java.lang.Object
- java.awt.Component
- - java.awt.Container
  - - java.awt.Window
    - - java.awt.Frame
      - javax.swing.JFrame
        
        gov.nih.mipav.view.ViewJFrameBase
        
        gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView

All Implemented Interfaces:

ViewImageUpdateInterface, java.awt.event.ActionListener, java.awt.event.ComponentListener, java.awt.event.ItemListener, java.awt.event.MouseListener, java.awt.event.WindowListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, java.util.EventListener, javax.accessibility.Accessible, javax.swing.event.ChangeListener, javax.swing.RootPaneContainer, javax.swing.WindowConstants
```
public class ViewJFrameVolumeView
extends ViewJFrameBase
implements java.awt.event.MouseListener, java.awt.event.ItemListener, javax.swing.event.ChangeListener
```
The volume view frame of the visualization. The frame includes the surface renderer, the raycast renderer, the shearwarp renderer and the flythru renderer.

Author:

Ruida Cheng

See Also:

Serialized Form

Nested Class Summary

Nested Classes
Modifier and Type Class Description

(package private) class ViewJFrameVolumeView.TabbedItem
Item to hold tab name and corresponding panel.
- Nested classes/interfaces inherited from class javax.swing.JFrame
  javax.swing.JFrame.AccessibleJFrame
- Nested classes/interfaces inherited from class java.awt.Frame
  java.awt.Frame.AccessibleAWTFrame
- Nested classes/interfaces inherited from class java.awt.Window
  java.awt.Window.AccessibleAWTWindow, java.awt.Window.Type
- Nested classes/interfaces inherited from class java.awt.Container
  java.awt.Container.AccessibleAWTContainer
- Nested classes/interfaces inherited from class java.awt.Component
  java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

Fields
Modifier and Type	Field	Description
`private boolean`	`axialOrientation`	Indicates that image orientation is unknown type or not.
`static int`	`BRAINSURFACE_FLATTENER`	DOCUMENT ME!
`private MjCorticalAnalysis`	`brainsurfaceFlattenerRender`	Rendering the brainsurfaceFlattener objects.
`private javax.swing.JPanel`	`cameraPanel`	DOCUMENT ME!
`private javax.swing.JPanel`	`clipBox`	DOCUMENT ME!
`private javax.swing.JButton`	`clipButton`	Button to invoke all the six clipping planes.
`private javax.swing.JButton`	`clipDisableButton`	Button to disable all the six clipping planes.
`private javax.swing.JButton`	`clipMaskButton`	Button to crop the clip volume.
`private javax.swing.JButton`	`clipMaskUndoButton`	Button to undo crop the clip volume.
`private javax.swing.JPanel`	`clipPanel`	DOCUMENT ME!
`private javax.swing.JButton`	`clipPlaneButton`	Button to invoke clipping planes.
`private javax.swing.JButton`	`clipSaveButton`	Button to save clipped region.
`private javax.swing.border.Border`	`compound`	Panel Border view.
`protected java.awt.GraphicsConfiguration`	`config`	Configuration param, which will pass down to each render's constructor.
`private javax.swing.JPanel`	`displayPanel`	DOCUMENT ME!
`private javax.swing.JSplitPane`	`dualImagePane`	dual image pane that holds the left and right panel.
`private javax.swing.JPanel`	`dualImagePanel`	The image panel to hold two Canvas3D.
`private javax.swing.JPanel`	`dualLeftPanel`	Left panel of the dual panel view.
`static int`	`DUALPANEL`	DOCUMENT ME!
`private javax.swing.JPanel`	`dualRightPanel`	Right panel of the dual panel view.
`static int`	`ENDOSCOPY`	DOCUMENT ME!
`private javax.swing.border.Border`	`etchedBorder`	Panel Border view.
`private boolean`	`firstTimeVolView`	Keep track of whether we're switching to the volume renderer for the first time.
`private JPanelVirtualEndoscopySetup`	`flythruControl`	Fly through setup control panel.
`private JPanelFlythruMove`	`flythruMoveControl`	Fly through movement control panel.
`private javax.swing.JPanel`	`flythruMovePanel`	View panel contains the fly thru control panel.
`private FlythruRender.SetupOptions`	`flythruOptions`	Fly through options.
`private javax.swing.JPanel`	`flythruPanel`	Fly through panel.
`private FlythruRender`	`flythruRender`	Reference to fly through renderer.
`private javax.swing.JButton`	`flythruSurfaceButton`	Surface load button.
`private java.util.Vector`	`flythruTabVector`	DOCUMENT ME!
`private javax.swing.JToolBar`	`flyThruToolbar`	Flythru toolbar.
`private javax.swing.JPanel`	`histoLUTPanel`	Control panel for the surface renderer.
`private ModelImage`	`imageAOriginal`	Reference to the imageA original copy.
`private int`	`imageOrientation`	Image orientation: coronal, sagittal, axial, unknown.
`private javax.swing.JPanel`	`imagePanel`	The image panel to hold one Canvas3D.
`private JDialogIntensityPaint`	`intensityDialog`	DOCUMENT ME!
`private boolean`	`isBrainsurfaceFlattenerEnable`	Indicate if the brainsurface flattener render is enabled from the resample dialog or not.
`private boolean`	`isEndoscopyEnable`	Indicate if the fly through render is enabled from the resample dialog or not.
`protected ModelImage`	`isoImageA`	Isotropic version image A, B, used by the shear warp renderer.
`protected ModelImage`	`isoImageB`	Isotropic version image A, B, used by the shear warp renderer.
`private boolean`	`isRayCastEnable`	Indicate if the raycast render is enabled from the resample dialog or not.
`private boolean`	`isShearWarpEnable`	Indicate if the shear warp render is enabled from the resample dialog or not.
`private boolean`	`isSurfaceRenderEnable`	Indicate if the surface render is enabled from the resample dialog or not.
`private boolean`	`isSurfaceViewEnable`	Indicate if the surface view is enabled from the resample dialog or not.
`private int`	`leftPanelRenderMode`	The left panel renderer mode.
`private javax.swing.JPanel`	`lightPanel`	DOCUMENT ME!
`private javax.swing.border.Border`	`loweredbevel`	Panel Border view.
`private PlaneRender[]`	`m_akPlaneRender`	The three slice views displayed as texture-mapped polygons:.
`private javax.swing.JPanel`	`m_kBrainsurfaceFlattenerPanel`	Control panels for the Brainsurface Flattener:.
`private javax.swing.JPanel`	`m_kGeodesicPanel`	Control panel for drawing geodesic curves.
`private javax.swing.JPanel`	`m_kSculptPanel`	Control panel for volume sculpting.
`private int`	`maxPanelWidth`	The max width of the control panels.
`private javax.swing.JMenuBar`	`menuBar`	Menu bar.
`protected ViewMenuBuilder`	`menuObj`	Menu items storage.
`protected javax.swing.JLabel`	`modelViewLabel`	Labels for the current position in 3D ModelView coordinates:.
`protected javax.swing.JLabel[]`	`modelViewLabelVals`	DOCUMENT ME!
`private javax.swing.JPanel`	`mousePanel`	DOCUMENT ME!
`static int`	`NONE`	Render mode values.
`private JDialogOpacityControls`	`opacityDialog`	DOCUMENT ME!
`private javax.swing.JPanel`	`opacityPanel`	DOCUMENT ME!
`protected int[]`	`orient`	Orientations of the three axes.
`private ModelImage`	`paddingImageA`	Padding imageA with blank images feeding.
`private ModelImage`	`paddingImageB`	Padding imageB with blank images feeding.
`private JDialogPaintGrow`	`paintGrowDialog`	Control panels of the triplanar view.
`private JFrameHistogram`	`panelHistogram`	LUT control panel of the gray scale image.
`(package private) javax.swing.JPanel`	`panelLabels`	Panel containing the position labels:.
`protected javax.swing.JPanel`	`panelToolbar`	Panel that holds the toolbars.
`private javax.swing.JToggleButton`	`parallelButton`	Rendering parallel rotation button.
`protected javax.swing.JLabel`	`patientSliceLabel`	Labels for the current position in PatientSlice coordinates:.
`protected javax.swing.JLabel[]`	`patientSliceLabelVals`	DOCUMENT ME!
`private javax.swing.border.Border`	`pressedBorder`	Panel Border view.
`private javax.swing.JPanel`	`probePanel`	DOCUMENT ME!
`private javax.swing.JRadioButton`	`radioCOMPOSITE`	Radio button of the COMPOSITE mode option.
`private javax.swing.JRadioButton`	`radioCOMPOSITEShear`	Radio button of the COMPOSITE mode option.
`private javax.swing.JRadioButton`	`radioMIP`	Radio button of the MIP mode option.
`private javax.swing.JRadioButton`	`radioMIPShear`	Radio button of the MIP mode option.
`private javax.swing.JRadioButton`	`radioSURFACE`	Radio button of the SURFACE mode option.
`private javax.swing.JRadioButton`	`radioSURFACEFAST`	Radio button of the SURFACE mode option.
`private javax.swing.JRadioButton`	`radioSURFACEShear`	Radio button of the SURFACE mode option.
`private javax.swing.JRadioButton`	`radioSurrenderCOMPOSITE`	Radio button of the surface render composite mode.
`private javax.swing.JRadioButton`	`radioSurrenderLIGHT`	Radio button of the surface render lighting mode.
`private javax.swing.JRadioButton`	`radioXRAY`	Radio button of the XRAY mode option.
`private javax.swing.JRadioButton`	`radioXRAYShear`	Radio button of the XRAY mode option.
`private javax.swing.border.Border`	`raisedbevel`	Panel Border view.
`static int`	`RAYCAST`	DOCUMENT ME!
`private javax.swing.JPanel`	`raycastCameraPanel`	DOCUMENT ME!
`private javax.swing.JPanel`	`raycastOptionsPanel`	Control panels for the raycast render.
`private VolumeRendererRayCast`	`raycastRender`	DOCUMENT ME!
`private java.util.Vector`	`raycastTabVector`	DOCUMENT ME!
`private javax.swing.JToolBar`	`rayCastToolBar`	Raycast toolbar.
`private javax.swing.border.Border`	`redBorder`	Panel Border view.
`protected static javax.swing.JProgressBar`	`rendererProgressBar`	The small bar on the top right corner the volume view frame.
`private JDialogVolViewResample`	`resampleDialog`	Reference to resample dialog, use to null out the resample dialog in this frame.
`private javax.swing.JButton`	`rfaButton`	Button for RFA.
`private javax.swing.JButton`	`rfaSeparator`	RFA separator.
`protected ModelRGB`	`RGBTA`	Lookup table of the color imageA, B.
`protected ModelRGB`	`RGBTB`	Lookup table of the color imageA, B.
`private javax.swing.JSplitPane`	`rightPane`	The view pane that contains the image view and tri-planar view panels.
`private int`	`rightPanelRenderMode`	The right panel renderer mode.
`private int`	`screenHeight`	Screen width, screen height.
`private int`	`screenWidth`	Screen width, screen height.
`private int`	`sculptHeight`	Sculpt region height.
`private int`	`sculptWidth`	Sculpt region width.
`private static long`	`serialVersionUID`	Use serialVersionUID for interoperability.
`protected java.awt.Font`	`serif12`	Fonts, same as `MipavUtil.font12` and `MipavUtil.font12B.`
`protected java.awt.Font`	`serif12B`	Fonts, same as `MipavUtil.font12` and `MipavUtil.font12B.`
`static int`	`SHEARWARP`	DOCUMENT ME!
`private javax.swing.JPanel`	`shearwarpCameraPanel`	DOCUMENT ME!
`private javax.swing.JPanel`	`shearwarpOptionsPanel`	Control panels for the shearwarp render.
`private VolumeRendererShearWarp`	`shearwarpRender`	DOCUMENT ME!
`private java.util.Vector`	`shearwarpTabVector`	DOCUMENT ME!
`private javax.swing.JToolBar`	`shearWarpToolBar`	Shearwarp toolbar.
`private javax.swing.JPanel`	`slicePanel`	DOCUMENT ME!
`private int`	`storeTabbedPaneIndex`	Previoius tab index recorder.
`static int`	`SURFACE`	DOCUMENT ME!
`private javax.swing.JPanel`	`surfacePanel`	DOCUMENT ME!
`static int`	`SURFACEVIEW`	DOCUMENT ME!
`private SurfaceRender`	`surRender`	Three types of renderer.
`private java.util.Vector`	`surTabVector`	For each render, use the vector to store the currently active tabs.
`private SurfaceView`	`surView`	Surface View reference
`private ViewToolBarBuilder`	`toolbarBuilder`	Toolbar builder reference.
`private javax.swing.JPanel`	`triImagePanel`	Tri image planar render panels.
`private javax.swing.JToggleButton`	`unparallelButton`	Rendering unparallel rotaion button.
`private javax.swing.JPanel`	`viewPanel`	DOCUMENT ME!
`private javax.swing.JToolBar`	`viewToolBar`	The top one render view switch toolbar.
`private javax.swing.JToolBar`	`volToolBar`	Surface Render toolbar.

