Field Detail

• IMAGE_A

  public static final int IMAGE_A

  Deprecated.
  Display mode image A.

  See Also:

  Constant Field Values

• IMAGE_B

  public static final int IMAGE_B

  Deprecated.
  Display mode image B.

  See Also:

  Constant Field Values

• displayMode

  protected int displayMode

  Deprecated.
  Indicates which image is to be acted upon when two images are displayed.

• cursorIndex

  private int cursorIndex

  Deprecated.
  Active mouse cursor index of the imageA, B and GM image A, B.

• cursorIndexB

  private int cursorIndexB

  Deprecated.
  Active mouse cursor index of the imageA, B and GM image A, B.

• entireFlag

  private boolean entireFlag

  Deprecated.
  Flag indicating if histogram should be done on all of image or not.

• histogramA

  private ModelHistogram histogramA

  Deprecated.
  Model histogram A.

• histogramB

  private ModelHistogram histogramB

  Deprecated.
  Model histogram B.

• histoPanelA

  private ViewJPanelHistoLUT histoPanelA

  Deprecated.
  Panel containing the histogram and lut components for image A.

• histoPanelB

  private ViewJPanelHistoLUT histoPanelB

  Deprecated.
  Panel containing the histogram and lut components for image B.

• imageA

  private ModelImage imageA

  Deprecated.
  image A reference.

• imageB

  private ModelImage imageB

  Deprecated.
  image B reference.

• indexColorATextF

  private javax.swing.JTextField indexColorATextF

  Deprecated.
  Color LUT A, B textfield.

• indexColorBTextF

  private javax.swing.JTextField indexColorBTextF

  Deprecated.
  Color LUT A, B textfield.

• labelsTable

  private java.util.Hashtable<java.lang.Integer,​javax.swing.JLabel> labelsTable

  Deprecated.
  Histogram dialog slider labels of the imageA, B and GM imageA, B.

• labelsTableB

  private java.util.Hashtable<java.lang.Integer,​javax.swing.JLabel> labelsTableB

  Deprecated.
  Histogram dialog slider labels of the imageA, B and GM imageA, B.

• logCheckBoxA

  private javax.swing.JCheckBox logCheckBoxA

  Deprecated.
  The histogram log view Check box.

• logCheckBoxB

  private javax.swing.JCheckBox logCheckBoxB

  Deprecated.
  The histogram log view Check box.

• LUTa

  private ModelLUT LUTa

  Deprecated.
  Model LUT A.

• lutAdjustCheckboxA

  private javax.swing.JCheckBox lutAdjustCheckboxA

  Deprecated.
  LutA table adjust check box.

• lutAdjustCheckboxB

  private javax.swing.JCheckBox lutAdjustCheckboxB

  Deprecated.
  LutB table adjust check box.

• LUTb

  private ModelLUT LUTb

  Deprecated.
  Model LUT B.

• mainPanel

  private javax.swing.JPanel mainPanel

  Deprecated.
  The main GUI control panel.

• menuObj

  private ViewMenuBuilder menuObj

  Deprecated.
  Not used now.

• mouseLabel

  private javax.swing.JLabel mouseLabel

  Deprecated.
  The opacity slider label.

• mouseLabelB

  private javax.swing.JLabel mouseLabelB

  Deprecated.
  The opacity slider label.

• mouseSlider

  private javax.swing.JSlider mouseSlider

  Deprecated.
  Opacity X scale sliders.

• mouseSliderB

  private javax.swing.JSlider mouseSliderB

  Deprecated.
  Opacity X scale sliders.

• mouseSliderLabels

  private javax.swing.JLabel[] mouseSliderLabels

  Deprecated.
  The labels below the opacity slider.

• mouseSliderLabelsB

  private javax.swing.JLabel[] mouseSliderLabelsB

  Deprecated.
  The labels below the opacity slider.

• nColorsATextF

  private javax.swing.JTextField nColorsATextF

  Deprecated.
  Update check box. Updating the histogram and volume during mouse drag.

• nColorsBTextF

  private javax.swing.JTextField nColorsBTextF

  Deprecated.
  Update check box. Updating the histogram and volume during mouse drag.

• panelA

  private javax.swing.JPanel panelA

  Deprecated.
  Tabbed panel A.

