java.lang.Object
- java.awt.Component
- - java.awt.Canvas
  - - javax.media.j3d.Canvas3D
    - - gov.nih.mipav.view.renderer.J3D.VolumeCanvas3D
      - gov.nih.mipav.view.renderer.J3D.RenderViewBase
        
        gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender

All Implemented Interfaces:

com.sun.j3d.utils.behaviors.mouse.MouseBehaviorCallback, ViewImageUpdateInterface, java.awt.event.ActionListener, java.awt.event.KeyListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.beans.PropertyChangeListener, java.io.Serializable, java.util.EventListener, javax.accessibility.Accessible, javax.swing.event.ChangeListener

Direct Known Subclasses:

FlythruRender, SurfaceView
```
public class SurfaceRender
extends RenderViewBase
implements java.awt.event.KeyListener, java.beans.PropertyChangeListener
```
Frame that holds the surface renderer. This frame is only possible to activate if a three dimensional image is loaded. The image shows up in the frame as the three planes, with an axial view, a coronal view, and a sagittal view. The user can slide these planes up and down and can turn them on and off. The user can also load in surfaces created from the original image. These 3D surfaces will appear in the proper place within the three image planes. There are many options for viewing the surfaces. Additionally, the user can change the view mode, so that the mouse causes the view to "fly". The user can then record the different mouse actions and play them back.

See Also:

ViewJComponentSurfaceImage, JDialogSurface, JDialogView, JDialogMouseRecorder, Serialized Form

Nested Class Summary
- Nested classes/interfaces inherited from class gov.nih.mipav.view.renderer.J3D.RenderViewBase
  RenderViewBase.Matrix
- Nested classes/interfaces inherited from class java.awt.Canvas
  java.awt.Canvas.AccessibleAWTCanvas
- Nested classes/interfaces inherited from class java.awt.Component
  java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

