DTI Pipeline Tutorials

Main article: DTI Pipeline.

This is detailed tutorial(s) on how to use MIPAV DTI Pipeline. The page is currently under construction, but soon it will be populated with following tutorials:

Importing Philips PAR/REC files

Open A DWI volume of interest in MIPAV. Refer to Opening and loading image files if you are working with MIPAV for the first time.

In the Main menu, go to System Analysis > DTI Pipeline.

In the Import Data panel that appears, check the Use Active DWI box.

Then, upload the file that contains gradient information. MIPAV reads the gradient information from the image header, or it can read it from the B-matrix file uploaded by the user. The gradient (or B-matrix) information is then displayed in the Gradient table.

Note: for the full list of image types and how MIPAV reads the header information, refer to Image Types section.

Importing Siemens Mosaic DCM images

TBD.

Imploring Nifti with Philips Par File

TBD.

Video tutorials

TBD.

See also:

• Main article: DTI Pipeline
• DTI pipeline interface
• Understanding MIPAV capabilities
• Developing new tools using the API
• Overview of MIPAV Algorithms
• Cost functions used in MIPAV algorithms
• Interpolation methods used in MIPAV
• DTI Color Display
• DTI Estimate tensor
• Optimized automatic registration 3D