• panelB

  private javax.swing.JPanel panelB

  Deprecated.
  Tabbed panel B.

• rangeText

  private javax.swing.JTextField rangeText

  Deprecated.
  X range text field in the imageA, B histogram dialog.

• rangeTextB

  private javax.swing.JTextField rangeTextB

  Deprecated.
  X range text field in the imageA, B histogram dialog.

• rangeX

  private float rangeX

  Deprecated.
  X range value of the imageA, B and GM imageA, B.

• rangeXB

  private float rangeXB

  Deprecated.
  X range value of the imageA, B and GM imageA, B.

• scaleRangeA

  private int scaleRangeA

  Deprecated.
  Scale range value according to the image min and max.

• scaleRangeB

  private int scaleRangeB

  Deprecated.
  Scale range value according to the image min and max.

• scroller

  private javax.swing.JScrollPane scroller

  Deprecated.
  Scroll pane.

• scrollPanel

  private JPanelHistoLUT.DrawingPanel scrollPanel

  Deprecated.
  Scroll panel that holding the all the control components.

• tabbedPane

  private javax.swing.JTabbedPane tabbedPane

  Deprecated.
  The main tabbed control panel.

• threshLowerF

  private javax.swing.JTextField threshLowerF

  Deprecated.
  threshold related.

• threshUpperF

  private javax.swing.JTextField threshUpperF

  Deprecated.
  threshold related.

• toolBarBottom

  private javax.swing.JToolBar toolBarBottom

  Deprecated.
  Bottom toolbar.

• toolBarObj

  private ViewToolBarBuilder toolBarObj

  Deprecated.
  Toolbar that hold the linear, horizontal mode control buttons.

• toolBarTop

  private javax.swing.JToolBar toolBarTop

  Deprecated.
  Top toolbar

• toolBarCenter

  private javax.swing.JToolBar toolBarCenter

  Deprecated.
  center toolbar

• topPanel

  private javax.swing.JPanel topPanel

  Deprecated.
  Toolbar panel.

• xRangeTextA

  private javax.swing.JTextField xRangeTextA

  Deprecated.
  X range text field in the imageA, B and GM image A, B histogram dialog. Following text fields are used by the tri-planar volume view.

• xRangeTextB

  private javax.swing.JTextField xRangeTextB

  Deprecated.
  X range text field in the imageA, B and GM image A, B histogram dialog. Following text fields are used by the tri-planar volume view.

• yRangeTextA

  private javax.swing.JTextField yRangeTextA

  Deprecated.
  Y range text field in the imageA, B and GM image A, B histogram dialog. Following text fields are used by the tri-planar volume view.

• yRangeTextB

  private javax.swing.JTextField yRangeTextB

  Deprecated.
  Y range text field in the imageA, B and GM image A, B histogram dialog. Following text fields are used by the tri-planar volume view.

• ctDialogA

  private JDialogCTHistoLUT ctDialogA

  Deprecated.
  Reference to CT dialog. The CT dialog only works with the componentHistogram.

• ctDialogB

  private JDialogCTHistoLUT ctDialogB

  Deprecated.
  Reference to CT dialog. The CT dialog only works with the componentHistogram.

• bImageUpdate

  private boolean bImageUpdate

  Deprecated.
  Update the LUT in real-time:

Constructor Detail

• JPanelHistoLUT

  public JPanelHistoLUT​(ModelImage _imageA,
                        ModelImage _imageB,
                        ModelLUT _LUTa,
                        ModelLUT _LUTb,
                        boolean _entireFlag)

  Deprecated.
  Makes a frame of the histogram and LUT.

  Parameters:

  _imageA - Model of imageA

  _imageB - Model of imageB

  _LUTa - Model of LUT for image A

  _LUTb - Model of LUT for image B

  _entireFlag - Flag indicating if histogram should be done on all of image.

• JPanelHistoLUT

  public JPanelHistoLUT​(ModelImage _imageA,
                        ModelImage _imageB,
                        ModelLUT _LUTa,
                        ModelLUT _LUTb,
                        boolean _entireFlag,
                        boolean bUpdateImage)

  Deprecated.
  Makes a frame of the histogram and LUT.