Fields
Modifier and Type	Field	Description
`static int`	`ARTERIAL_SEG`	Value which indicates a voxel that is part of the arterial vasculature tree.
`static int`	`BONE_SEG`	Value which indicates a bone in the image.
`private JPanelDisplay`	`boxPanel`	Dialog to turn bounding box of surface renderer on and off, and to change the color of the frame.
`private ViewJComponentBoxSlice[]`	`boxSlices`	The frame around the AXIAL, CORONAL, SAGITTAL slices:
`private javax.vecmath.Vector3f[][]`	`boxSliceVertices`	The transformed boxSlices frames used to sample the volume data along diagonal slices:
`private JPanelClip`	`clipPanel`	Dialog to turn the clipping palne box on and off.
`private ViewJComponentSurfaceVolume`	`componentVolImage`	Volume image object.
`private javax.media.j3d.BranchGroup`	`cubicBehaviorBG`	The cubic roational behavior branch group.
`private javax.media.j3d.BranchGroup`	`cubicBG`	Cubic branch group.
`private com.sun.j3d.utils.behaviors.mouse.MouseRotate`	`cubicRotate`	Cubic mouse rotation behavior.
`private javax.media.j3d.TransformGroup`	`cubicTG`	Cubic transform group.
`private javax.media.j3d.Transform3D`	`currentTransform`	Current transform matrix.
`private int`	`currentTransformType`	Current transform changes type.
`static int`	`ENTRY_POINT`	Value which indicates the probe entry point color.
`private boolean`	`first6ClipPlane`	flag indicate the first time 6 clipping plane branch switch.
`private boolean`	`firstClipArbi`	flag indicate the first time arbitrary clipping plane branch switch.
`private JPanelGeodesic`	`geodesicPanel`	Geodesic panel.
`private ModelImage`	`imageA`	Current image A.
`private ModelImage`	`imageB`	Current image B.
`private float[]`	`imageVolBufferA`	Buffer that holds image A volume data.
`private float[]`	`imageVolBufferB`	Buffer that holds image B volume data.
`private boolean`	`isEntryPoint`	Flag indicates that probe rotate around the entry point or not.
`(package private) boolean`	`isTriPlanarVolView`	Mode is tri-planar volume view or not.
`protected boolean`	`isViewTextureAligned`	Flag to indicate whether the view volume texture is aligned or not.
`private boolean`	`m_bRenderModeLighting`	Flag set when texture volume is being rendered using lights.
`private double`	`m_dOriginalScreenScale`	Zoomfactor, zooming in screen scale space, and is relative to original position, this stores that original position:.
`private javax.media.j3d.TransformGroup[]`	`m_kObjBoxSliceProbe_TG`	TransformGroup[] used to rotate the AXIAL, CORONAL, SAGITTAL slice BOXES:
`private javax.media.j3d.TransformGroup[]`	`m_kObjPlaneProbe_TG`	TransformGroup[] used to rotate the AXIAL, CORONAL, SAGITTAL slice PLANES:
`private javax.media.j3d.Transform3D`	`m_kProbeTransform`	The Transform3D used to position the planes based on the Probe position and angle.
`(package private) javax.vecmath.Vector4f[][]`	`m_kRFACoordMaps`	Texture mapping for the RFA probe rotation:
`private SoftwareLightSet`	`m_kSoftwareLightSet`	Used to compute software lighting of composite texture volume.
`private SoftwareMaterial`	`m_kSoftwareMaterial`	DOCUMENT ME!
`private float`	`maxBox`	Numbers dicatating the sizes of the planes based on the extents and resolutions of the image.
`private JPanelMouse`	`mousePanel`	Dialog for recording and playing back mouse events.
`private MouseRotateExt`	`mouseRotateBehavior`	Mouse Rotate behavior.
`private com.sun.j3d.utils.behaviors.mouse.MouseTranslate`	`mouseTranslateBehavior`	Mouse Translate behavior.
`private com.sun.j3d.utils.behaviors.mouse.MouseZoom`	`mouseZoomBehavior`	Mouse Zoom behavior.
`private javax.vecmath.Point3d`	`myEyePoint`	Initial center viewing point of the image.
`private javax.media.j3d.BranchGroup[]`	`objBoxSlices_BG`	BranchGroup[] containing the slice BOXES:
`private javax.media.j3d.BranchGroup[]`	`objPlane_BG`	BranchGroup[] containing the image planes.
`private javax.media.j3d.TransformGroup[]`	`objTransSlices_TG`	Group dictating how the XY plane is translated.
`private boolean`	`parallelRotation`	Parallel rotation flag.
`private javax.media.j3d.Transform3D`	`parallelScaleT3D`	Transformation matrix.
`private ViewJFrameBase`	`parent`	Controls for the image.
`private JPanelProbe`	`probePanel`	Dialog for loading and displaying probes.
`protected VolumeRenderer`	`rayBasedRender`	Raycast based renderer reference, raycast renderer or shear warp renderer.
`private float[]`	`resols`	Resolutions of image A.
`private javax.media.j3d.Alpha`	`rotationAlpha`
`private int`	`rotationCount`	fix one bug from threading.
`private JPanelSculptor`	`sculptorPanel`	Sculptor panel.
`private ModelImage`	`segmentationImage`	Image with areas marked with values indicating that they are special tissue types (vessels, etc).
`private static long`	`serialVersionUID`	Use serialVersionUID for interoperability.
`private javax.media.j3d.ImageComponent2D[]`	`sliceImageComponent2D`	Each Texture2D adds a ImageComponent2D:
`private JPanelSlices`	`slicePanel`	Dialog to turn the slices control box on and off.
`private javax.media.j3d.Texture2D[]`	`sliceTextures`	ViewJComponentTriSliceImages -> Texture2D to display the image slices:
`private javax.media.j3d.TransparencyAttributes[]`	`sliceTransparency`	ViewJComponentTriSliceImages -> Texture2D transparency values:
`private JPanelSurface`	`surfacePanel`	Dialog for loading and displaying surfaces.
`private JPanelSurfaceTexture`	`surfaceTexturePanel`	Panel for displaying the SurfaceTexture interface:
`private javax.media.j3d.Switch`	`switchGroup`	Tri planar view and the 3D texture volume view switch group.
`private int`	`tDim`	Dimensions of image A.
`private VolumeTexture`	`texture`	Reference to 3D texture node for the volume.
`private javax.media.j3d.Transform3D`	`transformCubic`	Cubic tansform3D.
`private javax.media.j3d.Transform3D`	`transformNode3d`	Setup the initial position of the image, added to ScenerootTG transform group.
`private javax.media.j3d.Shape3D[]`	`triSliceGeometry`
`private ViewJComponentTriSliceImage[]`	`triSliceImages`	ImageRenderers for the AXIAL, CORONAL, SAGITTAL slices:
`static int`	`TUMOR_SEG`	Value which indicates a voxel in the segmenation image that is part of the tumor.
`static int`	`VASCULATURE_SEG`	Value which indicates a voxel in the segmenation image that is part of the vasculature (arterial or veinous).
`static int`	`VEINOUS_SEG`	Value which indicates a voxel in the segmenation image that is part of the veinous vasculature tree.
`private javax.media.j3d.View`	`view`	View object in rendering a three dimensional scene from one viewpoint.
`private javax.media.j3d.BranchGroup`	`volBG`	Volume branch group.
`private JPanelVolumeOpacity`	`volOpacityPanel`	Volume opacity control dialog.
`private javax.media.j3d.BranchGroup`	`volRenderBG`	Volume render branch group.
`private NodeVolumeTextureRender`	`volRenderNode`	Add here.
`private javax.media.j3d.OrderedGroup`	`volRenderOG`	Volume render order group, specify the rendering order.
`private boolean`	`volumeDisplayMode3D`	If true display 3D volume as a 3D texture map or 2D array of texture maps.
`private float`	`xBox`	Numbers dicatating the sizes of the planes based on the extents and resolutions of the image.
`private int`	`xDim`	Dimensions of image A.
`private float`	`yBox`	Numbers dicatating the sizes of the planes based on the extents and resolutions of the image.
`private int`	`yDim`	Dimensions of image A.
`private float`	`zBox`	Numbers dicatating the sizes of the planes based on the extents and resolutions of the image.
`private int`	`zDim`	Dimensions of image A.

