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| | == Customizing MIPAV == | | == Customizing MIPAV == |
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| | === How do I show or hide the splash screen? === | | === How do I show or hide the splash screen? === |
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| − | The splash screen is the screen ([FAQMain.backup.html#1043206 Figure 4]) that first appears when you start MIPAV. It displays the name of the product.
| + | Refer to: |
| | + | *[[Customizing MIPAV]] |
| | + | **[[Customizing MIPAV#MipavOptions | MIPAV Options dialog box]] |
| | + | **[[Customizing MIPAV#SplashScreen | Showing and hiding the splash screen on start-up]] |
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| − | <div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000">
| + | === How can I show or hide MIPAV toolbars? === |
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| + | MIPAV has four toolbars, which you can choose to display or hide at any time an image is open. |
| − | |+ <div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> Figure 4. MIPAV Splash Screen<br /></font>'''</div> <div class="CellBody"><br /></div>
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| − | <div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> <br clear="all" />{| align="center"
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| − | [[Image:SplashScreen.jpg]]
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| − | |}<br clear="all" /><br /></font></div>
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| − | <br /></font></div><div style="font-style: normal; margin-bottom: 6pt; margin-left: 0pt; margin-right: 0pt; margin-top: 14pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">To hide the splash screen</font>'''</span><br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 14pt; margin-left: 18pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 1 Select <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">Help > Program Options </font>'''</span>in the MIPAV window. The MIPAV Options dialog box ([FAQMain.backup.html#1041406 Figure 5]) opens.<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 14pt; margin-left: 18pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 2 Clear <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">Display Splash Screen</font>'''</span>.<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 14pt; margin-left: 18pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 3 Click <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">Apply</font>'''</span> and then close the dialog box. The next time you start MIPAV, the splash screen does not appear.<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000">
| + | See also: |
| | + | *[[MIPAV toolbars#ImageToolbar | Image toolbar]] |
| | + | *[[MIPAV toolbars#PaintToolbar | Paint toolbar]] |
| | + | *[[MIPAV toolbars#ScriptionToolbar |Scripting toolbar]] |
| | + | *[[MIPAV toolbars#VoiToolbar | VOI toolbar]] |
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| + | ==== Toolbars displayed by default ==== |
| − | |+ <div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> Figure 5. MIPAV Options dialog box<br /></font>'''</div>
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| − | <div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> <br clear="all" />{| align="center"
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| − | [[Image:dialogboxMIPAVOptionsSplashScreen.gif]]
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| − | |}<br clear="all" /><br /></font></div>
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| − | <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> <br /></font></div><div style="font-style: normal; margin-bottom: 6pt; margin-left: 0pt; margin-right: 0pt; margin-top: 14pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">To show the splash screen</font>'''</span><br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 14pt; margin-left: 18pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 1 Select <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">Help > MIPAV options</font>'''</span> in the MIPAV window. The MIPAV Options dialog box ([FAQMain.backup.html#1041406 Figure 5]) appears.<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 14pt; margin-left: 18pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 2 Mark <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">Display Splash Screen</font>'''</span>.<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 14pt; margin-left: 18pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 3 Click <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">Apply</font>'''</span> and then close the dialog box. The splash screen appears the next time you start MIPAV.<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-indent: 0pt; text-transform: none; vertical-align: baseline"><u><font color="#ff1621"> [FAQMain.backup.html#998290 [[Image:FAQMain.backup10.gif]] Back to Questions]<br /></font></u></div><div style="font-style: normal; font-weight: normal; margin-bottom: 600pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> <br /></font></div>
| + | By default, the MIPAV window displays only the [[MIPAV toolbars#VoiToolbar | VOI]] and [[MIPAV toolbars#ImageToolbar | Image]] toolbars. |
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| − | === How do I show or hide toolbars? === | + | === How can I show or hide toolbars? === |
| | + | See also: |
| | + | *[[MIPAV toolbars]] |
| | + | *[[Displaying MIPAV Toolbars#ShowingHidingToolbars | Displaying MIPAV Toolbars: How to show/hide tollbars]] |
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| − | MIPAV has four toolbars, which you can choose to display or hide at any time an image is open. The toolbars are:
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| − | <div style="font-style: normal; font-weight: normal; margin-bottom: 14pt; margin-left: 18pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000"> VOI-</font>'''</span>Volume of interest. The VOI toolbar ([FAQMain.backup.html#1041414 Figure 6]) contains tools that help you in selecting the specific area of interest on the image.<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000">