  Parameters:

  _imageA - Model of imageA

  _imageB - Model of imageB

  _LUTa - Model of LUT for image A

  _LUTb - Model of LUT for image B

  _entireFlag - Flag indicating if histogram should be done on all of image.

Method Detail

• actionPerformed

  public void actionPerformed​(java.awt.event.ActionEvent event)

  Deprecated.
  Calls various methods depending on the action.

  Specified by:

  actionPerformed in interface java.awt.event.ActionListener

  Parameters:

  event - event that triggered function

• disposeLocal

  public void disposeLocal()

  Deprecated.
  Still needs more work Matt.

• dragPoint

  public void dragPoint​(java.awt.event.MouseEvent mouseEvent)

  Deprecated.
  Placeholder.

  Specified by:

  dragPoint in interface HistoLUTParent

  Parameters:

  mouseEvent - drag event

• focusGained

  public void focusGained​(java.awt.event.FocusEvent e)

  Deprecated.
  Focus Events:

  Specified by:

  focusGained in interface java.awt.event.FocusListener

  Parameters:

  e - event handler.

• focusLost

  public void focusLost​(java.awt.event.FocusEvent e)

  Deprecated.
  If focus is lost from either threshold field (lower/upper), update the new value on the LUT.

  Specified by:

  focusLost in interface java.awt.event.FocusListener

  Parameters:

  e - FocusEvent

• getDisplayMode

  public int getDisplayMode()

  Deprecated.
  Get the LUT panel current display mode.

  Returns:

  int displayMode value, which is either IMAGE_A or IMAGE_B

• getHistoLUTComponentA

  public ViewJComponentHLUTBase getHistoLUTComponentA()

  Deprecated.
  Get the histogram component for imageA.

  Returns:

  the imageA histogram component

• getHistoLUTComponentB

  public ViewJComponentHLUTBase getHistoLUTComponentB()

  Deprecated.
  Get the histogram component for imageB.

  Returns:

  the imageB histogram component

• getImageA

  public ModelImage getImageA()

  Deprecated.
  Accessor that returns the imageA.

  Returns:

  image

• getImageB

  public ModelImage getImageB()

  Deprecated.
  Accessor that returns the imageB.

  Returns:

  imageB

• getLUT

  public ModelLUT getLUT()

  Deprecated.
  This method returns the current LUT.

  Returns:

  LUT for Image A if selected, otherwise for Image B

• getLUTa

  public final ModelLUT getLUTa()

  Deprecated.
  Get the imageA histo component lut.

  Returns:

  ModelLUT

• getLUTb

  public final ModelLUT getLUTb()

  Deprecated.
  Get the imageB histo component lut.

  Returns:

  ModelLUT

• getLUTComponentA

  public ViewJComponentLUT getLUTComponentA()

  Deprecated.
  Get the imageA LUT.

  Returns:

  the imageA LUT component

• getLUTComponentB

  public ViewJComponentLUT getLUTComponentB()

  Deprecated.
  Get the imageB LUT.

  Returns:

  the imageB LUT component

• getMainPanel

  public javax.swing.JPanel getMainPanel()

  Deprecated.
  Return the main control panel.

  Returns:

  mainPanel the main control panel

• getSelectedLUT

  public int getSelectedLUT()

  Deprecated.
  Returns which LUT is currently visible.

  Returns:

  return the currently selcted LUT table index.

• getTransferLine

  public TransferFunction getTransferLine()

  Deprecated.
  This method is used to obtain the VOIBase Single Transfer Line.

  Returns:

  LUTb.getTransferFunction() - VOIBase of Single Transfer Line for Image B

• isImageUpdate

  public boolean isImageUpdate()

  Deprecated.
  Indicates if real-time update of the image should take place.

  Specified by:

  isImageUpdate in interface HistoLUTParent

  Returns:

  true if real time update should take place

• itemStateChanged

  public void itemStateChanged​(java.awt.event.ItemEvent event)

  Deprecated.
  Sets the flags for the checkboxes.

  Specified by:

  itemStateChanged in interface java.awt.event.ItemListener

  Parameters:

  event - event that triggered this function

• keyPressed

  public void keyPressed​(java.awt.event.KeyEvent e)

  Deprecated.
  Unchanged.