Fields inherited from class gov.nih.mipav.view.ViewJFrameBase
absoluteGoToButton, absoluteGoToPanel, absoluteLabel, absoluteLabelVals, absolutePanel, absoluteXLabel, absoluteXTextField, absoluteYLabel, absoluteYTextField, absoluteZLabel, absoluteZTextField, alphaBlend, defaultLUTa, defaultLUTb, displayMode, IMAGE_A, IMAGE_A_B, IMAGE_B, imageA, imageB, isClosing, linkedScrolling, linkFrame, linkTriFrame, LUTa, LUTb, progressBar, scannerLPS_APLabel, scannerLPS_APTextField, scannerLPS_GoToButton, scannerLPS_GoToPanel, scannerLPS_ISLabel, scannerLPS_ISTextField, scannerLPS_RLLabel, scannerLPS_RLTextField, scannerLPSLabel, scannerLPSLabelVals, scannerLPSPanel, scannerRAS_APLabel, scannerRAS_APTextField, scannerRAS_GoToButton, scannerRAS_GoToPanel, scannerRAS_ISLabel, scannerRAS_ISTextField, scannerRAS_RLLabel, scannerRAS_RLTextField, scannerRASLabel, scannerRASLabelVals, scannerRASPanel, scannerTabbedPane, tabbedPane, talGoToButton, talGoToPanel, talXLabel, talXTextField, talYLabel, talYTextField, talZLabel, talZTextField, userInterface, zoomMode

Fields inherited from class javax.swing.JFrame
accessibleContext, rootPane, rootPaneCheckingEnabled

Fields inherited from class java.awt.Frame
CROSSHAIR_CURSOR, DEFAULT_CURSOR, E_RESIZE_CURSOR, HAND_CURSOR, ICONIFIED, MAXIMIZED_BOTH, MAXIMIZED_HORIZ, MAXIMIZED_VERT, MOVE_CURSOR, N_RESIZE_CURSOR, NE_RESIZE_CURSOR, NORMAL, NW_RESIZE_CURSOR, S_RESIZE_CURSOR, SE_RESIZE_CURSOR, SW_RESIZE_CURSOR, TEXT_CURSOR, W_RESIZE_CURSOR, WAIT_CURSOR

Fields inherited from class java.awt.Component
BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver
ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Fields inherited from interface javax.swing.WindowConstants
DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, EXIT_ON_CLOSE, HIDE_ON_CLOSE

Constructor Summary

Constructors
Constructor	Description
`ViewJFrameVolumeView(ModelImage _imageA, ModelLUT LUTa, ModelRGB _RGBTA, ModelImage _imageB, ModelLUT LUTb, ModelRGB _RGBTB, int _leftPanelRenderMode, int _rightPanelRenderMode, JDialogVolViewResample _resampleDialog)`	Make a volume rendering frame, which contains the toolbars on the top, control panel on the left, the volume rendering panel on the right, and the three orthogonal view ( axial, sagittal, coronal, views) on the bottom right.

