Difference between revisions of "DTI Pipeline Tutorials"
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'''Note:''' for the full list of image types and how MIPAV reads the header information, refer to [[DTI Pipeline#ImageTypes | Image Types]] section. | '''Note:''' for the full list of image types and how MIPAV reads the header information, refer to [[DTI Pipeline#ImageTypes | Image Types]] section. | ||
| − | <li> In the [[DTI pipeline interface#GradientCreator | Philips Gradient Creator Parameters box]], adjust the gradient parameters. Note that MIPAV can read the image information and will display an error message(s) if a parameter(s) is set to wrong value. Refer to [[DTI pipeline interface#GradientCreatorInput | Philips Gradient Creator Input parameters section]] for more information. And sample error messages and ways to put things right can be found in the [[DTI pipeline interface#ErrorMessages | Error Messages]] section. | + | <li> In the [[DTI pipeline interface#GradientCreator | Philips Gradient Creator Parameters box]], adjust the gradient parameters. Note that MIPAV can read the image information and will display an error message(s) if a parameter(s) is set to wrong value. Refer to the [[DTI pipeline interface#GradientCreatorInput | Philips Gradient Creator Input parameters section]] for more information. And sample error messages and ways to put things right can be found in the [[DTI pipeline interface#ErrorMessages | Error Messages]] section. |
Revision as of 18:15, 31 May 2012
Main article: DTI Pipeline.
This is detailed tutorial(s) on how to use MIPAV DTI Pipeline. The page is currently under construction, but soon it will be populated with following tutorials:
Contents
Importing Philips PAR/REC files
- Open A DWI volume of interest in MIPAV. Refer to Opening and loading image files if you are working with MIPAV for the first time.
- In the Main menu, go to System Analysis > DTI Pipeline.
- In the Import Data panel that appears, check the Use Active DWI box.
- Then, upload the file that contains gradient information. MIPAV reads the gradient information from the image header, or it can read it from the B-matrix file uploaded by the user. The gradient (or B-matrix) information is then populated in the Gradient table.
- In the Philips Gradient Creator Parameters box, adjust the gradient parameters. Note that MIPAV can read the image information and will display an error message(s) if a parameter(s) is set to wrong value. Refer to the Philips Gradient Creator Input parameters section for more information. And sample error messages and ways to put things right can be found in the Error Messages section.
Note: for the full list of image types and how MIPAV reads the header information, refer to Image Types section.
Importing Siemens Mosaic DCM images
TBD.
Imploring Nifti with Philips Par File
TBD.
Video tutorials
TBD.