| + | '''Note:''' Blank check boxes indicate that the toolbar is hidden. Marked check boxes mean that the toolbar is currently displayed. |
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| − | |+ <div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> Figure 6. VOI toolbar<br /></font>'''</div>
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| − | <div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> <br clear="all" />{| align="center"
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| − | [[Image:toolbarVOIcallouts.jpg]]
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| − | <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 14pt; margin-left: 18pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000"> Paint-</font>'''</span>The paint toolbar ([FAQMain.backup.html#1041422 Figure 7]) includes tools that allow you to add, adjust, or remove colors and color intensity, to erase paint, and adjust the opacity level of the paint.<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000">
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| − | |+ <div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> Figure 7. Paint toolbar<br /></font>'''</div>
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| − | <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 14pt; margin-left: 18pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">Scripting-</font>'''</span>The scripting toolbar ([FAQMain.backup.html#1041430 Figure 8]) allows you to run, record, and store scripts. <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000">
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| − | <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 18pt; margin-right: 0pt; margin-top: 6pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> After you create and run your first script, the scripting toolbar changes to display the script in Current Script ([FAQMain.backup.html#1041495 Figure 9]).<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000">
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| − | <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 14pt; margin-left: 18pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">Image-</font>'''</span>The image toolbar ([FAQMain.backup.html#1041467 Figure 10]) includes tools for opening, printing, saving, maximizing, and minimizing an image; converting an image from gray to color or from color to gray; and adding to and removing slices from an image or changing their order, rotating, cropping and flipping an image. <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000">
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| − | <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> <br /></font></div><div style="font-style: normal; margin-bottom: 6pt; margin-left: 0pt; margin-right: 0pt; margin-top: 14pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">To show or hide a toolbar</font>'''</span><br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 14pt; margin-left: 18pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 1 Start MIPAV. The initial MIPAV window ([FAQMain.backup.html#1041442 Figure 11]) and the Output window ([FAQMain.backup.html#1041442 Figure 11]) open.
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| − | <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 14pt; margin-left: 18pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 2 Open an image file to display all of the menus in the MIPAV window. The expanded MIPAV window appears showing all of the menus.<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000">
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| − | <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 14pt; margin-left: 18pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 3 Select <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">Toolbars</font>'''</span>.<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000">
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| − | <br clear="all" /></font></span><span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">Note: </font>'''</span>Blank check boxes indicate that the toolbar is hidden. Marked check boxes mean that the toolbar is currently displayed.<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 14pt; margin-left: 18pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Depending on whether the toolbar is displayed, in a few moments, MIPAV refreshes the MIPAV window with the changes you made.<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-indent: 0pt; text-transform: none; vertical-align: baseline"><u><font color="#ff1621"> [FAQMain.backup.html#998290 [[Image:FAQMain.backup12.gif]] ][FAQMain.backup.html#998290 Back to Questions]<br /></font></u></div>
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| | === How do I save a history of actions on images? === | | === How do I save a history of actions on images? === |
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| − | MIPAV allows you to keep a history of all of the actions-the algorithms and utilities-that you perform on images. The history includes the specific parameters that were set for the action. In addition, if you save the images as XML files, the history of actions and their parameters appears in the dataset attributes section near the beginning of the MIPAV header file (the XML file). Each action appears between the <HISTORY> and <br /></HISTORY> tags. | + | MIPAV allows you to keep a history of all of the actions-the algorithms and utilities-that you perform on images. The history includes the specific parameters that were set for the action. In addition, if you save the images as XML files, the history of actions and their parameters appears in in XMP file. |
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| − | By default, MIPAV does <span style="font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline">''<font color="#000000">not </font>''</span>record a history of actions unless you specifically select the Record history check box in the MIPAV Options dialog box.