Fields inherited from class gov.nih.mipav.view.renderer.J3D.RenderViewBase
background, bounds, boxFrame, canvas, captureFrame, captureImage, config, displayMode, IMAGE_A, IMAGE_B, LUTa, LUTb, objBehaviorBG, objBoxFrameBG, objRootBG, rotationAngle, rotationAxis, rotationControlPanel, rotationTimes, rotationTotal, sceneRootTG, sliderEvents, transRotation, transRotationMatrix, triPlanarViewBG, universe, viewPanel

Fields inherited from class gov.nih.mipav.view.renderer.J3D.VolumeCanvas3D
m_dAccumulatedTime, m_dFrameRate, m_dLastTime, m_iAccumulatedFrameCount, m_iFrameCount, m_iMaxTimer, m_iTimer

Fields inherited from class javax.media.j3d.Canvas3D
FIELD_ALL, FIELD_LEFT, FIELD_RIGHT

Fields inherited from class java.awt.Component
accessibleContext, BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver
ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Fields inherited from interface com.sun.j3d.utils.behaviors.mouse.MouseBehaviorCallback
ROTATE, TRANSLATE, ZOOM

Constructor Summary

Constructors
Constructor	Description
`SurfaceRender(ModelImage _imageA, ModelImage _imageB, java.awt.GraphicsConfiguration _config)`	Constructor called by the VirtualEndoscopyView.
`SurfaceRender(ModelImage _imageA, ModelLUT _LUTa, ModelImage _imageB, ModelLUT _LUTb, ViewJFrameBase _parent, java.awt.GraphicsConfiguration _config, ViewJProgressBar _pBar)`	Makes a frame and puts the three image planes into it.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`actionPerformed(java.awt.event.ActionEvent event)`	Calls various methods depending on the action.
`private void`	`addBoxSlice(int orientation)`	Adds the slice frame for slice of the given orientation to the scene graph.
`void`	`addCubicControl()`	Attach cubic control branch group.
`void`	`autoCapture()`	Overrides the parent autoCapture method.
`private com.sun.j3d.utils.geometry.Box`	`buildCubicBox()`	Create the rotation control cubic box.
`private void`	`buildCubicBranch()`	Build the cubic branch under the objRootBG.
`void`	`cleanMouseRecorder()`	Clean mouse recorder for any existing event items.
`void`	`close()`	Closes the image.
`private void`	`configureSliceFrame()`	Constructs main frame structures for 3 image planes.
`void`	`configureVolumeFrame()`	Constructs main frame structures for 3 image planes.
`private void`	`createImageSceneGraph()`	Creates the scene graph, made up of a branch group parent, a transform group under that which applies mouse behavior and lights to the scene, and three branch groups under the transform group for each of the three image planes.
`void`	`cropClipVolume()`	Crop the region of the clipped volume.
`void`	`detachVolRender()`	Detach volume render branch group.
`void`	`disableClipping()`	Diable all the six clipping planes at a time.
`void`	`dispatchSavedEvent(java.util.EventObject event)`	Dispatches event to appropriate object.
`void`	`disposeLocal(boolean flag)`	Sets all variables to null, disposes, and garbage collects.
`void`	`drawRFAPoint(javax.vecmath.Point3f kPoint)`	Called from the parent class when the Probe Entry Point is selected in the PlaneRender object.
`void`	`enableEntryPoint(boolean flag)`	Set entry point rotation flag.
`void`	`enableObjBehavior(boolean flag)`	Enable objBehavior branch group.
`private void`	`generateRFACoordMaps()`	Generates the texture coord map vectors for the three orthogonal slices.
`private javax.vecmath.Vector4f`	`generateRFACoordMaps(int orientation, int texCoord)`	create texture coordmaps for the texture-mapped planes displaying the triSliceImages.
`private void`	`getBoxSliceInScreen(javax.vecmath.Vector3f[] screenBoxPoints, int[] boxSliceConstants)`	sets up the values for the ViewJComponentBoxSlice array.
`JPanelCamera`	`getCameraControl()`	Get the rotation control dialog box.
`JPanelClip`	`getClipDialog()`	Return clipPanel from parent frame.
`JPanelDisplay`	`getDisplayDialog()`	Return the diaplay dialog.
`boolean`	`getDisplayMode3D()`	Return the current volume display mode.
`JPanelGeodesic`	`getGeodesicPanel()`	Get the geodesic control panel.
`ModelImage`	`getImageA()`	Accessor that returns the reference to image A.
`ModelImage`	`getImageB()`	Accessor that returns the reference to image B.
`JPanelMouse`	`getMouseDialog()`	Return mousePanel from parent frame.
`int`	`getMouseMode()`	Gets the mouse pointer mode - standard or fly - from the view dialog.
`javax.media.j3d.BranchGroup`	`getObjBoxSlice_BG(int orientation)`	Return the X box color frame.
`javax.media.j3d.BranchGroup`	`getObjPlane_BG(int orientation)`	Gets the objXYPlaneBG branch group.
`double`	`getOriginalScreenScale()`	Return the original ScreenScale for orthographic projection:
`ViewJFrameVolumeView`	`getParentFrame()`	Return the parent frame.