  Specified by:

  keyPressed in interface java.awt.event.KeyListener

  Parameters:

  e - key press event handler.

• keyReleased

  public void keyReleased​(java.awt.event.KeyEvent e)

  Deprecated.
  Unchanged.

  Specified by:

  keyReleased in interface java.awt.event.KeyListener

  Parameters:

  e - kay release event handler.

• keyTyped

  public void keyTyped​(java.awt.event.KeyEvent e)

  Deprecated.
  If the ENTER key is hit while in threshold boxes, update the LUT's threshold (for dual threshold).

  Specified by:

  keyTyped in interface java.awt.event.KeyListener

  Parameters:

  e - KeyEvent

• loadLUTFrom

  public void loadLUTFrom​(boolean loadAll,
                          java.lang.String filename,
                          java.lang.String dirName,
                          boolean quietMode)

  Deprecated.
  This method loads the LUT for the active image. If the image is not a color image then both the functions and the LUT data are loaded. If this is a color image, then only the functions are loaded.

  Parameters:

  loadAll - loadAll boolean indicating that both lut and transfer functions should be loaded. If false, then only transfer functions are loaded.

  filename - filename filename to save LUT as

  dirName - dirName directory to save LUT to

  quietMode - quietMode if true indicates that warnings should not be displayed.

• loadLUTandTransferFunctionFrom

  public void loadLUTandTransferFunctionFrom​(boolean loadAll,
                                             java.lang.String filename,
                                             java.lang.String dirName,
                                             boolean quietMode)

  Deprecated.
  This method loads the LUT for the active image. If the image is not a color image then both the functions and the LUT data are loaded. If this is a color image, then only the functions are loaded.

  Parameters:

  loadAll - loadAll boolean indicating that both lut and transfer functions should be loaded. If false, then only transfer functions are loaded.

  filename - filename filename to save LUT as

  dirName - dirName directory to save LUT to

  quietMode - quietMode if true indicates that warnings should not be displayed.

• notifyOfUpdate

  public void notifyOfUpdate​(ModelLUT LUT,
                             int imageAorB)

  Deprecated.
  Enable button to indicate image has changed and the histogram should be recalculated.

  Parameters:

  LUT - new Lookup table

  imageAorB - indicates which histogram needs to be recalculated

• removeHistoLUTb

  public void removeHistoLUTb()

  Deprecated.
  Removes the tabbed pane for the histogram of image B.

• resizePanel

  public void resizePanel​(int panelWidth,
                          int frameHeight)

  Deprecated.
  Resizig the control panel with ViewJFrameVolumeView's frame width and height.

  Parameters:

  panelWidth - panel width.

  frameHeight - parent frame height.

• saveLUTAs

  public void saveLUTAs​(boolean saveAll,
                        java.lang.String filename,
                        java.lang.String dirName)

  Deprecated.
  This method saves the LUT for the active image. If the image is not a color image then both the functions and the LUT data are saved. If this is a color image, then only the functions are saved.

  Parameters:

  saveAll - boolean indicating that both lut and transfer functions should be saved. If false, then only transfer functions are saved.

  If either filename or directory is null, then the user will be prompted for a filename.

  filename - filename to save LUT as

  dirName - directory to save LUT to

• saveLUTandTransferFunction

  public void saveLUTandTransferFunction​(boolean saveAll,
                                         java.lang.String filename,
                                         java.lang.String dirName)

  Deprecated.
  This method saves the LUT for the active image. If the image is not a color image then both the functions and the LUT data are saved. If this is a color image, then only the functions are saved.

  Parameters:

  saveAll - boolean indicating that both lut and transfer functions should be saved. If false, then only transfer functions are saved.

  If either filename or directory is null, then the user will be prompted for a filename.

  filename - filename to save LUT as

  dirName - directory to save LUT to

• selectLUTa

  public void selectLUTa()

  Deprecated.
  Forces the panel to display the LUTB panel.

• selectLUTb

  public void selectLUTb()

  Deprecated.
  Forces the panel to display the LUTB panel.

• setAllOff

  public void setAllOff()

  Deprecated.
  Placeholder.