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| − | <div style="font-style: normal; margin-bottom: 6pt; margin-left: 0pt; margin-right: 0pt; margin-top: 14pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> To record a history of actions taken on images<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 14pt; margin-left: 18pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 1 Select <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">Help</font>'''</span> > <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">Program Options</font>'''</span> in the MIPAV window. The MIPAV Options dialog box ([FAQMain.backup.html#1036856 Figure 14]) appears.<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 14pt; margin-left: 18pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 2 Mark <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">Record history</font>'''</span>. A check mark appears in the check box ([FAQMain.backup.html#1036856 Figure 14]).<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000">
| + | *[[Getting Started Quickly with MIPAV]] |
| − | | + | *[[Customizing MIPAV#ActionsHistory | Saving a history of actions on images]] |
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| − | <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 14pt; margin-left: 18pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 3 Click <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">Apply</font>'''</span>. From this point on, MIPAV records the actions performed on all images until you clear the <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">Record history</font>'''</span> check box.<br /></font></div><div style="font-style: normal; margin-bottom: 6pt; margin-left: 0pt; margin-right: 0pt; margin-top: 14pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> To view the history of actions as they are performed<br /></font>'''</div>
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| − | The History page in the Image Attributes dialog box allows you to view the list of actions <span style="font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline">''<font color="#000000">immediately</font>''</span> after they are performed. The following example illustrates how to do this:
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| − | <div style="font-style: normal; font-weight: normal; margin-bottom: 14pt; margin-left: 18pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 1 Make sure that the <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">Record history</font>'''</span> check box ([FAQMain.backup.html#1036856 Figure 14 on page 14]) was selected in the MIPAV Options dialog box.<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 14pt; margin-left: 18pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 2 Open a sample image.<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 14pt; margin-left: 18pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 3 Select <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">Image > Attributes > Edit attributes.</font>'''</span> The Image Attributes dialog box opens.<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 14pt; margin-left: 18pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 4 Select <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">History</font>'''</span>. The History page appears.<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 14pt; margin-left: 18pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 5 Click the image to make it the active window.<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 14pt; margin-left: 18pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 6 Select <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">Utilities > Flip > Horizontal</font>'''</span>.<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 18pt; margin-right: 0pt; margin-top: 6pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> The image is flipped horizontally, and the words "Flip(Y_AXIS)" appear on the History page in the Image Attributes dialog box.<br /></font></div> <div class="CellBody"><br /></div><div style="font-style: normal; font-weight: normal; margin-bottom: 14pt; margin-left: 18pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 7 Perform other actions on the image, such as algorithms or other utilities. Notice that these actions appear on the History page ([FAQMain.backup.html#1036891 Figure 15]).<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000">
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| − | <div class="CellHeading">Under What Circumstances Do Actions Fail to Appear on the History Page?</div>
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| − | If MIPAV is fully operational, actions performed on an image always appear on the History page of the Image Attributes dialog box and in the XML file for that image. However, it's important to know whether the actions were performed on the <span style="font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline">''<font color="#000000">original image</font>''</span> or on the <span style="font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline">''<font color="#000000">replacement image.</font>''</span>
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| − | |}Several algorithms and utilities offer a choice of either generating a new image (<span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">New image</font>'''</span> check box) or replacing the original image (<span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">Replace image</font>'''</span> check box). If you choose <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">New image</font>'''</span> and want to see the actions performed on that image, you must select <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">Image > Attributes > Edit Attributes</font>'''</span> to open an Image Attributes dialog box for the new image. If, however, you select <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">Replace image</font>'''</span>, the History page on the Image Attributes dialog box for the original image displays the actions. | + | |
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| − | To illustrate this point, open a sample image; select <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">Image > Attributes > Edit Attributes</font>'''</span> to display the Image Attributes dialog box; and select <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">History</font>'''</span> to display the History page. Perform an action such as <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">Utilities > Image Margins</font>'''</span>, mark <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">New image</font>'''</span> in the dialog box, and then click <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">OK</font>'''</span>. Notice that the action does not appear on the History page. Click on the new image; select <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">Image > Attributes > Edit Attributes</font>'''</span><nowiki>; and select </nowiki><span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">History</font>'''</span>. The History page shows the AddImageMargins action for the new image.