`JPanelProbe`	`getProbeDialog()`	Return probePanel from parent frame.
`float[]`	`getResolutions()`	Returns the ModelImage resolutions.
`java.lang.Object`	`getSceneState()`	Gets the current scene state, in terms of what numbers the slices are on and whether or not they are visible.
`JPanelSculptor`	`getSculptorPanel()`	Return the sculptor panel.
`ModelImage`	`getSegmentationImage()`	Return the segmentation region map image which contains info on where the vascualture, etc are located.
`JPanelSlices`	`getSlicePanel()`	return the current active slicePanel interface.
`float`	`getSliceSpacingCoarse()`	Retrieve the current "coarse" spacing between slices.
`float`	`getSliceSpacingFine()`	Retrieve the current "fine" spacing between slices.
`JPanelSurface`	`getSurfaceDialog()`	Return surfacePanel from parent frame.
`JPanelSurfaceTexture`	`getSurfaceTexture()`	Returns the surface texture panel interface.
`javax.swing.JPanel`	`getSurfaceTexturePanel()`	Returns the surface texture panel mainPanel interface.
`JPanelView`	`getViewDialog()`	Return the viewPanel from parent frame.
`JPanelVolumeOpacity`	`getVolOpacityPanel()`	Return volume opacity control Dialog from parent frame.
`javax.media.j3d.BranchGroup`	`getVolRenderBG()`	Return volume render Branch Group.
`javax.media.j3d.OrderedGroup`	`getVolRenderOG()`	Return volume render Order Group.
`VolumeTexture`	`getVolumeTexture()`	Return texture, the VolumeTexture member variable.
`javax.media.j3d.Group`	`getVolumeTextureCopy(int iView)`	Returns the left of right eye copy of the NodeVolumeTextureRender:
`void`	`hideBoxFrame()`	Makes the box frame invisible.
`void`	`invokeClipping()`	Enable the six clipping planes at a time.
`boolean`	`isVolViewMode()`	Check is volume view frame or not.
`void`	`keyPressed(java.awt.event.KeyEvent arg0)`
`void`	`keyReleased(java.awt.event.KeyEvent arg0)`
`void`	`keyTyped(java.awt.event.KeyEvent arg0)`
`void`	`ModelToScreen(javax.vecmath.Vector3f model, javax.vecmath.Vector3f screen)`	Translate from Model coordinates to normalized plane coordinates:
`void`	`propertyChange(java.beans.PropertyChangeEvent arg0)`
`void`	`reConfigureVolumeFrame()`	Constructs main frame structures for 3 image planes.
`void`	`removeBoxSlice(int orientation)`	Detaches the slice frame on the slice for the given orientation.
`void`	`removeCubicControl()`	Detach cubic control branch group.
`void`	`resetAxisX()`	Overrides the parent resetImage method.
`void`	`resetAxisY()`	Overrides the parent resetImage method.
`void`	`resetImage()`	Overrides the parent resetImage method.
`void`	`rotateImage()`	Overrides the rotateImage to rotate the surface volume.
`void`	`saveCropVolume()`	Save crop region with the clipped volume.
`private void`	`ScreenToModel(javax.vecmath.Vector3f screen, javax.vecmath.Vector3f model)`	Translate from normalized plane coordinates to Model coordinates:
`void`	`setAlphaBlend(int value)`	Sets the alpha blending of parameter for two image displays.
`void`	`setCenter(javax.vecmath.Vector3f center)`	Sets the values for JPanelSlices, based on the positions in the PlaneRender class for the AXIAL, CORONAL, and SAGITTAL views.
`void`	`setCompositeMode()`	Set the texture renderer to render in composite mode.
`void`	`setDisplayMode3D(boolean flag)`	Hack.
`void`	`setGUI(java.lang.Object scene)`	Sets the GUI components to their proper state before the action is dispatched from the player.
`void`	`setLightingMode()`	Set the texture render to render in lighting mode.
`void`	`setLUTa(ModelLUT LUT)`	Accessor that sets the LUT for image A.
`void`	`setLUTb(ModelLUT LUT)`	Accessor that sets the LUT for image B.
`void`	`setMaterialShininess(float value)`	Set the texture material shininess value.
`void`	`setMouseMode(int mode)`	Sets the mouse pointer mode - standard or fly - in the view dialog.
`void`	`setMouseRotateEnable(boolean bEnable)`	Allow disabling or enabling mouse rotation:
`void`	`setParallelRotation(boolean flag)`	Set the parallel rotation flag from the viewJFrameVolumeView.
`void`	`setProbeTG(javax.media.j3d.Transform3D kTransform, boolean bTwist)`	Sets the Transform3D for the slices based on the Probe Transform.
`void`	`setRayBasedRender(VolumeRenderer _rayBasedRender)`	Set the reference to ray based renderer, raycast renderer or shear warp renderer.
`void`	`setRenderPerspective(boolean bEnable)`	Enable perspective projection rendering; otherwise use orthographic projection.
`void`	`setRGBTA(ModelRGB RGBT)`	Sets the RGB table for image A.
`void`	`setRGBTB(ModelRGB RGBT)`	Sets the RGB table for image B.
`void`	`setSegmentationImage(ModelImage img)`	Set the image which we can check to see if the probe is hitting anything important (such as vessels, etc).