Method Summary

All Methods Static Methods Instance Methods Concrete Methods Deprecated Methods
Modifier and Type	Method	Description
`void`	`actionPerformed(java.awt.event.ActionEvent event)`	Calls various methods depending on the action.
`void`	`addAttachedSurfaces()`	Add any attached surfaces the current image has in its file info (if the file info is in the xml format).
`void`	`addBranch(javax.media.j3d.BranchGroup kBranch, ModelTriangleMesh kMesh, javax.vecmath.Point3f kCenter)`	Updates the surRender -- adds a BranchGroup to the main Display.
`void`	`addFlightPath()`	Updates the surRender to display the flythru flight path from the flythruRender.
`void`	`addSurface(java.lang.String dir, java.io.File file)`	Adding surface to the 3D texuture volume.
`private void`	`addToolbar()`	Add surface volume renderer control buttons.
`void`	`buildBrainsurfaceFlattener()`	Build the Brainsurface Flattener panel:
`void`	`buildCameraPanel()`	Build the camera control panel for the surface render.
`void`	`buildClipPanel()`	Build the clipping control panel for the surface render.
`void`	`buildDisplayPanel()`	Build the display control panel for the surface render.
`void`	`buildFlythruMovePanel()`	Build the flythru move control panel.
`void`	`buildFlythruPanel()`	Build the flythru control panel.
`private void`	`buildFlyThruToolbar()`	Build the fly through toolbar.
`void`	`buildGeodesic()`	Build the Geodesic control panel.
`void`	`buildHistoLUTPanel()`	The histogram control panel of the lookup table.
`void`	`buildLabelPanel()`	The label panel of the x, y, z slider position.
`void`	`buildLightPanel()`	Build the light control panel for the surface render.
`protected javax.swing.JMenuBar`	`buildMenu()`	Builds menus for the tri-planar view.
`void`	`buildMousePanel()`	Build the mouse control panel for the raycast render.
`void`	`buildOpacityPanel()`	Build the volume opacity control panel for the surface render.
`void`	`buildProbePanel()`	Build the adding surface control panel for the surface render.
`void`	`buildRayCastCameraPanel()`	Build the camera control panel for the raycast render.
`void`	`buildRayCastOptions()`	Build the view control panel for the raycast render.
`private void`	`buildRayCastToolbar()`	Build the raycast toolbar.
`void`	`buildSculpt()`	Build the Sculpturing control panel.
`void`	`buildShearWarpCameraPanel()`	Build the camera control panel for the shearwarp render.
`void`	`buildShearWarpOptions()`	Build the view control panel for the shearwarp render.
`private void`	`buildShearWarpToolbar()`	Build the shearwarp toolbar.
`void`	`buildSlicePanel()`	Build the slices control panel for the surface render.
`void`	`buildSurfacePanel()`	Build the adding surface control panel for the surface render.
`private void`	`buildSurfaceViewToolbar()`	The the top one volume view toolbar.
`private void`	`buildSurRenderToolbar()`	Build the surface render toolbar.
`protected void`	`buildToolbars()`	Builds the toolbars for the tri-planar view.
`void`	`buildViewPanel()`	Build the view control panel for the surface render.
`private void`	`buildViewToolbar()`	The the top one volume view toolbar.
`void`	`calcShearWarpImage(ModelImage _imageA, ModelImage _imageB)`	Transform the image into shear warp image, which has the same resolution.
`void`	`componentResized(java.awt.event.ComponentEvent event)`	Method called when a component resize event is generated.
`protected void`	`configureFrame()`	Constructs main frame structures for image canvas.
`void`	`constructRenderers()`	Construct the volume rendering methods based on the choices made from the resample dialog.
`void`	`disableTargetPointPicking()`	Disable target point for the RFA probe from within the plane renderer.
`void`	`disposeLocal(boolean flag)`	Dispose memory.
`void`	`doPadding(int[] extents, int[] volExtents)`	Insert the blank images to the end of image.
`void`	`doResample(int[] volExtents, float[] newRes, boolean forceResample, int nDim, int iFilterType)`	Resample the images to power of 2.
`void`	`drawBrainSurfaceFlattenerPoint(javax.vecmath.Point3f kStart, int[] aiIndex, int iWhich)`	Draws the point selected on the Mesh for the brainsurfaceFlattener.
`void`	`drawRFAPoint(javax.vecmath.Point3f kPoint)`	Called from the PlaneRender class when a new Probe Entry Point has been selected.
`private void`	`enableDualPanelRender()`	Enable dual panel renders.
`private void`	`enableFlyThruRender()`	Enable the fly through frame layout.
`private void`	`enableShearWarpRender()`	Enable the shear warp render.
`private void`	`enableSurfaceRender()`	Enable surface render.
`void`	`enableTargetPointPicking()`	Enable target point for the RFA probe from within the plane renderer.
`private void`	`enableVolumeRender()`	Enable volume render.
`protected void`	`finalize()`	Cleans up memory from gc.
`int`	`getBlendValue()`	Get the imageA and imageB blending value from the PlaneRender.
`ViewControlsImage`	`getControls()`	Required by the parent super class, do nothing.
`JFrameHistogram`	`getHistogramDialog()`
`ModelImage`	`getHistoLUTActiveImage()`	Returns which image is active in the HistoLUT -- either imageA or imageB.
`ModelImage`	`getHistoRGBActiveImage()`	Returns which image is active in the HistoRGB -- either imageA or imageB.
`ModelImage`	`getImageA()`	Get the image A reference.
`ModelImage`	`getImageB()`	Get the imageB reference.
`ModelImage`	`getImageOriginal()`	Get a reference to the original image we passed into the renderer from MIPAV (non-cloned).
`JPanelHistoLUT`	`getLUTDialog()`	Deprecated.
`JPanelProbe`	`getProbeDialog()`	Return the rfa probe panel.
`static javax.swing.JProgressBar`	`getRendererProgressBar()`	Retrieve the progress bar used in the volume renderer (the one in the upper right hand corner).
`JPanelHistoRGB`	`getRGBDialog()`	Deprecated.
`ModelImage`	`getSegmentationImage()`	Return the segmentation region map image which contains info on where the vascualture, etc are located.
`javax.swing.JSplitPane`	`getViewPanel()`	Return the image panel.
`void`	`insertFlythruTab(java.lang.String _name, javax.swing.JPanel _panel)`	Insert tab into the flythru tab list ( flythru render ) for backup.
`void`	`insertRaycastTab(java.lang.String _name, javax.swing.JPanel _panel)`	Insert tab into the raycast tab list ( raycast render ) for backup.
`void`	`insertShearwarpTab(java.lang.String _name, javax.swing.JPanel _panel)`	Insert tab into the shear warp tab list ( shear warp render ) for backup.
`void`	`insertSurfaceTab(java.lang.String _name, javax.swing.JPanel _panel)`	Insert tab into the surface tab list ( SurfaceRender ) for backup.
`void`	`insertTab(java.lang.String _name, javax.swing.JPanel _panel)`	Insert the new tab into the current visible tab list.
`boolean`	`isBrainSurfaceFlattenerPickEnabled()`	Returns the pick enabled state of the brainsurfaceFlattener.
`boolean`	`isGeodesicEnable()`	Check whether the Geodesic drawing is enabled or not.
`void`	`itemStateChanged(java.awt.event.ItemEvent event)`	Sets the flags for the getOptionses and resets labels.
`void`	`mouseClicked(java.awt.event.MouseEvent e)`	Handle the double mouse click event when the use swith between the dual image panel view.
`void`	`mouseEntered(java.awt.event.MouseEvent e)`	Methods do nothing, implemented mouseListener.
`void`	`mouseExited(java.awt.event.MouseEvent e)`	Methods do nothing, implemented mouseListener.
`void`	`mousePressed(java.awt.event.MouseEvent e)`	Methods do nothing, implemented mouseListener.
`void`	`mouseReleased(java.awt.event.MouseEvent e)`	Methods do nothing, implemented mouseListener.
`void`	`removeBranch(javax.media.j3d.BranchGroup kBranch, boolean bRemoveMesh)`	Updates the surRender -- removes a BranchGroup to the main Display.
`void`	`removeControls()`	Required by the parent super class, do nothing.
`void`	`removeProbeLine()`	Remove the red line showing where the probe will pass through.
`void`	`resetAxisX()`	Reset image volume orieint along X axis.
`void`	`resetAxisY()`	Reset image volume orieint along Y axis.
`void`	`resetImage()`	Reset image volume orieint along Z axis.
`private void`	`resetLUTMinMax(ModelImage image, ModelLUT lut)`	Calculate the LUT from the resampled image.
`private void`	`resizePanel()`	Method that resizes the frame and adjusts the rows, columns as needed.
`private void`	`set3DModelPosition(WildMagic.LibFoundation.Mathematics.Vector3f kPosition)`	Sets the 3DModel position label.
`void`	`setActiveImage(int active)`	Required by the parent super class, do nothing.
`void`	`setAlphaBlend(int value)`	Required by the parent super class, do nothing.
`void`	`setControls()`	Required by the parent super class, do nothing.
`void`	`setEnabled(boolean flag)`	Do nothing methods, just extend the ViewJframeBase.
`void`	`setFlythruColor(java.awt.Color _color)`	Set the flythru surface color.
`void`	`setImageB(ModelImage _imageB)`	Required by the parent super class, do nothing.
`void`	`setImageOriginal(ModelImage img)`	Set the reference to the original image we passed into the renderer from MIPAV (non-cloned).
`void`	`setLUTa(ModelLUT LUT)`	Accessor that sets the LUT.
`void`	`setLUTb(ModelLUT LUT)`	Accessor that sets the LUT.
`void`	`setMaterialShininess(float value)`	Set material ( texture or voxels ) shininess value.
`void`	`setPaintBitmapSwitch(boolean paintBitmapSwitch)`	Required by the parent super class, do nothing.
`void`	`setPathPosition(javax.vecmath.Point3f kPosition, javax.vecmath.Point3f kScaledPosition)`	Called when the view position changes in the FlyThruRenderer, updates the position representation in the Slice views:
`private void`	`setPatientSlicePosition(WildMagic.LibFoundation.Mathematics.Vector3f position)`	Sets the PatientSlice position label.
`void`	`setPositionLabels(WildMagic.LibFoundation.Mathematics.Vector3f position)`	Sets the position labels.
`void`	`setRenderPerspective(boolean bEnable)`
`private void`	`setRFAToolbarVisible(boolean flag)`	Set the RFA button visible or not.
`void`	`setRGBTA(ModelRGB RGBT)`	Sets the RGB table for ARGB image A.
`void`	`setRGBTB(ModelRGB RGBT)`	Sets the RGB table for image B.
`void`	`setRightPanelCanvas()`	Update the right panel when finish loading Endoscopy images.
`void`	`setSegmentationImage(ModelImage img)`	Set the image which we can check to see if the probe is hitting anything important (such as vessels, etc).
`void`	`setSlice(int slice)`	Required by the parent super class, do nothing.
`void`	`setSliceFromPlane(WildMagic.LibFoundation.Mathematics.Vector3f kCenter)`	Sets the position of the slices in the SurfaceRender and PlaneRender objects.
`void`	`setSliceFromSurface(WildMagic.LibFoundation.Mathematics.Vector3f center)`	Sets the position of the slices in the PlaneRender.
`void`	`setSliceHairColor(int iView, java.awt.Color color)`	Sets the color for the PlaneRender iView (AXIAL, SAGITTAL, CORONAL) slice.
`void`	`setTimeSlice(int slice)`	Required by the parent super class, do nothing.
`void`	`setTitle()`	Set the title of the frame with the image name of slice location.
`void`	`stateChanged(javax.swing.event.ChangeEvent event)`	Switch between slices control button and surface render button of the surface toolbar.
`void`	`switchTabList(java.lang.String command)`	Update the tabbed pane when switch view buttons in the View toolbar.
`boolean`	`updateImageExtents()`	Update image extends from the ModelImage.
`boolean`	`updateImages()`	Update images in surface render, raycast render and shearwarp render.
`boolean`	`updateImages(boolean forceShow)`	This methods calls corresponding render to update images without LUT changes.
`boolean`	`updateImages(ModelLUT LUTa, ModelLUT LUTb, boolean forceShow, int interpMode)`	This methods calls corresponding render to update images with LUT changes.
`void`	`updateProbePos()`	The navigation mode update the probe position in 3D texture volume.
`void`	`updateSliceData()`	Causes the PlaneRender objects to update the texture maps when the underlying ModelImage changes.
`void`	`updateSurRenderWinlevel(boolean flag)`	Hack.
`void`	`volumeRepaint()`	Repaint the volume.
`void`	`windowClosing(java.awt.event.WindowEvent event)`	Closes window and disposes of frame and component.