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| − | <br /></font></div><div style="font-style: normal; margin-bottom: 6pt; margin-left: 0pt; margin-right: 0pt; margin-top: 14pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> To view the history of actions recorded in the XML file<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 14pt; margin-left: 18pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 1 Save the sample image as an XML file by selecting <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">File > Save Image as</font>'''</span>. The Save Image as dialog box opens.<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 14pt; margin-left: 18pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 2 Select the directory where you want to save the file in the <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">Save in</font>'''</span> box.<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 14pt; margin-left: 18pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 3 Type the name of the file-use "SampleImage" as the file name-and type an <span style="font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline">''<font color="#000000">.xml</font>''</span> file extension in the File Name box so that the complete file name is "SampleImage.xml."<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 14pt; margin-left: 18pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 4 Click <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">Save</font>'''</span>.<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 14pt; margin-left: 18pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 5 Open Windows Explorer by right-clicking on <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">Start</font>'''</span> and then selecting <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">Explore</font>'''</span>. The Windows Explorer window opens.<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 14pt; margin-left: 18pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 6 Navigate to the directory where you stored the XML file. This directory should have two files named "SampleImage": "SampleImage.raw" and "SampleImage.xml." <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 14pt; margin-left: 18pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 7 Double-click "SampleImage.xml." An internet browser page, such as Internet Explorer or Netscape Communicator, appears displaying an XML page ([FAQMain.backup.html#1036930 Figure 16]).<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 14pt; margin-left: 18pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 8 Notice that, immediately after the <Dataset-attributes> tag, the following line appears: <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 36pt; margin-right: 0pt; margin-top: 6pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> <History>Flip(Y_AXIS)</History><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 18pt; margin-right: 0pt; margin-top: 6pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Each action that you perform on the image appears between its own <History> and <br /></History> tags.<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000">
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| | === How can I load images from a CD on my Mac? === | | === How can I load images from a CD on my Mac? === |
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| | MIPAV ordinarily does not use the Macintosh standard file selector; instead, it shows a more traditionally UNIX way of looking at the file system on the Apple Macintosh. | | MIPAV ordinarily does not use the Macintosh standard file selector; instead, it shows a more traditionally UNIX way of looking at the file system on the Apple Macintosh. |
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| − | <div style="font-style: normal; margin-bottom: 6pt; margin-left: 0pt; margin-right: 0pt; margin-top: 14pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> To view the CD that is loaded into the Mac's disk drive using the MIPAV file selector<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 14pt; margin-left: 18pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 1 Select the name of the drive from the directory bar.<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 14pt; margin-left: 18pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 2 Select the Volumes directory.<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 14pt; margin-left: 18pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 3 Select the name of the loaded CD. Selecting the CD lets you browse its contents.<br /></font></div><div style="font-style: normal; margin-bottom: 6pt; margin-left: 0pt; margin-right: 0pt; margin-top: 14pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> To make MIPAV use the Macintosh standard file selector<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 14pt; margin-left: 18pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 1 Select Help > Program Options in the MIPAV main window. The Program Options dialog box opens. <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 14pt; margin-left: 18pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 2 Select Use Platform-style File dialog boxes. MIPAV then uses the Macintosh default file chooser. <br /></font></div><div style="font-style: normal; margin-bottom: 6pt; margin-left: 0pt; margin-right: 0pt; margin-top: 14pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> Why is MIPAV's default file selector not standard on the platform? <br /></font>'''</div>
| + | ==== To view the CD that is loaded into the Mac's disk drive using the MIPAV file selector ==== |
| | + | <ol> |
| | + | <li> Select the name of the drive from the directory bar.</li> |
| | + | <li>Select the Volumes directory.</li> |
| | + | <li>Select the name of the loaded CD. Selecting the CD lets you browse its contents.</li> |
| | + | </ol> |
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| − | The MIPAV default file selector allows you to save shortcuts to directories where you keep image files. These shortcuts can save time in finding image sets that are kept in different directories.