  Specified by:

  setAllOff in interface HistoLUTParent

• setCTMode

  public void setCTMode​(int st,
                        int end)

  Deprecated.
  This method is used to set Computed Tomography (CT) presets for CT images.

  Parameters:

  st - starting preset of the window

  end - ending preset of the window

  See Also:

  JDialogCT

• setHistoLUTa

  public final void setHistoLUTa​(ModelLUT lut)

  Deprecated.
  Change the histogram component LUT.

  Parameters:

  lut - the new lut

• setHistoLUTb

  public final void setHistoLUTb​(ModelLUT lut)

  Deprecated.
  Change the histogram component LUT.

  Parameters:

  lut - the new lut

• setImageA

  public void setImageA​(ModelImage image)

  Deprecated.
  Accessor that sets the imageA.

  Parameters:

  image - image to set frame to

• setImageB

  public void setImageB​(ModelImage image)

  Deprecated.
  Accessor that sets the imageB.

  Parameters:

  image - image to set frame to

• setLinearLUT

  public void setLinearLUT()

  Deprecated.
  This method sets the histogram to Linear Transfer Function Mode.

• setLUT

  public void setLUT​(ModelLUT LUT)

  Deprecated.
  Replaces the LUT and builds a new LUT component.

  Specified by:

  setLUT in interface HistoLUTParent

  Parameters:

  LUT - New LUT

• setLUTA

  public void setLUTA​(ModelLUT LUT)

  Deprecated.
  Replaces the LUT A component.

  Parameters:

  LUT - new LUT

• setLUTa

  public void setLUTa​(ModelLUT _LUTa)

  Deprecated.
  Set imageA lookup table.

  Parameters:

  _LUTa - ModelLUTa

• setLUTB

  public void setLUTB​(ModelLUT LUT)

  Deprecated.
  Replaces the LUT B component.

  Parameters:

  LUT - new LUT

• setLUTb

  public void setLUTb​(ModelLUT _LUTb)

  Deprecated.
  Set imageB lookup table.

  Parameters:

  _LUTb - ModelLUTb

• setRangeText

  public void setRangeText​(float x,
                           float y,
                           int _index)

  Deprecated.
  Set the range value of the text field.

  Specified by:

  setRangeText in interface HistoLUTParent

  Parameters:

  x - the x threshold range value

  y - the y threshold range value

  _index - the cursor index

• setSlice

  public void setSlice​(int slice)

  Deprecated.
  Does nothing in this.

  Specified by:

  setSlice in interface ViewImageUpdateInterface

  Parameters:

  slice - slice value.

• setTimeSlice

  public void setTimeSlice​(int tSlice)

  Deprecated.
  Does nothing in this class.

  Specified by:

  setTimeSlice in interface ViewImageUpdateInterface

  Parameters:

  tSlice - time slice value.

• stateChanged

  public void stateChanged​(javax.swing.event.ChangeEvent e)

  Deprecated.
  Sets values based on knob along slider.

  Specified by:

  stateChanged in interface javax.swing.event.ChangeListener

  Parameters:

  e - event that triggered this function

• updateComponentLUT

  public void updateComponentLUT()

  Deprecated.
  update the LUT and images.

  Specified by:

  updateComponentLUT in interface HistoLUTParent

• updateFrames

  public void updateFrames​(boolean flag)

  Deprecated.
  Update all of the image frames that display the image this histo lut is for.

  Specified by:

  updateFrames in interface HistoLUTParent

  Parameters:

  flag - this boolean indicates if the frame that displays the image should re-export the image and apply new LUT

  See Also:

  ModelImage.notifyImageDisplayListeners()

• updateHistoLUT

  public void updateHistoLUT​(ModelImage _imageA,
                             ModelLUT _LUTa,
                             ModelImage _imageB,
                             ModelLUT _LUTb,
                             boolean progressFlag)

  Deprecated.
  This method is called to update the histogram(s) displayed in each tabbed pane of the frame.

  Parameters:

  _imageA - image A

  _LUTa - lookup table for image A

  _imageB - image B

  _LUTb - lookup table for image B

  progressFlag - passed to calculateHistogram algorithm. If false progress bar is not displayed

• updateImageExtents

  public boolean updateImageExtents()

  Deprecated.
  This methods calls the componentImage's REPAINT method to redraw the screen. The extents on this image have changed, so the extents need to be read in again and menus, panes and slide bars adjusted accordingly.