Methods inherited from class gov.nih.mipav.view.ViewJFrameBase
about, canCloseImageBAfterLoad, close, close, closeImageB, componentHidden, componentMoved, componentShown, getAlphaBlend, getDefaultLUTa, getDefaultLUTb, getDisplayMode, getImageNameA, getImageNameB, getLastState, getLUTa, getLUTb, getRGBTA, getRGBTB, getTriImg, getUserInterface, handleMaskPopupMenu, handlePaintToMaskPopupMenu, handleZoomPopupMenu, initExtents, initImageBuffer, initLUT, initNumSlices, initPixelBuffer, initResFactor, initResolutions, initRGB, initSlicePositions, initUnits, initZoom, loadAllVOIs, loadAllVOIsFrom, loadImage, loadLUT, loadLUTandTransferFunctionFrom, loadLUTandTransferFunctionFrom, makeString, newFrameBeenCreated, openVOI, openVOI, pickImageFile, save, save, save, saveAllVOIs, saveAllVOIsTo, saveLabels, saveLUT, saveLUTandTransferFunction, saveLUTandTransferFunction, saveLUTAs, saveLUTAs, saveVOI, saveVOIAs, saveVOIAs, saveVOIIntensities, saveVOIIntensitiesTo, setAbsPositionLabels, setEnableCloseImageBAfterLoad, setImageA, setLastState, setLinkedFrame, setLinkedTriFrame, setLUTs, setMessageText, setOpacityInfo, setpaintBitmap, setScannerPosition, windowActivated, windowClosed, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class javax.swing.JFrame
addImpl, createRootPane, frameInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setIconImage, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update

Methods inherited from class java.awt.Frame
addNotify, getCursorType, getExtendedState, getFrames, getIconImage, getMaximizedBounds, getMenuBar, getState, getTitle, isResizable, isUndecorated, remove, removeNotify, setBackground, setCursor, setExtendedState, setMaximizedBounds, setMenuBar, setOpacity, setResizable, setShape, setState, setTitle, setUndecorated

Methods inherited from class java.awt.Window
addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, hide, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, setVisible, show, toBack, toFront

Methods inherited from class java.awt.Container
add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component
action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setMixingCutoutShape, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object
clone, equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.awt.MenuContainer
getFont, postEvent

- Field Detail
  - serialVersionUID
```
private static final long serialVersionUID
```
    Use serialVersionUID for interoperability.
    
    See Also:
    
    Constant Field Values
  - NONE
```
public static final int NONE
```
    Render mode values.
    
    See Also:
    