| + | ==== Why is MIPAV's default file selector not standard on the platform? ==== |
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| − | <span style="font-style: normal; font-weight: normal; text-transform: capitalize; vertical-align: baseline"><u><font color="#ff1621">[FAQMain.backup.html#998290 [[Image:FAQMain.backup31.gif]] ][FAQMain.backup.html#998290 Back to Questions]</font></u></span>
| + | The MIPAV [[Opening and loading image files | default file selector]] allows you to [[Customizing MIPAV#DefaultFileTypes | save shortcuts]] to directories where you keep image files. These shortcuts can save time in finding image sets that are kept in different directories. |
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| − | === How do I set up default file types to display or save? ===
| + | See also: |
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| − | When you using MIPAV, chances are that you are working with the same type of files every day or perhaps for a certain period of time. For example, suppose you normally work with medical files (files whose extensions are <span style="font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline">''<font color="#000000">.dcm, .xml, .ima, .img, .mnc, .sig, .head</font>''</span>). In this situation, when opening or saving images, you want to see only the medical files, not other file types. One of the ways of customizing MIPAV is the ability to show only specific types of files by default.
| + | *[[Opening and loading image files]] |
| | + | *[[Displaying images]] |
| | + | *[[Creating new images]] |
| | + | *[[Saving and printing images]] |
| | + | *[[Supported Formats]] |
| | + | **[[Supported Formats | Graphical and file formats supported by MIPAV]] |
| | + | **[[Image formats descriptions | Image formats' descriptions]] |
| | + | **[[FAQ: Understanding Image Basics#FilesExtensions | Image files supported by MIPAV]] |
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| − | The <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">File filter default</font>'''</span> box on the MIPAV Options dialog box allows you to choose which types of files should be shown in the Files of type box in the Open Image and Save Image as dialog boxes.
| + | === How do I set up default file types to display or save? === |
| − | | + | When you using MIPAV, chances are that you are working with the same type of files every day or perhaps for a certain period of time. For example, suppose you normally work with medical files (files whose extensions are <span style="font-family:courier">.dcm, .xml, .ima, .img, .mnc, .sig, .head</span>, etc.). In this situation, when opening or saving images, you want to see only the medical files, not other file types. One of the ways of customizing MIPAV is the ability to show only specific types of files by default. See also: [[Understanding Image Basics#FilesExtensions| Image files supported by MIPAV]]. |
| − | <div style="font-style: normal; margin-bottom: 6pt; margin-left: 0pt; margin-right: 0pt; margin-top: 14pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> To choose the default file types to display or save<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 14pt; margin-left: 18pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 1 Select <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">Help > Program Options</font>'''</span>. The MIPAV Options dialog box ([FAQMain.backup.html#1036198 Figure 17]) opens.<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000">
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| + | The File Filter Default box on the MIPAV Options dialog box allows you to choose which types of files should be shown in the Files of type box in the Open Image and Save Image as dialog boxes. [[Customizing MIPAV#DefaultFileTypes1 | Read more: To choose the default file types to display and/or save ...]] |
| − | |+ <div style="font-style: normal; margin-bottom: 3pt; margin-left: 0pt; margin-right: 0pt; margin-top: 9pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> Figure 17. File filter default box on the MIPAV Options dialog box<br /></font>'''</div>
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| − | <div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 1pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> <br clear="all" />{| align="center"
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| − | [[Image:boxFileFilterDefault.jpg]]
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| − | |}<br clear="all" /><br /></font></div>
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| − | <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 14pt; margin-left: 18pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 2 Click <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">File filter default</font>'''</span>. The Choose File Filter dialog box ([FAQMain.backup.html#1036380 Figure 18]) appears.<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000">
| + | See also: |
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| − | {| border="1" cellpadding="5"
| + | *[[Supported Formats]] |
| − | |+ <div style="font-style: normal; margin-bottom: 3pt; margin-left: 0pt; margin-right: 0pt; margin-top: 9pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> Figure 18. Choose File Filter dialog box: (A) As it appears initially and (B) showing the list of file filters<br /></font>'''</div> | + | **[[Supported Formats | Graphical and file formats supported by MIPAV]] |
| − | |- | + | **[[Image formats descriptions | Image formats' descriptions]] |
