sig, .head, etc.). In this situation, when opening or saving images, you want to see only the medical files, not other file types. One of the ways of customizing MIPAV is the ability to show only specific types of files by default. See also: Image files supported by MIPAV.