    Constant Field Values
  - RAYCAST
```
public static final int RAYCAST
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - SHEARWARP
```
public static final int SHEARWARP
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - SURFACE
```
public static final int SURFACE
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - DUALPANEL
```
public static final int DUALPANEL
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - ENDOSCOPY
```
public static final int ENDOSCOPY
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - BRAINSURFACE_FLATTENER
```
public static final int BRAINSURFACE_FLATTENER
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - SURFACEVIEW
```
public static final int SURFACEVIEW
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - rendererProgressBar
```
protected static javax.swing.JProgressBar rendererProgressBar
```
    The small bar on the top right corner the volume view frame.
  - config
```
protected java.awt.GraphicsConfiguration config
```
    Configuration param, which will pass down to each render's constructor.
  - isoImageA
```
protected ModelImage isoImageA
```
    Isotropic version image A, B, used by the shear warp renderer.
  - isoImageB
```
protected ModelImage isoImageB
```
    Isotropic version image A, B, used by the shear warp renderer.
  - menuObj
```
protected ViewMenuBuilder menuObj
```
    Menu items storage.
  - modelViewLabel
```
protected javax.swing.JLabel modelViewLabel
```
    Labels for the current position in 3D ModelView coordinates:.
  - modelViewLabelVals
```
protected javax.swing.JLabel[] modelViewLabelVals
```
    DOCUMENT ME!
  - orient
```
protected int[] orient
```
    Orientations of the three axes.
  - panelToolbar
```
protected javax.swing.JPanel panelToolbar
```
    Panel that holds the toolbars.
  - patientSliceLabel
```
protected javax.swing.JLabel patientSliceLabel
```
    Labels for the current position in PatientSlice coordinates:.
  - patientSliceLabelVals
```
protected javax.swing.JLabel[] patientSliceLabelVals
```
    DOCUMENT ME!
  - RGBTA
```
protected ModelRGB RGBTA
```
    Lookup table of the color imageA, B.
  - RGBTB
```
protected ModelRGB RGBTB
```
    Lookup table of the color imageA, B.
  - serif12
```
protected java.awt.Font serif12
```
    Fonts, same as MipavUtil.font12 and MipavUtil.font12B.
  - serif12B
```
protected java.awt.Font serif12B
```
    Fonts, same as MipavUtil.font12 and MipavUtil.font12B.
  - panelLabels
```
javax.swing.JPanel panelLabels
```
    Panel containing the position labels:.
  - axialOrientation
```
private boolean axialOrientation
```
    Indicates that image orientation is unknown type or not.
  - brainsurfaceFlattenerRender
```
private MjCorticalAnalysis brainsurfaceFlattenerRender
```
    Rendering the brainsurfaceFlattener objects.
  - cameraPanel
```
private javax.swing.JPanel cameraPanel
```
    DOCUMENT ME!
  - clipBox
```
private javax.swing.JPanel clipBox
```
    DOCUMENT ME!
  - clipButton
```
private javax.swing.JButton clipButton
```
    Button to invoke all the six clipping planes.
  - clipDisableButton
```
private javax.swing.JButton clipDisableButton
```
    Button to disable all the six clipping planes.
  - clipMaskButton
```
private javax.swing.JButton clipMaskButton
```
    Button to crop the clip volume.
  - clipMaskUndoButton
```
private javax.swing.JButton clipMaskUndoButton
```
    Button to undo crop the clip volume.
  - clipPanel
```
private javax.swing.JPanel clipPanel
```
    DOCUMENT ME!
  - clipPlaneButton
```
private javax.swing.JButton clipPlaneButton
```
    Button to invoke clipping planes.
  - clipSaveButton
```
private javax.swing.JButton clipSaveButton
```
    Button to save clipped region.
  - displayPanel
```
private javax.swing.JPanel displayPanel
```
    DOCUMENT ME!
  - dualImagePane
```
private javax.swing.JSplitPane dualImagePane
```
    dual image pane that holds the left and right panel.
  - dualImagePanel
```
private javax.swing.JPanel dualImagePanel
```
    The image panel to hold two Canvas3D.
  - dualLeftPanel
```
private javax.swing.JPanel dualLeftPanel
```
    Left panel of the dual panel view.
  - dualRightPanel
```
private javax.swing.JPanel dualRightPanel
```
    Right panel of the dual panel view.
  - firstTimeVolView
```
private boolean firstTimeVolView
```
    Keep track of whether we're switching to the volume renderer for the first time.
  - flythruControl
```
private JPanelVirtualEndoscopySetup flythruControl
```
    Fly through setup control panel.
  - flythruMoveControl
```
private JPanelFlythruMove flythruMoveControl
```
    Fly through movement control panel.
  - flythruMovePanel
```
private javax.swing.JPanel flythruMovePanel
```
    View panel contains the fly thru control panel.
  - flythruOptions
```
private FlythruRender.SetupOptions flythruOptions
```
    Fly through options.
  - flythruPanel
```
private javax.swing.JPanel flythruPanel
```
    Fly through panel.
  - flythruRender
```
private FlythruRender flythruRender
```
    Reference to fly through renderer.
  - flythruSurfaceButton
```
private javax.swing.JButton flythruSurfaceButton
```
    Surface load button.
  - flythruTabVector
```
private java.util.Vector flythruTabVector
```
    DOCUMENT ME!
  - flyThruToolbar
```
private javax.swing.JToolBar flyThruToolbar
```
    Flythru toolbar.
  - histoLUTPanel
```
private javax.swing.JPanel histoLUTPanel
```
    Control panel for the surface renderer.
  - imageAOriginal
```
private ModelImage imageAOriginal
```
    Reference to the imageA original copy.
  - imageOrientation
```
private int imageOrientation
```
    Image orientation: coronal, sagittal, axial, unknown.
  - imagePanel
```
private javax.swing.JPanel imagePanel
```
    The image panel to hold one Canvas3D.
  - intensityDialog
```
private JDialogIntensityPaint intensityDialog
```
    DOCUMENT ME!
  - isBrainsurfaceFlattenerEnable
```
private boolean isBrainsurfaceFlattenerEnable
```
    Indicate if the brainsurface flattener render is enabled from the resample dialog or not.
  - isEndoscopyEnable
```
private boolean isEndoscopyEnable
```
    Indicate if the fly through render is enabled from the resample dialog or not.
  - isRayCastEnable
```
private boolean isRayCastEnable
```
    Indicate if the raycast render is enabled from the resample dialog or not.
  - isShearWarpEnable
```
private boolean isShearWarpEnable
```
    Indicate if the shear warp render is enabled from the resample dialog or not.
  - isSurfaceRenderEnable
```
private boolean isSurfaceRenderEnable
```
    Indicate if the surface render is enabled from the resample dialog or not.
  - isSurfaceViewEnable
```
private boolean isSurfaceViewEnable
```
    Indicate if the surface view is enabled from the resample dialog or not.
  - leftPanelRenderMode
```
private int leftPanelRenderMode
```
    The left panel renderer mode.
  - lightPanel
```
private javax.swing.JPanel lightPanel
```
    DOCUMENT ME!
  - m_akPlaneRender
```
private PlaneRender[] m_akPlaneRender
```
    The three slice views displayed as texture-mapped polygons:.
  - m_kBrainsurfaceFlattenerPanel
```
private javax.swing.JPanel m_kBrainsurfaceFlattenerPanel
```
    Control panels for the Brainsurface Flattener:.
  - m_kGeodesicPanel
```
private javax.swing.JPanel m_kGeodesicPanel
```
    Control panel for drawing geodesic curves.
  - m_kSculptPanel
```
private javax.swing.JPanel m_kSculptPanel
```
    Control panel for volume sculpting.
  - maxPanelWidth
```
private int maxPanelWidth
```
    The max width of the control panels.
  - menuBar
```
private javax.swing.JMenuBar menuBar
```
    Menu bar.
  - mousePanel
```
private javax.swing.JPanel mousePanel
```
    DOCUMENT ME!
  - opacityDialog
```
private JDialogOpacityControls opacityDialog
```
    DOCUMENT ME!
  - opacityPanel
```
private javax.swing.JPanel opacityPanel
```
    DOCUMENT ME!
  - paddingImageA
```
private ModelImage paddingImageA
```
    Padding imageA with blank images feeding.
  - paddingImageB
```
private ModelImage paddingImageB
```
    Padding imageB with blank images feeding.
  - paintGrowDialog
```
private JDialogPaintGrow paintGrowDialog
```
    Control panels of the triplanar view.
  - panelHistogram
```
private JFrameHistogram panelHistogram
```
    LUT control panel of the gray scale image.
  - parallelButton
```
private javax.swing.JToggleButton parallelButton
```
    Rendering parallel rotation button.
  - probePanel
```
private javax.swing.JPanel probePanel
```
    DOCUMENT ME!
  - radioCOMPOSITE
```
private javax.swing.JRadioButton radioCOMPOSITE
```
    Radio button of the COMPOSITE mode option.
  - radioCOMPOSITEShear
```
private javax.swing.JRadioButton radioCOMPOSITEShear
```
    Radio button of the COMPOSITE mode option.
  - radioMIP
```
private javax.swing.JRadioButton radioMIP
```
    Radio button of the MIP mode option.
  - radioMIPShear
```
private javax.swing.JRadioButton radioMIPShear
```
    Radio button of the MIP mode option.
  - radioSURFACE
```
private javax.swing.JRadioButton radioSURFACE
```
    Radio button of the SURFACE mode option.
  - radioSURFACEFAST
```
private javax.swing.JRadioButton radioSURFACEFAST
```
    Radio button of the SURFACE mode option.
  - radioSURFACEShear
```
private javax.swing.JRadioButton radioSURFACEShear
```
    Radio button of the SURFACE mode option.
  - radioSurrenderCOMPOSITE
```
private javax.swing.JRadioButton radioSurrenderCOMPOSITE
```
    Radio button of the surface render composite mode.
  - radioSurrenderLIGHT
```
private javax.swing.JRadioButton radioSurrenderLIGHT
```
    Radio button of the surface render lighting mode.
  - radioXRAY
```
private javax.swing.JRadioButton radioXRAY
```
    Radio button of the XRAY mode option.
  - radioXRAYShear
```
private javax.swing.JRadioButton radioXRAYShear
```
    Radio button of the XRAY mode option.
  - raisedbevel
```
private javax.swing.border.Border raisedbevel
```
    Panel Border view.
  - loweredbevel
```
private javax.swing.border.Border loweredbevel
```
    Panel Border view.
  - compound
```
private javax.swing.border.Border compound
```
    Panel Border view.
  - redBorder
```
private javax.swing.border.Border redBorder
```
    Panel Border view.
  - etchedBorder
```
private javax.swing.border.Border etchedBorder
```
    Panel Border view.
  - pressedBorder
```
private javax.swing.border.Border pressedBorder
```
    Panel Border view.
  - raycastCameraPanel
```
private javax.swing.JPanel raycastCameraPanel
```
    DOCUMENT ME!
  - raycastOptionsPanel
```
private javax.swing.JPanel raycastOptionsPanel
```
    Control panels for the raycast render.
  - raycastRender
```
private VolumeRendererRayCast raycastRender
```
    DOCUMENT ME!
  - raycastTabVector
```
private java.util.Vector raycastTabVector
```
    DOCUMENT ME!
  - rayCastToolBar
```