`void`	`setSlice(int slice)`	Does nothing but must instantiate for this to implements ViewImageUpdateInterface.
`void`	`setSliceColor(java.awt.Color color, int orientation)`	Sets the color of the x slice frame.
`void`	`setSliceSpacingCoarse(float fSpacing)`	Set the desired "coarse" spacing between slices.
`void`	`setSliceSpacingFine(float fSpacing)`	Set the desired "fine" spacing between slices.
`void`	`setTimeSlice(int slice)`	Sets the time slice to be displayed and changes the image planes displayed.
`private void`	`setupEye()`	Set up the center point of the red line boxframe.
`void`	`setViewTextureAligned(boolean flag)`	Switch between the volume texture mode and the regular volume texture mode.
`void`	`setVolumeDisplayMode(boolean volDisplayMode)`	Accessor that sets the volumeDisplayMode flag.
`void`	`setVolView(boolean flag)`	Set the volume view mode to true from the ViewJFrameVolumeView During mouse recorder displaying, the flag control the updating of the opacity histogram.
`void`	`showBoxFrame()`	Makes the box frame visible.
`void`	`showBoxSlice(int orientation)`	Makes the box slice for the given orientation visible.
`void`	`stateChanged(javax.swing.event.ChangeEvent e)`	Sets how the image plane should be displayed depending on value of slider.
`void`	`switchToSliceView(boolean firstTime)`	Perform some actions required when switching to the slice renderer.
`void`	`switchToVolView(boolean firstTime)`	Perform some actions required when switching to the volume renderer.
`private void`	`transformBoxSlices(javax.media.j3d.Transform3D kTransform)`	transform the points used to render the triSliceImages textures.
`void`	`transformChanged(int type, javax.media.j3d.Transform3D transform)`	Tells the mouse dialog that the transform has changed.
`void`	`transformUpdate(int type, javax.media.j3d.Transform3D transform)`	The raybased renderer invokes this method when a mouse release event occurs.
`void`	`undoCropVolume()`	Undo crop region with the clipped volume.
`boolean`	`update3DTriplanar(ModelLUT LUTa, ModelLUT LUTb, boolean forceShow)`	This methods calls the componentImage's update method to redraw the screen.
`void`	`updateBoxSlicePos(boolean bParentUpdate)`	Update the X, Y, Z box frame positions.
`void`	`updateBoxSlices()`	Sets new frame around slice x based on the new position.
`void`	`updateCubicTransform(double[] mat)`	Update the transform3D for the cubic.
`void`	`updateCubicTransform(javax.media.j3d.Transform3D transform)`	Update the transform3D for the cubic.
`void`	`updateData()`	Called when the underlying data has changed, due to sculpting.
`boolean`	`updateImageExtents()`	This methods calls the componentImage's REPAINT method to redraw the screen.
`void`	`updateImageFromRotation()`	Build a image with the current rotational transformation matrix.
`boolean`	`updateImages()`	This methods calls the componentImage's update method to redraw the screen - fastest of the three update methods.
`boolean`	`updateImages(boolean flag)`	This methods calls the componentImage's update method to redraw the screen.
`boolean`	`updateImages(ModelLUT LUTa, ModelLUT LUTb, boolean forceShow, int interpMode)`	This methods calls the componentImage's update method to redraw the screen.
`void`	`updateLighting()`	This method is normally called by JPanelLights when a light bulb property changes.
`void`	`updateOpacityOfOthrogPlanes(int opX, int opY, int opZ)`	Updates the 3 orthogonal 2D texture maps' opacities.
`void`	`updateParent()`
`void`	`updateProbe(boolean forceShow, boolean bInterpolate, boolean bReset)`	Updates the slice textures based on the Probe position and rotation angle.
`void`	`updateProbePos()`	Not used now.
`void`	`updateRaycastRender()`	Update the raycast based renderer.
`void`	`updateShininess(float value)`	Update the shininess from the JPanelLights.
`private void`	`updateTextureVolumeRender()`	Determine the current viewing transformation and pass it to the texture volume renderer so that it can update itself.
`void`	`updateTransform()`	Tells the mouse dialog that the transform has changed.
`private void`	`updateViewScreenScale(javax.media.j3d.Transform3D kTransform)`	This function calculates the scale factor for zooming in parallel projection.
`boolean`	`updateVolume(ModelLUT LUTa, ModelLUT LUTb, boolean forceShow)`	This methods calls the componentImage's update method to redraw the screen.
`void`	`useSliceSpacingCoarse()`	Select the "coarse" slice sampling for rendering.
`void`	`useSliceSpacingFine()`	Retrieves whether the "fine" slice sampling is currently selected.
`int`	`whichTissue(float x, float y, float z)`	Check the given voxel belong to which segmentation.

