Difference between revisions of "Changing Image Datasets Using MIPAV Utilities"

From MIPAV
Jump to: navigation, search
(Created page with ' <div style="color: #000000; font-style: normal; font-weight: bold; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 24pt; text-align: right; text-decoration...')
 
m
 
(10 intermediate revisions by 2 users not shown)
Line 1: Line 1:
 +
'''In this chapter:'''<br />
 +
*[[Standard tasks provided through commands on the Utilities menu]]
 +
*[[Recording utilities usage with the history feature]]
 +
*[[4 D tools]]
 +
*[[Adding image margins]]
 +
*[[Copying images using the Clone command]]
 +
*[[Converting image datasets to different data types]]
 +
*[[Correcting image spacing]]
 +
*[[Cropping images]]
 +
*[[Masking (filling) images]]
 +
*[[Flipping images]]
 +
*[[Image Calculator]]
 +
**[[Image Calculator: OR ]]
 +
**[[Image Calculator: Advanced image calculator options]]
 +
*[[Image Math]]
 +
*[[Inverting the image]]
 +
*[[Matching images]]
 +
*[[Maximum Intensity Projection]]
 +
*[[Adding noise to images]]
 +
*[[Pad]]
 +
*[[Quantify Mask]]
 +
*[[Replacing pixel/voxel value in images]]
 +
*[[Rotating images]]
 +
*[[Slice tools]]
 +
*[[Inserting slices into image datasets]]
 +
*[[Subtract VOI Background]]
 +
*[[Standard tasks provided through commands on the Utilities menu]]
  