private javax.swing.JToolBar rayCastToolBar
```
    Raycast toolbar.
  - resampleDialog
```
private JDialogVolViewResample resampleDialog
```
    Reference to resample dialog, use to null out the resample dialog in this frame.
  - rfaButton
```
private javax.swing.JButton rfaButton
```
    Button for RFA.
  - rfaSeparator
```
private javax.swing.JButton rfaSeparator
```
    RFA separator.
  - rightPane
```
private javax.swing.JSplitPane rightPane
```
    The view pane that contains the image view and tri-planar view panels.
  - rightPanelRenderMode
```
private int rightPanelRenderMode
```
    The right panel renderer mode.
  - screenWidth
```
private int screenWidth
```
    Screen width, screen height.
  - screenHeight
```
private int screenHeight
```
    Screen width, screen height.
  - sculptHeight
```
private int sculptHeight
```
    Sculpt region height.
  - sculptWidth
```
private int sculptWidth
```
    Sculpt region width.
  - shearwarpCameraPanel
```
private javax.swing.JPanel shearwarpCameraPanel
```
    DOCUMENT ME!
  - shearwarpOptionsPanel
```
private javax.swing.JPanel shearwarpOptionsPanel
```
    Control panels for the shearwarp render.
  - shearwarpRender
```
private VolumeRendererShearWarp shearwarpRender
```
    DOCUMENT ME!
  - shearwarpTabVector
```
private java.util.Vector shearwarpTabVector
```
    DOCUMENT ME!
  - shearWarpToolBar
```
private javax.swing.JToolBar shearWarpToolBar
```
    Shearwarp toolbar.
  - slicePanel
```
private javax.swing.JPanel slicePanel
```
    DOCUMENT ME!
  - storeTabbedPaneIndex
```
private int storeTabbedPaneIndex
```
    Previoius tab index recorder.
  - surfacePanel
```
private javax.swing.JPanel surfacePanel
```
    DOCUMENT ME!
  - surRender
```
private SurfaceRender surRender
```
    Three types of renderer.
  - surView
```
private SurfaceView surView
```
    Surface View reference
  - surTabVector
```
private java.util.Vector surTabVector
```
    For each render, use the vector to store the currently active tabs.
  - toolbarBuilder
```
private ViewToolBarBuilder toolbarBuilder
```
    Toolbar builder reference.
  - triImagePanel
```
private javax.swing.JPanel triImagePanel
```
    Tri image planar render panels.
  - unparallelButton
```
private javax.swing.JToggleButton unparallelButton
```
    Rendering unparallel rotaion button.
  - viewPanel
```
private javax.swing.JPanel viewPanel
```
    DOCUMENT ME!
  - viewToolBar
```
private javax.swing.JToolBar viewToolBar
```
    The top one render view switch toolbar.
  - volToolBar
```
private javax.swing.JToolBar volToolBar
```
    Surface Render toolbar.
- Constructor Detail
  - ViewJFrameVolumeView
```
public ViewJFrameVolumeView(ModelImage _imageA,
                            ModelLUT LUTa,
                            ModelRGB _RGBTA,
                            ModelImage _imageB,
                            ModelLUT LUTb,
                            ModelRGB _RGBTB,
                            int _leftPanelRenderMode,
                            int _rightPanelRenderMode,
                            JDialogVolViewResample _resampleDialog)
```
    Make a volume rendering frame, which contains the toolbars on the top, control panel on the left, the volume rendering panel on the right, and the three orthogonal view ( axial, sagittal, coronal, views) on the bottom right.
    
    Parameters:
    
    _imageA - First image to display
    
    LUTa - LUT of the imageA (if null grayscale LUT is constructed)
    
    _RGBTA - RGB table of imageA
    
    _imageB - Second loaded image
    
    LUTb - LUT of the imageB
    
    _RGBTB - RGB table of imageB
    
    _leftPanelRenderMode - shear warp render mode enabled or not
    
    _rightPanelRenderMode - volume rendering panel render mode ( Raycast, shearwarp, etc).
    
    _resampleDialog - resample dialog reference.
- Method Detail
  - getRendererProgressBar
```
public static final javax.swing.JProgressBar getRendererProgressBar()
```
    Retrieve the progress bar used in the volume renderer (the one in the upper right hand corner).
    
    Returns:
    
    the volume renderer progress bar
  - actionPerformed
```
public void actionPerformed(java.awt.event.ActionEvent event)
```
    Calls various methods depending on the action.
    
    Specified by:
    
    actionPerformed in interface java.awt.event.ActionListener
    
    Specified by:
    
    actionPerformed in class ViewJFrameBase
    
    Parameters:
    
    event - Event that triggers function.
  - addAttachedSurfaces
```
public void addAttachedSurfaces()
```
    Add any attached surfaces the current image has in its file info (if the file info is in the xml format).
  - addBranch
```
public void addBranch(javax.media.j3d.BranchGroup kBranch,
                      ModelTriangleMesh kMesh,
                      javax.vecmath.Point3f kCenter)
```
    Updates the surRender -- adds a BranchGroup to the main Display.
    
    Parameters:
    
    kBranch - BranchGroup branch group
    
    kMesh - ModelTriangleMesh surface mesh
    
    kCenter - Point3f center of mass
  - addFlightPath
```
public void addFlightPath()
```
    Updates the surRender to display the flythru flight path from the flythruRender.
  - addSurface
```
public void addSurface(java.lang.String dir,
                       java.io.File file)
```
    Adding surface to the 3D texuture volume.
    
    Parameters:
    
    dir - surface file direcotry
    
    file - surface file name
  - buildBrainsurfaceFlattener
```
public void buildBrainsurfaceFlattener()
```
    Build the Brainsurface Flattener panel:
  - buildCameraPanel
```
public void buildCameraPanel()
```
    Build the camera control panel for the surface render.
  - buildClipPanel
```
public void buildClipPanel()
```
    Build the clipping control panel for the surface render.
  - buildDisplayPanel
```
public void buildDisplayPanel()
```
    Build the display control panel for the surface render.
  - buildFlythruMovePanel
```
public void buildFlythruMovePanel()
```
    Build the flythru move control panel.
  - buildFlythruPanel
```
public void buildFlythruPanel()
```
    Build the flythru control panel.
  - buildGeodesic
```
public void buildGeodesic()
```
    Build the Geodesic control panel.
  - buildHistoLUTPanel
```
public void buildHistoLUTPanel()
```
    The histogram control panel of the lookup table.
  - buildLabelPanel
```
public void buildLabelPanel()
```
    The label panel of the x, y, z slider position.
    
    Overrides:
    
    buildLabelPanel in class ViewJFrameBase
  - buildLightPanel
```
public void buildLightPanel()
```
    Build the light control panel for the surface render.
  - buildMousePanel
```
public void buildMousePanel()
```
    Build the mouse control panel for the raycast render.
  - buildOpacityPanel
```
public void buildOpacityPanel()
```
    Build the volume opacity control panel for the surface render.
  - buildProbePanel
```
public void buildProbePanel()
```
    Build the adding surface control panel for the surface render.
  - buildRayCastCameraPanel
```
public void buildRayCastCameraPanel()
```
    Build the camera control panel for the raycast render.
  - buildRayCastOptions
```
public void buildRayCastOptions()
```
    Build the view control panel for the raycast render.
  - buildSculpt
```
public void buildSculpt()
```
    Build the Sculpturing control panel.
  - buildShearWarpCameraPanel
```
public void buildShearWarpCameraPanel()
```
    Build the camera control panel for the shearwarp render.
  - buildShearWarpOptions
```
public void buildShearWarpOptions()
```
    Build the view control panel for the shearwarp render.
  - buildSlicePanel
```
public void buildSlicePanel()
```
    Build the slices control panel for the surface render.
  - buildSurfacePanel
```
public void buildSurfacePanel()
```
    Build the adding surface control panel for the surface render.
  - buildViewPanel
```
public void buildViewPanel()
```
    Build the view control panel for the surface render.
  - calcShearWarpImage
```
public void calcShearWarpImage(ModelImage _imageA,
                               ModelImage _imageB)
```
    Transform the image into shear warp image, which has the same resolution.
    
    Parameters:
    
    _imageA - the reference to image A.
    
    _imageB - the reference to image B.
  - componentResized
```
public void componentResized(java.awt.event.ComponentEvent event)
```
    Method called when a component resize event is generated. This method snaps the size of the frame and pagePanel to the nearest row, column sizing (so the gridRow and gridColumn and page layout may change).
    
    Specified by:
    
    componentResized in interface java.awt.event.ComponentListener
    
    Overrides:
    
    componentResized in class ViewJFrameBase
    
    Parameters:
    
    event - frame resize event
  - constructRenderers
```
public void constructRenderers()
```
    Construct the volume rendering methods based on the choices made from the resample dialog. This method is called by the Resample dialog.
  - disableTargetPointPicking
```
public void disableTargetPointPicking()
```
    Disable target point for the RFA probe from within the plane renderer.
  - disposeLocal
```
public void disposeLocal(boolean flag)
```
    Dispose memory.
    
    Parameters:
    
    flag - call super dispose or not
  - doPadding
```
public void doPadding(int[] extents,
                      int[] volExtents)
```
    Insert the blank images to the end of image. Padding the image to power of 2.
    
    Parameters:
    
    extents - int[] original extents
    
    volExtents - int[] padding to power of 2 extents.
  - doResample
```
public void doResample(int[] volExtents,
                       float[] newRes,
                       boolean forceResample,
                       int nDim,
                       int iFilterType)
```
    Resample the images to power of 2.
    
    Parameters:
    
    volExtents - resampled volume extents
    
    newRes - new resampled resolution
    
    forceResample - resampled or not
    
    nDim - number of dimensions
    
    iFilterType - type of sample filter, may be one of 7 different filters: TriLinear Interpolation, NearestNeighbor, CubicBSpline, QuadraticBSpline, CubicLagragian, QuinticLagragian, HepticLagragian, or WindowedSinc (see AlgorithmTransform.java).
  - drawBrainSurfaceFlattenerPoint
```
public void drawBrainSurfaceFlattenerPoint(javax.vecmath.Point3f kStart,
                                           int[] aiIndex,
                                           int iWhich)
```
    Draws the point selected on the Mesh for the brainsurfaceFlattener.
    
    Parameters:
    
    kStart - Ruida please add comment
    
    aiIndex - Ruida please add comment
    
    iWhich - Ruida please add comment