  Specified by:

  updateImageExtents in interface ViewImageUpdateInterface

  Returns:

  return false.

• updateImages

  public boolean updateImages()

  Deprecated.
  This methods calls the componentImage's REPAINT method to redraw the screen. Without LUT changes or image changes

  Specified by:

  updateImages in interface ViewImageUpdateInterface

  Returns:

  return false.

• updateImages

  public boolean updateImages​(boolean flag)

  Deprecated.
  This methods calls the componentImage's update method to redraw the screen. Without LUT changes. Does nothing in this class.

  Specified by:

  updateImages in interface ViewImageUpdateInterface

  Parameters:

  flag - forces show to re import image and calc. java image

  Returns:

  boolean confirming successful update

• updateImages

  public boolean updateImages​(ModelLUT LUTa,
                              ModelLUT LUTb,
                              boolean flag,
                              int interpMode)

  Deprecated.
  This methods calls the componentImage's update method to redraw the screen. Does nothing in this class.

  Specified by:

  updateImages in interface ViewImageUpdateInterface

  Parameters:

  LUTa - LUT used to update imageA

  LUTb - LUT used to update imageB

  flag - forces show to re import image and calc. java image

  interpMode - image interpolation method (Nearest or Smooth)

  Returns:

  boolean confirming a successful update

• updateLUTPositionString

  public void updateLUTPositionString​(java.lang.String str)

  Deprecated.
  Sets the position string in the LUT text field.

  Specified by:

  updateLUTPositionString in interface HistoLUTParent

  Parameters:

  str - the position string

• updateThresholdFields

  public void updateThresholdFields​(float lower,
                                    float upper)

  Deprecated.
  Method to update the threshold text fields when the lower or upper threshold changes.

  Specified by:

  updateThresholdFields in interface HistoLUTParent

  Parameters:

  lower - the lower threshold value

  upper - the upper threshold value

• finalize

  protected void finalize()
                   throws java.lang.Throwable

  Deprecated.
  Calls dispose.

  Overrides:

  finalize in class java.lang.Object

  Throws:

  java.lang.Throwable - dispose memory.

• makeString

  protected java.lang.String makeString​(float number,
                                        int decPts)

  Deprecated.
  Makes a string of a float with a specific number of decimal points.

  Parameters:

  number - number to be converted to a string

  decPts - the number of decimal points

  Returns:

  string representation of the number

• testParameter

  protected boolean testParameter​(java.lang.String str,
                                  double minValue,
                                  double maxValue)

  Deprecated.
  Tests that the entered parameter is in range.

  Parameters:

  str - the value entered by the user

  minValue - the minimum value this variable may be set to

  maxValue - the maximum value this variable may be set to

  Returns:

  boolean result of test

• buildPanelA

  private void buildPanelA​(ModelImage image,
                           ModelLUT LUT,
                           boolean entireFlag)

  Deprecated.
  Method that displays the histogram and LUT and other controls to manipulate the LUT. Panel for image A.

  Parameters:

  image - Model of image

  LUT - Model of LUT

  entireFlag - Flag indicating if histogram should be made of entire image.

• buildPanelB

  private void buildPanelB​(ModelImage image,
                           ModelLUT LUT,
                           boolean entireFlag)

  Deprecated.
  Method that displays the histogram and LUT and other controls to manipulate the LUT. Panel for image B.

  Parameters:

  image - Model of image

  LUT - Model of LUT

  entireFlag - Flag indicating if histogram should be made of entire image.

• calcHistogram

  private void calcHistogram​(int imageAorB,
                             boolean entireFlag)

  Deprecated.
  Calculates histogram for the image(s).

  Parameters:

  imageAorB - flag to indicate if histogram is to be calculated for imageA or imageB.

  entireFlag - if true calculate histogram for the entire image. if false uses areas defined by VOI regions.

• setLUTs

  private void setLUTs​(ModelLUT _LUTa,
                       ModelLUT _LUTb)

  Deprecated.
  Set the gray scale image LUT tables.

  Parameters:

  _LUTa - ModelLUTA

  _LUTb - ModelLUTB