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| + | **[[FAQ: Understanding Image Basics#FilesExtensions | Image files supported by MIPAV]] |
| − | <div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 1pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> <br clear="all" />{| align="center"
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| − | [[Image:dialogboxChooseFileFilter.jpg]]
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| − | |}<br clear="all" /><br /></font></div>
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| − | <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 14pt; margin-left: 18pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 3 Select on the file filters. You can choose one of the following collections of file types:<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 36pt; margin-right: 0pt; margin-top: 6pt; text-align: left; text-decoration: none; text-indent: -12pt; text-transform: none; vertical-align: baseline"><font color="#000000"> All (*.*)<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 36pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -12pt; text-transform: none; vertical-align: baseline"><font color="#000000"> AVI (<span style="font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline">''<font color="#000000"><nowiki>*.avi</nowiki></font>''</span>)<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 36pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -12pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Class files (<span style="font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline">''<font color="#000000"><nowiki>*.class</nowiki></font>''</span>)<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 36pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -12pt; text-transform: none; vertical-align: baseline"><font color="#000000"> FreeSurfer (<span style="font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline">''<font color="#000000"><nowiki>*.asc</nowiki></font>''</span>)<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 36pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -12pt; text-transform: none; vertical-align: baseline"><font color="#000000"> General (<span style="font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline">''<font color="#000000"><nowiki>*.gif, *.jpeg, *.jpg, *.pict, *.psd, *.tif, *.tiff</nowiki></font>''</span>)<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 36pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -12pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Graphs (<span style="font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline">''<font color="#000000"><nowiki>*.plt</nowiki></font>''</span>)<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 36pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -12pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Look-up tables files (<span style="font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline">''<font color="#000000"><nowiki>*.lut</nowiki></font>''</span>)<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 36pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -12pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Matrix files (<span style="font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline">''<font color="#000000"><nowiki>*.mtx, *.mat</nowiki></font>''</span>)<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 36pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -12pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Medical (<span style="font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline">''<font color="#000000"><nowiki>*.dcm, *.xml, *.ima, *,img, *.mnc, *.sig, *.head</nowiki></font>''</span>)<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 36pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -12pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Microscopy (<span style="font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline">''<font color="#000000"><nowiki>*.avi, *.ics, *.lsm, *.pic, *.stk, *.tif, *.tiff, *.xml</nowiki></font>''</span>)<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 36pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -12pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Misc. (<span style="font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline">''<font color="#000000"><nowiki>*.avi, *.bmp, *.pcx, *.png, *.tga, *.xbm, *. xpm</nowiki></font>''</span>)<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 36pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -12pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Optical (<span style="font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline">''<font color="#000000"><nowiki>*.avi, *.bmp, *.img, *.jpg, *.pict, *.psd, *.tif, *.tiff, *.xml</nowiki></font>''</span>)<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 36pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -12pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Project (<span style="font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline">''<font color="#000000"><nowiki>*.xml</nowiki></font>''</span>)<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 36pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -12pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Script files (<span style="font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline">''<font color="#000000"><nowiki>*.sct</nowiki></font>''</span>)<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 36pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -12pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Surface files (<span