Methods inherited from class gov.nih.mipav.view.renderer.J3D.RenderViewBase
calcImageNormals, createBoxFrame, disableCamera, disposeLocal, getBehaviorGroup, getBound, getBranchGroup, getCanvas, getNormals, getRGBTA, getRGBTB, getSceneRootTG, getSliderEvents, getTriPlanarViewBG, getUniverse, recordMouse, setBackgroundColor, setBoxColor, setRotationAngle, setRotationAxis, writeImage, writeImageAuto

Methods inherited from class gov.nih.mipav.view.renderer.J3D.VolumeCanvas3D
GetTestFrameRate, MeasureTime, paint, postSwap, ResetTime, SetTestFrameRate, supportsTexture3D, update, UpdateFrameCount

Methods inherited from class javax.media.j3d.Canvas3D
addNotify, getBounds, getBounds, getCenterEyeInImagePlate, getDoubleBufferAvailable, getDoubleBufferEnable, getGraphics2D, getGraphicsContext3D, getHeight, getImagePlateToVworld, getInverseVworldProjection, getLeftEyeInImagePlate, getLeftManualEyeInImagePlate, getLocation, getLocation, getLocationOnScreen, getMonoscopicViewPolicy, getOffScreenBuffer, getOffScreenLocation, getOffScreenLocation, getPhysicalHeight, getPhysicalWidth, getPixelLocationFromImagePlate, getPixelLocationInImagePlate, getPixelLocationInImagePlate, getRightEyeInImagePlate, getRightManualEyeInImagePlate, getSceneAntialiasingAvailable, getScreen3D, getSize, getSize, getStereoAvailable, getStereoEnable, getView, getVworldProjection, getVworldToImagePlate, getWidth, getX, getY, isOffScreen, isRendererRunning, isShadingLanguageSupported, postRender, preRender, queryProperties, removeNotify, renderField, renderOffScreenBuffer, setDoubleBufferEnable, setLeftManualEyeInImagePlate, setMonoscopicViewPolicy, setOffScreenBuffer, setOffScreenLocation, setOffScreenLocation, setRightManualEyeInImagePlate, setStereoEnable, startRenderer, stopRenderer, swap, waitForOffScreenRendering

Methods inherited from class java.awt.Canvas
createBufferStrategy, createBufferStrategy, getAccessibleContext, getBufferStrategy

Methods inherited from class java.awt.Component
action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, deliverEvent, disable, disableEvents, dispatchEvent, doLayout, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getAlignmentX, getAlignmentY, getBackground, getBaseline, getBaselineResizeBehavior, getColorModel, getComponentAt, getComponentAt, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeys, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphics, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getListeners, getLocale, getMaximumSize, getMinimumSize, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPreferredSize, getPropertyChangeListeners, getPropertyChangeListeners, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, invalidate, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusCycleRoot, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isOpaque, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, layout, list, list, list, list, list, locate, location, lostFocus, minimumSize, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, paramString, postEvent, preferredSize, prepareImage, prepareImage, print, printAll, processComponentEvent, processEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, repaint, requestFocus, requestFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, requestFocusInWindow, reshape, resize, resize, revalidate, setBackground, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeys, setFocusTraversalKeysEnabled, setFont, setForeground, setIgnoreRepaint, setLocale, setLocation, setLocation, setMaximumSize, setMinimumSize, setMixingCutoutShape, setName, setPreferredSize, setSize, setSize, setVisible, show, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle, validate

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

- Field Detail
  - serialVersionUID
```
private static final long serialVersionUID
```
    Use serialVersionUID for interoperability.
    
    See Also:
    
    Constant Field Values
  - ARTERIAL_SEG
```
public static final int ARTERIAL_SEG
```
    Value which indicates a voxel that is part of the arterial vasculature tree.
    
    See Also:
    
    Constant Field Values
  - VEINOUS_SEG
```
public static final int VEINOUS_SEG
```
    Value which indicates a voxel in the segmenation image that is part of the veinous vasculature tree.
    
    See Also:
    
    Constant Field Values
  - VASCULATURE_SEG
```
public static final int VASCULATURE_SEG
```
    Value which indicates a voxel in the segmenation image that is part of the vasculature (arterial or veinous).
    
    See Also:
    
    Constant Field Values
  - TUMOR_SEG
```
public static final int TUMOR_SEG
```
    Value which indicates a voxel in the segmenation image that is part of the tumor.
    
    See Also:
    
    Constant Field Values
  - BONE_SEG
```
public static final int BONE_SEG
```
    Value which indicates a bone in the image.
    
    See Also:
    
    Constant Field Values
  - ENTRY_POINT
```
public static final int ENTRY_POINT
```
    Value which indicates the probe entry point color.
    