  - drawRFAPoint
```
public void drawRFAPoint(javax.vecmath.Point3f kPoint)
```
    Called from the PlaneRender class when a new Probe Entry Point has been selected. The point is passed into each PlaneRender class for display, and to the SurfaceRender class for display
    
    Parameters:
    
    kPoint - target point position
  - enableTargetPointPicking
```
public void enableTargetPointPicking()
```
    Enable target point for the RFA probe from within the plane renderer.
  - getBlendValue
```
public int getBlendValue()
```
    Get the imageA and imageB blending value from the PlaneRender.
    
    Returns:
    
    blendValue blender slider value.
  - getControls
```
public ViewControlsImage getControls()
```
    Required by the parent super class, do nothing.
    
    Specified by:
    
    getControls in class ViewJFrameBase
    
    Returns:
    
    null
  - getHistoLUTActiveImage
```
public ModelImage getHistoLUTActiveImage()
```
    Returns which image is active in the HistoLUT -- either imageA or imageB. Called by the PlaneRenderer object to determine which LUT to update based on dragging the right-mouse in the PlaneRender window:
    
    Returns:
    
    ModelImage, either imageA or imageB, depending on which is selected in the HistoLUT
  - getHistoRGBActiveImage
```
public ModelImage getHistoRGBActiveImage()
```
    Returns which image is active in the HistoRGB -- either imageA or imageB. Called by the PlaneRenderer object to determine which LUT to update based on dragging the right-mouse in the PlaneRender window:
    
    Returns:
    
    ModelImage, either imageA or imageB, depending on which is selected in the HistoLUT
  - getImageA
```
public ModelImage getImageA()
```
    Get the image A reference.
    
    Specified by:
    
    getImageA in class ViewJFrameBase
    
    Returns:
    
    imageA model image A reference.
  - getImageB
```
public ModelImage getImageB()
```
    Get the imageB reference.
    
    Specified by:
    
    getImageB in class ViewJFrameBase
    
    Returns:
    
    imageB model image B reference.
  - getImageOriginal
```
public ModelImage getImageOriginal()
```
    Get a reference to the original image we passed into the renderer from MIPAV (non-cloned).
    
    Returns:
    
    the original image
  - getLUTDialog
```
public JPanelHistoLUT getLUTDialog()
```
    Deprecated.
    
    Get the LUT panel (only should be used with grayscale images).
    
    Returns:
    
    the histo LUT panel
  - getHistogramDialog
```
public JFrameHistogram getHistogramDialog()
```
  - getProbeDialog
```
public JPanelProbe getProbeDialog()
```
    Return the rfa probe panel.
    
    Returns:
    
    the rfa probe panel
  - getRGBDialog
```
public JPanelHistoRGB getRGBDialog()
```
    Deprecated.
    
    Get the RGB panel (only should be used with color images).
    
    Returns:
    
    the histo RGB panel
  - getSegmentationImage
```
public ModelImage getSegmentationImage()
```
    Return the segmentation region map image which contains info on where the vascualture, etc are located.
    
    Returns:
    
    (vessel, etc) segmentation image
  - getViewPanel
```
public javax.swing.JSplitPane getViewPanel()
```
    Return the image panel.
    
    Returns:
    
    JSplitPane
  - insertFlythruTab
```
public void insertFlythruTab(java.lang.String _name,
                             javax.swing.JPanel _panel)
```
    Insert tab into the flythru tab list ( flythru render ) for backup.
    
    Parameters:
    
    _name - flythru render control panel name
    
    _panel - flythru render control panel
  - insertRaycastTab
```
public void insertRaycastTab(java.lang.String _name,
                             javax.swing.JPanel _panel)
```
    Insert tab into the raycast tab list ( raycast render ) for backup.
    
    Parameters:
    
    _name - raycast render control panel name
    
    _panel - raycast render control panel
  - insertShearwarpTab
```
public void insertShearwarpTab(java.lang.String _name,
                               javax.swing.JPanel _panel)
```
    Insert tab into the shear warp tab list ( shear warp render ) for backup.
    
    Parameters:
    
    _name - shear warp render control panel name
    
    _panel - shear warp render control panel
  - insertSurfaceTab
```
public void insertSurfaceTab(java.lang.String _name,
                             javax.swing.JPanel _panel)
```
    Insert tab into the surface tab list ( SurfaceRender ) for backup.
    
    Parameters:
    
    _name - surface render control panel name
    
    _panel - surface render control panel
  - insertTab
```
public void insertTab(java.lang.String _name,
                      javax.swing.JPanel _panel)
```
    Insert the new tab into the current visible tab list.
    
    Parameters:
    
    _name - control panel name
    
    _panel - control panel
  - isBrainSurfaceFlattenerPickEnabled
```
public boolean isBrainSurfaceFlattenerPickEnabled()
```
    Returns the pick enabled state of the brainsurfaceFlattener.
    
    Returns:
    
    flag brain surface pickable or not.
  - isGeodesicEnable
```
public boolean isGeodesicEnable()
```
    Check whether the Geodesic drawing is enabled or not.
    
    Returns:
    
    boolean true Geodesic drawing enabled, false Geodesic disable.
  - itemStateChanged
```
public void itemStateChanged(java.awt.event.ItemEvent event)
```
    Sets the flags for the getOptionses and resets labels.
    
    Specified by:
    
    itemStateChanged in interface java.awt.event.ItemListener
    
    Parameters:
    
    event - Event that triggered this function.
  - mouseClicked
```
public void mouseClicked(java.awt.event.MouseEvent e)
```
    Handle the double mouse click event when the use swith between the dual image panel view.
    
    Specified by:
    
    mouseClicked in interface java.awt.event.MouseListener
    
    Parameters:
    
    e - MouseEvent
  - mouseEntered
```
public void mouseEntered(java.awt.event.MouseEvent e)
```
    Methods do nothing, implemented mouseListener.
    
    Specified by:
    
    mouseEntered in interface java.awt.event.MouseListener
    
    Parameters:
    
    e - MouseEvent
  - mouseExited
```
public void mouseExited(java.awt.event.MouseEvent e)
```
    Methods do nothing, implemented mouseListener.
    
    Specified by:
    
    mouseExited in interface java.awt.event.MouseListener
    
    Parameters:
    
    e - MouseEvent
  - mousePressed
```
public void mousePressed(java.awt.event.MouseEvent e)
```
    Methods do nothing, implemented mouseListener.
    
    Specified by:
    
    mousePressed in interface java.awt.event.MouseListener
    
    Parameters:
    
    e - MouseEvent
  - mouseReleased
```
public void mouseReleased(java.awt.event.MouseEvent e)
```
    Methods do nothing, implemented mouseListener.
    
    Specified by:
    
    mouseReleased in interface java.awt.event.MouseListener
    
    Parameters:
    
    e - MouseEvent
  - removeBranch
```
public void removeBranch(javax.media.j3d.BranchGroup kBranch,
                         boolean bRemoveMesh)
```
    Updates the surRender -- removes a BranchGroup to the main Display.
    
    Parameters:
    
    kBranch - BranchGroup surface branch group reference.
    
    bRemoveMesh - boolean flag to remove the surface mesh or not
  - removeControls
```
public void removeControls()
```
    Required by the parent super class, do nothing.
    
    Specified by:
    
    removeControls in class ViewJFrameBase
  - removeProbeLine
```
public void removeProbeLine()
```
    Remove the red line showing where the probe will pass through. Used when changing the probe target point through the tri-images.
  - resetAxisX
```
public void resetAxisX()
```
    Reset image volume orieint along X axis.
  - resetAxisY
```
public void resetAxisY()
```
    Reset image volume orieint along Y axis.
  - resetImage
```
public void resetImage()
```
    Reset image volume orieint along Z axis.
  - setActiveImage
```
public void setActiveImage(int active)
```
    Required by the parent super class, do nothing.
    
    Specified by:
    
    setActiveImage in class ViewJFrameBase
    
    Parameters:
    
    active - int
  - setAlphaBlend
```
public void setAlphaBlend(int value)
```
    Required by the parent super class, do nothing.
    
    Specified by:
    
    setAlphaBlend in class ViewJFrameBase
    
    Parameters:
    
    value - DOCUMENT ME!
  - setControls
```
public void setControls()
```
    Required by the parent super class, do nothing.
    
    Specified by:
    
    setControls in class ViewJFrameBase
  - setEnabled
```
public void setEnabled(boolean flag)
```
    Do nothing methods, just extend the ViewJframeBase.
    
    Specified by:
    
    setEnabled in class ViewJFrameBase
    
    Parameters:
    
    flag - DOCUMENT ME!
  - setFlythruColor
```
public void setFlythruColor(java.awt.Color _color)
```
    Set the flythru surface color.
    
    Parameters:
    
    _color - ModelLUT table
  - setImageB
```
public void setImageB(ModelImage _imageB)
```
    Required by the parent super class, do nothing.
    
    Specified by:
    
    setImageB in class ViewJFrameBase
    
    Parameters:
    
    _imageB - image to set the frame to
  - setImageOriginal
```
public void setImageOriginal(ModelImage img)
```
    Set the reference to the original image we passed into the renderer from MIPAV (non-cloned).
    
    Parameters:
    
    img - the original image
  - setLUTa
```
public void setLUTa(ModelLUT LUT)
```
    Accessor that sets the LUT.
    
    Overrides:
    
    setLUTa in class ViewJFrameBase
    
    Parameters:
    
    LUT - the LUT
  - setLUTb
```
public void setLUTb(ModelLUT LUT)
```
    Accessor that sets the LUT.
    
    Overrides:
    
    setLUTb in class ViewJFrameBase
    
    Parameters:
    
    LUT - the LUT
  - setMaterialShininess
```
public void setMaterialShininess(float value)
```
    Set material ( texture or voxels ) shininess value.
    
    Parameters:
    
    value - float
  - setPaintBitmapSwitch
```
public void setPaintBitmapSwitch(boolean paintBitmapSwitch)
```
    Required by the parent super class, do nothing.
    
    Specified by:
    
    setPaintBitmapSwitch in class ViewJFrameBase
    
    Parameters:
    
    paintBitmapSwitch - boolean
  - setPathPosition
```
public void setPathPosition(javax.vecmath.Point3f kPosition,
                            javax.vecmath.Point3f kScaledPosition)
```
    Called when the view position changes in the FlyThruRenderer, updates the position representation in the Slice views:
    
    Parameters:
    
    kPosition - center position.
    
    kScaledPosition - position of the flythru view point along the flythru path.
  - setPositionLabels
```