style="font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline">''<font color="#000000"><nowiki>*.sur, *.wrl</nowiki></font>''</span>)<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 36pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -12pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Transfer function files (<span style="font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline">''<font color="#000000"><nowiki>*.fun</nowiki></font>''</span>)<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 36pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -12pt; text-transform: none; vertical-align: baseline"><font color="#000000"> VOI files (<span style="font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline">''<font color="#000000"><nowiki>*.voi</nowiki></font>''</span>)<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 36pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -12pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Nonlinear transformation files (<span style="font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline">''<font color="#000000"><nowiki>*.nlt</nowiki></font>''</span>)<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 18pt; margin-right: 0pt; margin-top: 6pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 1 Click <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">OK</font>'''</span>. The Choose File Type dialog box closes.<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 18pt; margin-right: 0pt; margin-top: 6pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 2 Click <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">Apply</font>'''</span> in the MIPAV Options dialog box. This change takes effect immediately.<br /></font></div><div style="font-style: normal; margin-bottom: 6pt; margin-left: 0pt; margin-right: 0pt; margin-top: 14pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> To verify that the filters you chose are used as the default filters<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 14pt; margin-left: 18pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 1 Select <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">File > Open > Image(A)</font>'''</span>. The Open Image dialog box ([FAQMain.backup.html#1036601 Figure 19]) appears. The <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">Files of type</font>'''</span> box should show the filters you chose. <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 14pt; margin-left: 18pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 2 Select <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">File > Save Image as</font>'''</span>. The Save Image as dialog box ([FAQMain.backup.html#1036601 Figure 19]) opens with the <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">Files of type</font>'''</span> box listing the file filters you chose.<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000">
| + | == See also: == |
| | + | *[[Getting Started Quickly with MIPAV]] |
| | + | *[[Customizing MIPAV]] |
| | + | **[[Customizing MIPAV#MipavOptions | MIPAV Options dialog box]] |
| | + | **[[Customizing MIPAV#SplashScreen | Showing and hiding the splash screen on start-up]] |
| | + | **[[Customizing MIPAV#DebuggingMipav | Debugging MIPAV]] |
| | + | **[[Customizing MIPAV#ActionsHistory | Saving a history of actions on images]] |
| | + | **[[Customizing MIPAV#DefaultFileTypes | Choosing the default file types to display or save]] |
| | + | **[[Customizing MIPAV#AddingShortcuts | Adding Shortcuts]] |
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| + | Next: [[FAQ: Understanding Image Basics]] |
| − | |+ <div style="font-style: normal; margin-bottom: 3pt; margin-left: 0pt; margin-right: 0pt; margin-top: 9pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> Figure 19. The default file filters appear in Files of type box on the Open Image dialog box and Save Image as dialog box<br /></font>'''</div>
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| − | <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-indent: 0pt; text-transform: none; vertical-align: baseline"><u><font color="#ff1621"> <br /></font></u></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-indent: 0pt; text-transform: none; vertical-align: baseline"><u><font color="#ff1621"> [FAQMain.backup.html#998290 [[Image:FAQMain.backup19.gif]] ][FAQMain.backup.html#998290 Back to Questions]<br /></font></u></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000">
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MIPAV has four toolbars, which you can choose to display or hide at any time an image is open.
MIPAV allows you to keep a history of all of the actions-the algorithms and utilities-that you perform on images. The history includes the specific parameters that were set for the action. In addition, if you save the images as XML files, the history of actions and their parameters appears in in XMP file.
MIPAV ordinarily does not use the Macintosh standard file selector; instead, it shows a more traditionally UNIX way of looking at the file system on the Apple Macintosh.
When you using MIPAV, chances are that you are working with the same type of files every day or perhaps for a certain period of time. For example, suppose you normally work with medical files (files whose extensions are .dcm, .xml, .ima, .img, .mnc, .sig, .head, etc.). In this situation, when opening or saving images, you want to see only the medical files, not other file types. One of the ways of customizing MIPAV is the ability to show only specific types of files by default. See also: Image files supported by MIPAV.