    See Also:
    
    Constant Field Values
  - isViewTextureAligned
```
protected boolean isViewTextureAligned
```
    Flag to indicate whether the view volume texture is aligned or not.
  - rayBasedRender
```
protected VolumeRenderer rayBasedRender
```
    Raycast based renderer reference, raycast renderer or shear warp renderer.
  - isTriPlanarVolView
```
boolean isTriPlanarVolView
```
    Mode is tri-planar volume view or not.
  - boxPanel
```
private JPanelDisplay boxPanel
```
    Dialog to turn bounding box of surface renderer on and off, and to change the color of the frame.
  - boxSlices
```
private final ViewJComponentBoxSlice[] boxSlices
```
    The frame around the AXIAL, CORONAL, SAGITTAL slices:
  - boxSliceVertices
```
private javax.vecmath.Vector3f[][] boxSliceVertices
```
    The transformed boxSlices frames used to sample the volume data along diagonal slices:
  - clipPanel
```
private JPanelClip clipPanel
```
    Dialog to turn the clipping palne box on and off.
  - triSliceImages
```
private final ViewJComponentTriSliceImage[] triSliceImages
```
    ImageRenderers for the AXIAL, CORONAL, SAGITTAL slices:
  - triSliceGeometry
```
private final javax.media.j3d.Shape3D[] triSliceGeometry
```
  - componentVolImage
```
private ViewJComponentSurfaceVolume componentVolImage
```
    Volume image object.
  - cubicBehaviorBG
```
private javax.media.j3d.BranchGroup cubicBehaviorBG
```
    The cubic roational behavior branch group.
  - cubicBG
```
private javax.media.j3d.BranchGroup cubicBG
```
    Cubic branch group.
  - cubicRotate
```
private com.sun.j3d.utils.behaviors.mouse.MouseRotate cubicRotate
```
    Cubic mouse rotation behavior.
  - cubicTG
```
private javax.media.j3d.TransformGroup cubicTG
```
    Cubic transform group.
  - currentTransform
```
private javax.media.j3d.Transform3D currentTransform
```
    Current transform matrix.
  - currentTransformType
```
private int currentTransformType
```
    Current transform changes type.
  - first6ClipPlane
```
private boolean first6ClipPlane
```
    flag indicate the first time 6 clipping plane branch switch.
  - firstClipArbi
```
private boolean firstClipArbi
```
    flag indicate the first time arbitrary clipping plane branch switch.
  - geodesicPanel
```
private JPanelGeodesic geodesicPanel
```
    Geodesic panel.
  - imageA
```
private ModelImage imageA
```
    Current image A.
  - imageB
```
private ModelImage imageB
```
    Current image B.
  - imageVolBufferA
```
private float[] imageVolBufferA
```
    Buffer that holds image A volume data.
  - imageVolBufferB
```
private float[] imageVolBufferB
```
    Buffer that holds image B volume data.
  - isEntryPoint
```
private boolean isEntryPoint
```
    Flag indicates that probe rotate around the entry point or not.
  - m_bRenderModeLighting
```
private boolean m_bRenderModeLighting
```
    Flag set when texture volume is being rendered using lights.
  - m_dOriginalScreenScale
```
private double m_dOriginalScreenScale
```
    Zoomfactor, zooming in screen scale space, and is relative to original position, this stores that original position:.
  - m_kObjBoxSliceProbe_TG
```
private final javax.media.j3d.TransformGroup[] m_kObjBoxSliceProbe_TG
```
    TransformGroup[] used to rotate the AXIAL, CORONAL, SAGITTAL slice BOXES:
  - m_kObjPlaneProbe_TG
```
private final javax.media.j3d.TransformGroup[] m_kObjPlaneProbe_TG
```
    TransformGroup[] used to rotate the AXIAL, CORONAL, SAGITTAL slice PLANES:
  - m_kProbeTransform
```
private javax.media.j3d.Transform3D m_kProbeTransform
```
    The Transform3D used to position the planes based on the Probe position and angle. The planes are rotates about the intersection between the probe and the plane, which may or may not be in the center of the plane. This transform allows non-origin rotations by conactenating the translation to the origin, rotation, and translation matricies into one transform, which is used to set the Transforms for the TransformGroups above and also to sample the ModelImage data on the diagonal slice:
  - m_kSoftwareLightSet
```
private SoftwareLightSet m_kSoftwareLightSet
```
    Used to compute software lighting of composite texture volume.
  - m_kSoftwareMaterial
```
private SoftwareMaterial m_kSoftwareMaterial
```
    DOCUMENT ME!
  - mousePanel
```
private JPanelMouse mousePanel
```
    Dialog for recording and playing back mouse events.
  - mouseRotateBehavior
```
private MouseRotateExt mouseRotateBehavior
```
    Mouse Rotate behavior.
  - mouseTranslateBehavior
```
private com.sun.j3d.utils.behaviors.mouse.MouseTranslate mouseTranslateBehavior
```
    Mouse Translate behavior.
  - mouseZoomBehavior
```
private com.sun.j3d.utils.behaviors.mouse.MouseZoom mouseZoomBehavior
```
    Mouse Zoom behavior.
  - myEyePoint
```
private final javax.vecmath.Point3d myEyePoint
```
    Initial center viewing point of the image.
  - objBoxSlices_BG
```