public void setPositionLabels(WildMagic.LibFoundation.Mathematics.Vector3f position)
```
    Sets the position labels.
    
    Parameters:
    
    position - the slice positions in FileCoordinates.
  - setRGBTA
```
public void setRGBTA(ModelRGB RGBT)
```
    Sets the RGB table for ARGB image A.
    
    Specified by:
    
    setRGBTA in class ViewJFrameBase
    
    Parameters:
    
    RGBT - RGB table
  - setRGBTB
```
public void setRGBTB(ModelRGB RGBT)
```
    Sets the RGB table for image B.
    
    Specified by:
    
    setRGBTB in class ViewJFrameBase
    
    Parameters:
    
    RGBT - RGB table
  - setRightPanelCanvas
```
public void setRightPanelCanvas()
```
    Update the right panel when finish loading Endoscopy images.
  - setSegmentationImage
```
public void setSegmentationImage(ModelImage img)
```
    Set the image which we can check to see if the probe is hitting anything important (such as vessels, etc).
    
    Parameters:
    
    img - segmentation image
  - setSlice
```
public void setSlice(int slice)
```
    Required by the parent super class, do nothing.
    
    Specified by:
    
    setSlice in interface ViewImageUpdateInterface
    
    Parameters:
    
    slice - int
  - setSliceFromPlane
```
public void setSliceFromPlane(WildMagic.LibFoundation.Mathematics.Vector3f kCenter)
```
    Sets the position of the slices in the SurfaceRender and PlaneRender objects. Called from the PlaneRender class.
    
    Parameters:
    
    center - the new slice positions in FileCoordinates
  - setSliceFromSurface
```
public void setSliceFromSurface(WildMagic.LibFoundation.Mathematics.Vector3f center)
```
    Sets the position of the slices in the PlaneRender. Called from the SurfaceRender class.
    
    Parameters:
    
    center - the new slice positions in FileCoordinates
  - setSliceHairColor
```
public void setSliceHairColor(int iView,
                              java.awt.Color color)
```
    Sets the color for the PlaneRender iView (AXIAL, SAGITTAL, CORONAL) slice.
    
    Parameters:
    
    iView - (AXIAL, SAGITTAL, CORONAL)
    
    color - the new axis color attribute.
  - setTimeSlice
```
public void setTimeSlice(int slice)
```
    Required by the parent super class, do nothing.
    
    Specified by:
    
    setTimeSlice in interface ViewImageUpdateInterface
    
    Parameters:
    
    slice - int
  - setTitle
```
public void setTitle()
```
    Set the title of the frame with the image name of slice location.
    
    Specified by:
    
    setTitle in class ViewJFrameBase
  - stateChanged
```
public void stateChanged(javax.swing.event.ChangeEvent event)
```
    Switch between slices control button and surface render button of the surface toolbar.
    
    Specified by:
    
    stateChanged in interface javax.swing.event.ChangeListener
    
    Overrides:
    
    stateChanged in class ViewJFrameBase
    
    Parameters:
    
    event - ChangeEvent
  - switchTabList
```
public void switchTabList(java.lang.String command)
```
    Update the tabbed pane when switch view buttons in the View toolbar.
    
    Parameters:
    
    command - command of the renderer's view toolbar button click.
  - updateImageExtents
```
public boolean updateImageExtents()
```
    Update image extends from the ModelImage. Now, disabled.
    
    Specified by:
    
    updateImageExtents in interface ViewImageUpdateInterface
    
    Specified by:
    
    updateImageExtents in class ViewJFrameBase
    
    Returns:
    
    DOCUMENT ME!
    
    See Also:
    
    ViewImageUpdateInterface
  - updateImages
```
public boolean updateImages()
```
    Update images in surface render, raycast render and shearwarp render.
    
    Specified by:
    
    updateImages in interface ViewImageUpdateInterface
    
    Returns:
    
    boolean boolean confirming successful update
  - updateImages
```
public boolean updateImages(boolean forceShow)
```
    This methods calls corresponding render to update images without LUT changes.
    
    Specified by:
    
    updateImages in interface ViewImageUpdateInterface
    
    Parameters:
    
    forceShow - forces show to reimport image and calc. java image
    
    Returns:
    
    boolean confirming successful update
  - updateImages
```
public boolean updateImages(ModelLUT LUTa,
                            ModelLUT LUTb,
                            boolean forceShow,
                            int interpMode)
```
    This methods calls corresponding render to update images with LUT changes.
    
    Specified by:
    
    updateImages in interface ViewImageUpdateInterface
    
    Parameters:
    
    LUTa - LUT used to update imageA
    
    LUTb - LUT used to update imageB
    
    forceShow - forces show to reimport image and calc. java image
    
    interpMode - image interpolation method (Nearest or Smooth)
    
    Returns:
    
    boolean confirming successful update
  - updateProbePos
```
public void updateProbePos()
```
    The navigation mode update the probe position in 3D texture volume. Not used now. Might be used later on.
  - updateSliceData
```
public void updateSliceData()
```
    Causes the PlaneRender objects to update the texture maps when the underlying ModelImage changes.
  - updateSurRenderWinlevel
```
public void updateSurRenderWinlevel(boolean flag)
```
    Hack. Update the the surface render win-level from the plane renderer.
    
    Parameters:
    
    flag - true update win-level, false not update.
  - volumeRepaint
```
public void volumeRepaint()
```
    Repaint the volume.
  - windowClosing
```
public void windowClosing(java.awt.event.WindowEvent event)
```
    Closes window and disposes of frame and component.
    
    Specified by:
    
    windowClosing in interface java.awt.event.WindowListener
    
    Overrides:
    
    windowClosing in class ViewJFrameBase
    
    Parameters:
    
    event - Event that triggered function
  - buildMenu
```
protected javax.swing.JMenuBar buildMenu()
```
    Builds menus for the tri-planar view.
    
    Returns:
    
    DOCUMENT ME!
  - buildToolbars
```
protected void buildToolbars()
```
    Builds the toolbars for the tri-planar view.
  - configureFrame
```
protected void configureFrame()
```
    Constructs main frame structures for image canvas.
  - finalize
```
protected void finalize()
                 throws java.lang.Throwable
```
    Cleans up memory from gc.
    
    Overrides:
    
    finalize in class ViewJFrameBase
    
    Throws:
    
    java.lang.Throwable - DOCUMENT ME!
  - addToolbar
```
private void addToolbar()
```
    Add surface volume renderer control buttons.
  - buildFlyThruToolbar
```
private void buildFlyThruToolbar()
```
    Build the fly through toolbar.
  - buildRayCastToolbar
```
private void buildRayCastToolbar()
```
    Build the raycast toolbar.
  - buildShearWarpToolbar
```
private void buildShearWarpToolbar()
```
    Build the shearwarp toolbar.
  - buildSurRenderToolbar
```
private void buildSurRenderToolbar()
```
    Build the surface render toolbar.
  - buildSurfaceViewToolbar
```
private void buildSurfaceViewToolbar()
```
    The the top one volume view toolbar.
  - buildViewToolbar
```
private void buildViewToolbar()
```
    The the top one volume view toolbar.
  - enableDualPanelRender
```
private void enableDualPanelRender()
```
    Enable dual panel renders.
  - enableFlyThruRender
```
private void enableFlyThruRender()
```
    Enable the fly through frame layout.
  - enableShearWarpRender
```
private void enableShearWarpRender()
```
    Enable the shear warp render.
  - enableSurfaceRender
```
private void enableSurfaceRender()
```
    Enable surface render.
  - enableVolumeRender
```
private void enableVolumeRender()
```
    Enable volume render.
  - resetLUTMinMax
```
private void resetLUTMinMax(ModelImage image,
                            ModelLUT lut)
```
    Calculate the LUT from the resampled image.
    
    Parameters:
    
    image - ModelImage reference
    
    lut - ModelLUT reference
  - resizePanel
```
private void resizePanel()
```
    Method that resizes the frame and adjusts the rows, columns as needed.
  - set3DModelPosition
```
private void set3DModelPosition(WildMagic.LibFoundation.Mathematics.Vector3f kPosition)
```
    Sets the 3DModel position label.
    
    Parameters:
    
    position - DOCUMENT ME!
  - setPatientSlicePosition
```
private void setPatientSlicePosition(WildMagic.LibFoundation.Mathematics.Vector3f position)
```
    Sets the PatientSlice position label.
    
    Parameters:
    
    position - DOCUMENT ME!
  - setRFAToolbarVisible
```
private void setRFAToolbarVisible(boolean flag)
```
    Set the RFA button visible or not.
    
    Parameters:
    
    flag - Set the RFA button visible or not
  - setRenderPerspective
```
public void setRenderPerspective(boolean bEnable)
```

Class ViewJFrameVolumeView

Nested Class Summary

Nested classes/interfaces inherited from class javax.swing.JFrame

Nested classes/interfaces inherited from class java.awt.Frame

Nested classes/interfaces inherited from class java.awt.Window

Nested classes/interfaces inherited from class java.awt.Container

Nested classes/interfaces inherited from class java.awt.Component

Field Summary

Fields inherited from class gov.nih.mipav.view.ViewJFrameBase

Fields inherited from class javax.swing.JFrame

Fields inherited from class java.awt.Frame

Fields inherited from class java.awt.Component

Fields inherited from interface java.awt.image.ImageObserver

Fields inherited from interface javax.swing.WindowConstants

Constructor Summary

Method Summary

Methods inherited from class gov.nih.mipav.view.ViewJFrameBase

Methods inherited from class javax.swing.JFrame

Methods inherited from class java.awt.Frame

Methods inherited from class java.awt.Window

Methods inherited from class java.awt.Container

Methods inherited from class java.awt.Component

Methods inherited from class java.lang.Object

Methods inherited from interface java.awt.MenuContainer

Field Detail

serialVersionUID

NONE

RAYCAST

SHEARWARP

SURFACE

DUALPANEL

ENDOSCOPY

BRAINSURFACE_FLATTENER

SURFACEVIEW

rendererProgressBar

config

isoImageA

isoImageB

menuObj

modelViewLabel

modelViewLabelVals

orient

panelToolbar

patientSliceLabel

patientSliceLabelVals

RGBTA

RGBTB

serif12

serif12B

panelLabels

axialOrientation

brainsurfaceFlattenerRender

cameraPanel

clipBox

clipButton

clipDisableButton

clipMaskButton

clipMaskUndoButton

clipPanel

clipPlaneButton

clipSaveButton

displayPanel

dualImagePane

dualImagePanel

dualLeftPanel

dualRightPanel

firstTimeVolView

flythruControl

flythruMoveControl

flythruMovePanel

flythruOptions

flythruPanel

flythruRender

flythruSurfaceButton

flythruTabVector

flyThruToolbar

histoLUTPanel

imageAOriginal

imageOrientation

imagePanel