Package gov.nih.mipav.model.algorithms

Class SphericalConformalMap

java.lang.Object

java.lang.Thread

gov.nih.mipav.model.algorithms.AlgorithmBase

gov.nih.mipav.model.algorithms.SphericalConformalMap

All Implemented Interfaces:

java.awt.event.ActionListener, java.awt.event.WindowListener, java.lang.Runnable, java.util.EventListener

public class SphericalConformalMap
extends AlgorithmBase

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
private class	SphericalConformalMap.indexValueComparator
private class	SphericalConformalMap.indexValueItem
class	SphericalConformalMap.sparseMatrix

Nested classes/interfaces inherited from class java.lang.Thread

java.lang.Thread.State, java.lang.Thread.UncaughtExceptionHandler

Field Summary

Fields

Modifier and Type	Field	Description
private java.lang.String	fileDir
private java.lang.String	fileName

Fields inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

destFlag, destImage, image25D, mask, maxProgressValue, minProgressValue, multiThreadingEnabled, nthreads, progress, progressModulus, progressStep, runningInSeparateThread, separable, srcImage, threadStopped

Fields inherited from class java.lang.Thread

MAX_PRIORITY, MIN_PRIORITY, NORM_PRIORITY

Constructor Summary

Constructors

Constructor	Description
SphericalConformalMap()
SphericalConformalMap(java.lang.String fileName, java.lang.String fileDir)

Method Summary

Modifier and Type	Method	Description
(package private) double[]	angle_distortion(double[][] vorig, int[][] f, double[][] maporig)
(package private) double[]	area_distortion(double[][] vorig, int[][] f, double[][] maporig)
(package private) double[]	area_map(int[][] f, SuperLU.doublecomplex[] z, double[] x)
(package private) SuperLU.doublecomplex[]	beltrami_coefficient(double[][] v, int[][] f, double[][] map)
(package private) SphericalConformalMap.sparseMatrix	cotangent_laplacian(double[][] v, int[][] f)
(package private) double	d_area(int[][] f, SuperLU.doublecomplex[] z, double[] x, double[] area_v)
(package private) double[]	face_area(int[][] f, double[][] v)
(package private) double	finitemean(double[] A)
(package private) double[][]	linear_beltrami_solver(double[][] v, int[][] f, SuperLU.doublecomplex[] mu, int[] landmark, double[][] target)
(package private) double[][]	mobius_area_correction(double[] x, double[][] v, int[][] f, double[][] map)
void	runAlgorithm()	Actually runs the algorithm.
private double[][]	spherical_conformal_map(double[][] v, int[][] f)
(package private) double[][]	spherical_tutte_map(int[][] f, int bigtri)
(package private) double[][]	stereographic(double[][] u)
void	testRoutine()

Methods inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

actionPerformed, addListener, addProgressChangeListener, calculateImageSize, calculatePrincipleAxis, computeElapsedTime, computeElapsedTime, convertIntoFloat, delinkProgressToAlgorithm, delinkProgressToAlgorithmMulti, displayError, errorCleanUp, finalize, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, generateProgressValues, getDestImage, getElapsedTime, getMask, getMaxProgressValue, getMinProgressValue, getNumberOfThreads, getProgress, getProgressChangeListener, getProgressChangeListeners, getProgressModulus, getProgressStep, getProgressValues, getSrcImage, isCompleted, isImage25D, isMultiThreadingEnabled, isRunningInSeparateThread, isThreadStopped, linkProgressToAlgorithm, linkProgressToAlgorithm, makeProgress, notifyListeners, removeListener, removeProgressChangeListener, run, setCompleted, setImage25D, setMask, setMaxProgressValue, setMinProgressValue, setMultiThreadingEnabled, setNumberOfThreads, setProgress, setProgressModulus, setProgressStep, setProgressValues, setProgressValues, setRunningInSeparateThread, setSrcImage, setStartTime, setThreadStopped, startMethod, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class java.lang.Thread

activeCount, checkAccess, clone, countStackFrames, currentThread, dumpStack, enumerate, getAllStackTraces, getContextClassLoader, getDefaultUncaughtExceptionHandler, getId, getName, getPriority, getStackTrace, getState, getThreadGroup, getUncaughtExceptionHandler, holdsLock, interrupt, interrupted, isAlive, isDaemon, isInterrupted, join, join, join, onSpinWait, resume, setContextClassLoader, setDaemon, setDefaultUncaughtExceptionHandler, setName, setPriority, setUncaughtExceptionHandler, sleep, sleep, start, stop, suspend, toString, yield

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

fileName

private java.lang.String fileName

fileDir

private java.lang.String fileDir

Constructor Detail

SphericalConformalMap

public SphericalConformalMap()

SphericalConformalMap

public SphericalConformalMap(java.lang.String fileName,
                             java.lang.String fileDir)

Method Detail

testRoutine

public void testRoutine()

runAlgorithm

public void runAlgorithm()

Description copied from class: AlgorithmBase

Actually runs the algorithm. Implemented by inheriting algorithms.

Specified by:

runAlgorithm in class AlgorithmBase

spherical_conformal_map

private double[][] spherical_conformal_map(double[][] v,
                                           int[][] f)

linear_beltrami_solver

double[][] linear_beltrami_solver(double[][] v,
                                  int[][] f,
                                  SuperLU.doublecomplex[] mu,
                                  int[] landmark,
                                  double[][] target)

beltrami_coefficient

SuperLU.doublecomplex[] beltrami_coefficient(double[][] v,
                                             int[][] f,
                                             double[][] map)

spherical_tutte_map

double[][] spherical_tutte_map(int[][] f,
                               int bigtri)

cotangent_laplacian

SphericalConformalMap.sparseMatrix cotangent_laplacian(double[][] v,
                                                       int[][] f)

face_area

double[] face_area(int[][] f,
                   double[][] v)

area_distortion

double[] area_distortion(double[][] vorig,
                         int[][] f,
                         double[][] maporig)

stereographic

double[][] stereographic(double[][] u)

mobius_area_correction

double[][] mobius_area_correction(double[] x,
                                  double[][] v,
                                  int[][] f,
                                  double[][] map)

d_area

double d_area(int[][] f,
              SuperLU.doublecomplex[] z,
              double[] x,
              double[] area_v)

area_map

double[] area_map(int[][] f,
                  SuperLU.doublecomplex[] z,
                  double[] x)

finitemean

double finitemean(double[] A)

angle_distortion

double[] angle_distortion(double[][] vorig,
                          int[][] f,
                          double[][] maporig)