<div style="color: #000000;  font-style: normal; font-weight: bold; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 24pt; text-align: right; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">
+
'''[[Main Page#MainHelp|<< Main Help page]]'''
<a name="1071667"> </a>11  <br>
+
</div>
+
<div style="color: #000000;  font-style: normal; font-weight: bold; margin-bottom: 600pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: right; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">
+
<a name="1005641"> </a>Changing Image Datasets Using MIPAV Utilities  <span style="color: #000000;  font-style: normal; font-weight: bold; text-decoration: none; text-transform: none; vertical-align: baseline">. . .</span><br>
+
</div>
+
<div style="color: #0023a9;  font-style: normal; font-weight: bold; margin-bottom: 6pt; margin-left: 6pt; margin-right: 6pt; margin-top: 6pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">
+
<a name="1051515"> </a>In this chapter<br>
+
</div>
+
<div style="color: #0023a9;  font-style: normal; font-weight: normal; margin-bottom: 1pt; margin-left: 18pt; margin-right: 6pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -12pt; text-transform: none; vertical-align: baseline">
+
<a name="1296167"> </a><a href="MIPAV_Utilities.html#1191929">&quot;Standard tasks provided through commands on the Utilities menu&quot; on page&#160;401</a><br>
+
</div>
+
<div style="color: #0023a9;  font-style: normal; font-weight: normal; margin-bottom: 1pt; margin-left: 18pt; margin-right: 6pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -12pt; text-transform: none; vertical-align: baseline">
+
<a name="1196839"> </a><a href="MIPAV_Utilities.html#1006375">&quot;Recording utilities usage with the history feature&quot; on page&#160;404</a><br>
+
</div>
+
<div style="color: #0023a9;  font-style: normal; font-weight: normal; margin-bottom: 1pt; margin-left: 18pt; margin-right: 6pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -12pt; text-transform: none; vertical-align: baseline">
+
<a name="1191517"> </a><a href="MIPAV_Utilities.html#1189489">&quot;4 D tools&quot; on page&#160;405</a><br>
+
</div>
+
<div style="color: #0023a9;  font-style: normal; font-weight: normal; margin-bottom: 1pt; margin-left: 18pt; margin-right: 6pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -12pt; text-transform: none; vertical-align: baseline">
+
<a name="1191523"> </a><a href="MIPAV_Utilities.html#1203929">&quot;Adding image margins&quot; on page&#160;412</a><br>
+
</div>
+
<div style="color: #0023a9;  font-style: normal; font-weight: normal; margin-bottom: 1pt; margin-left: 18pt; margin-right: 6pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -12pt; text-transform: none; vertical-align: baseline">
+
<a name="1191528"> </a><a href="MIPAV_Utilities.html#1006484">&quot;Copying images using the Clone command&quot; on page&#160;414</a><br>
+
</div>
+
<div style="color: #0023a9;  font-style: normal; font-weight: normal; margin-bottom: 1pt; margin-left: 18pt; margin-right: 6pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -12pt; text-transform: none; vertical-align: baseline">
+
<a name="1191572"> </a><a href="MIPAV_Utilities.html#1165547">&quot;Converting image datasets to different data types&quot; on page&#160;414</a><br>
+
</div>
+
<div style="color: #0023a9;  font-style: normal; font-weight: normal; margin-bottom: 1pt; margin-left: 18pt; margin-right: 6pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -12pt; text-transform: none; vertical-align: baseline">
+
<a name="1191548"> </a><a href="MIPAV_Utilities.html#1169542">&quot;Correcting image spacing&quot; on page&#160;423</a><br>
+
</div>
+
<div style="color: #0023a9;  font-style: normal; font-weight: normal; margin-bottom: 1pt; margin-left: 18pt; margin-right: 6pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -12pt; text-transform: none; vertical-align: baseline">
+
<a name="1191591"> </a><a href="MIPAV_Utilities.html#1172273">&quot;Cropping images&quot; on page&#160;431</a><br>
+
</div>
+
<div style="color: #0023a9;  font-style: normal; font-weight: normal; margin-bottom: 1pt; margin-left: 18pt; margin-right: 6pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -12pt; text-transform: none; vertical-align: baseline">
+
<a name="1191596"> </a><a href="MIPAV_Utilities.html#1173255">&quot;Masking (filling) images&quot; on page&#160;434</a><br>
+
</div>
+
<div style="color: #0023a9;  font-style: normal; font-weight: normal; margin-bottom: 1pt; margin-left: 18pt; margin-right: 6pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -12pt; text-transform: none; vertical-align: baseline">
+
<a name="1191601"> </a><a href="MIPAV_Utilities.html#1173868">&quot;Flipping images&quot; on page&#160;436</a><br>
+
</div>
+
<div style="color: #0023a9;  font-style: normal; font-weight: normal; margin-bottom: 1pt; margin-left: 18pt; margin-right: 6pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -12pt; text-transform: none; vertical-align: baseline">
+
<a name="1191553"> </a><a href="MIPAV_Utilities.html#1207373">&quot;Image Calculator&quot; on page&#160;438</a> and <a href="MIPAV_Utilities.html#1296428">page&#160;451</a><br>
+
</div>
+
<div style="color: #0023a9;  font-style: normal; font-weight: normal; margin-bottom: 1pt; margin-left: 18pt; margin-right: 6pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -12pt; text-transform: none; vertical-align: baseline">
+
<a name="1191628"> </a><a href="MIPAV_Utilities.html#1177106">&quot;Image Math&quot; on page&#160;453</a><br>
+
</div>
+
<div style="color: #0023a9;  font-style: normal; font-weight: normal; margin-bottom: 1pt; margin-left: 18pt; margin-right: 6pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -12pt; text-transform: none; vertical-align: baseline">
+
<a name="1191633"> </a><a href="MIPAV_Utilities.html#1180508">&quot;Inverting the image&quot; on page&#160;457</a><br>
+
</div>
+
<div style="color: #0023a9;  font-style: normal; font-weight: normal; margin-bottom: 1pt; margin-left: 18pt; margin-right: 6pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -12pt; text-transform: none; vertical-align: baseline">
+
<a name="1191638"> </a><a href="MIPAV_Utilities.html#1180988">&quot;Matching images&quot; on page&#160;458</a><br>
+
</div>
+
<div style="color: #0023a9;  font-style: normal; font-weight: normal; margin-bottom: 1pt; margin-left: 18pt; margin-right: 6pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -12pt; text-transform: none; vertical-align: baseline">
+
<a name="1191643"> </a><a href="MIPAV_Utilities.html#1223070">&quot;Maximum Intensity Projection&quot; on page&#160;461</a><br>
+
</div>
+
<div style="color: #0023a9;  font-style: normal; font-weight: normal; margin-bottom: 1pt; margin-left: 18pt; margin-right: 6pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -12pt; text-transform: none; vertical-align: baseline">
+
<a name="1191648"> </a><a href="MIPAV_Utilities.html#1182119">&quot;Adding noise to images&quot; on page&#160;464</a><br>
+
</div>
+
<div style="color: #0023a9;  font-style: normal; font-weight: normal; margin-bottom: 1pt; margin-left: 18pt; margin-right: 6pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -12pt; text-transform: none; vertical-align: baseline">
+
<a name="1191653"> </a><a href="MIPAV_Utilities.html#1204487">&quot;Pad&quot; on page&#160;467</a><br>
+
</div>
+
<div style="color: #0023a9;  font-style: normal; font-weight: normal; margin-bottom: 1pt; margin-left: 18pt; margin-right: 6pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -12pt; text-transform: none; vertical-align: baseline">
+
<a name="1191658"> </a><a href="MIPAV_Utilities.html#1182469">&quot;Quantify Mask&quot; on page&#160;468</a><br>
+
</div>
+
<div style="color: #0023a9;  font-style: normal; font-weight: normal; margin-bottom: 1pt; margin-left: 18pt; margin-right: 6pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -12pt; text-transform: none; vertical-align: baseline">
+
<a name="1191663"> </a><a href="MIPAV_Utilities.html#1184590">&quot;Replacing pixel/voxel value in images&quot; on page&#160;471</a><br>
+
</div>
+
<div style="color: #0023a9;  font-style: normal; font-weight: normal; margin-bottom: 1pt; margin-left: 18pt; margin-right: 6pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -12pt; text-transform: none; vertical-align: baseline">
+
<a name="1191731"> </a><a href="MIPAV_Utilities.html#1185153">&quot;Rotating images&quot; on page&#160;473</a><br>
+
</div>
+
<div style="color: #0023a9;  font-style: normal; font-weight: normal; margin-bottom: 1pt; margin-left: 18pt; margin-right: 6pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -12pt; text-transform: none; vertical-align: baseline">
+
<a name="1191913"> </a><a href="MIPAV_Utilities.html#1183533">&quot;Slice tools&quot; on page&#160;475</a><br>
+
</div>
+
<div style="color: #0023a9;  font-style: normal; font-weight: normal; margin-bottom: 1pt; margin-left: 18pt; margin-right: 6pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -12pt; text-transform: none; vertical-align: baseline">
+
<a name="1193043"> </a><a href="MIPAV_Utilities.html#1189070">&quot;Inserting slices into image datasets&quot; on page&#160;481</a><br>
+
</div>
+
<div style="color: #0023a9;  font-style: normal; font-weight: normal; margin-bottom: 1pt; margin-left: 6pt; margin-right: 6pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">
+
<a name="1191917"> </a><a href="MIPAV_Utilities.html#1201306">&quot;Subtract VOI Background&quot; on page&#160;488</a><br>
+
</div>
+
<div style="color: #000000;  font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">
+
<a name="1200435"> </a><br>
+
</div>
+
[[Standard tasks provided through commands on the Utilities menu]]
+

Latest revision as of 18:29, 18 September 2012

In this chapter:

<< Main Help page