private final javax.media.j3d.BranchGroup[] objBoxSlices_BG
```
    BranchGroup[] containing the slice BOXES:
  - objTransSlices_TG
```
private final javax.media.j3d.TransformGroup[] objTransSlices_TG
```
    Group dictating how the XY plane is translated.
  - objPlane_BG
```
private final javax.media.j3d.BranchGroup[] objPlane_BG
```
    BranchGroup[] containing the image planes.
  - parallelRotation
```
private boolean parallelRotation
```
    Parallel rotation flag.
  - parallelScaleT3D
```
private javax.media.j3d.Transform3D parallelScaleT3D
```
    Transformation matrix.
  - parent
```
private ViewJFrameBase parent
```
    Controls for the image. ViewJFrameVolumeView
  - probePanel
```
private JPanelProbe probePanel
```
    Dialog for loading and displaying probes.
  - resols
```
private float[] resols
```
    Resolutions of image A.
  - rotationCount
```
private int rotationCount
```
    fix one bug from threading.
  - sculptorPanel
```
private JPanelSculptor sculptorPanel
```
    Sculptor panel.
  - segmentationImage
```
private ModelImage segmentationImage
```
    Image with areas marked with values indicating that they are special tissue types (vessels, etc).
  - slicePanel
```
private JPanelSlices slicePanel
```
    Dialog to turn the slices control box on and off.
  - surfacePanel
```
private JPanelSurface surfacePanel
```
    Dialog for loading and displaying surfaces.
  - surfaceTexturePanel
```
private JPanelSurfaceTexture surfaceTexturePanel
```
    Panel for displaying the SurfaceTexture interface:
  - switchGroup
```
private javax.media.j3d.Switch switchGroup
```
    Tri planar view and the 3D texture volume view switch group.
  - rotationAlpha
```
private javax.media.j3d.Alpha rotationAlpha
```
  - sliceTransparency
```
private final javax.media.j3d.TransparencyAttributes[] sliceTransparency
```
    ViewJComponentTriSliceImages -> Texture2D transparency values:
  - texture
```
private VolumeTexture texture
```
    Reference to 3D texture node for the volume.
  - sliceTextures
```
private final javax.media.j3d.Texture2D[] sliceTextures
```
    ViewJComponentTriSliceImages -> Texture2D to display the image slices:
  - sliceImageComponent2D
```
private final javax.media.j3d.ImageComponent2D[] sliceImageComponent2D
```
    Each Texture2D adds a ImageComponent2D:
  - m_kRFACoordMaps
```
javax.vecmath.Vector4f[][] m_kRFACoordMaps
```
    Texture mapping for the RFA probe rotation:
  - transformCubic
```
private javax.media.j3d.Transform3D transformCubic
```
    Cubic tansform3D.
  - transformNode3d
```
private javax.media.j3d.Transform3D transformNode3d
```
    Setup the initial position of the image, added to ScenerootTG transform group.
  - view
```
private javax.media.j3d.View view
```
    View object in rendering a three dimensional scene from one viewpoint.
  - volBG
```
private javax.media.j3d.BranchGroup volBG
```
    Volume branch group.
  - volOpacityPanel
```
private JPanelVolumeOpacity volOpacityPanel
```
    Volume opacity control dialog.
  - volRenderBG
```
private javax.media.j3d.BranchGroup volRenderBG
```
    Volume render branch group.
  - volRenderNode
```
private NodeVolumeTextureRender volRenderNode
```
    Add here.
  - volRenderOG
```
private javax.media.j3d.OrderedGroup volRenderOG
```
    Volume render order group, specify the rendering order.
  - volumeDisplayMode3D
```
private boolean volumeDisplayMode3D
```
    If true display 3D volume as a 3D texture map or 2D array of texture maps. If false display 3 orthogonal image planes.
  - xBox
```
private float xBox
```
    Numbers dicatating the sizes of the planes based on the extents and resolutions of the image.
  - yBox
```
private float yBox
```
    Numbers dicatating the sizes of the planes based on the extents and resolutions of the image.
  - zBox
```
private float zBox
```
    Numbers dicatating the sizes of the planes based on the extents and resolutions of the image.
  - maxBox
```
private float maxBox
```
    Numbers dicatating the sizes of the planes based on the extents and resolutions of the image.
  - xDim
```
private int xDim
```
    Dimensions of image A.
  - yDim
```
private int yDim
```
    Dimensions of image A.
  - zDim
```
private int zDim
```
    Dimensions of image A.
  - tDim
```
private int tDim
```
    Dimensions of image A.
- Constructor Detail
  - SurfaceRender
```
public SurfaceRender(ModelImage _imageA,
                     ModelImage _imageB,
                     java.awt.GraphicsConfiguration _config)
```
    Constructor called by the VirtualEndoscopyView. Used for instantiation.
    
    Parameters:
    
    _imageA - ModelImage imageA
    
    _imageB - ModelImage imageB always null
    
    _config - GraphicsConfiguration graphics configuration
  - SurfaceRender
```
public SurfaceRender(ModelImage _imageA,
                     ModelLUT _LUTa,
                     ModelImage _imageB,
                     ModelLUT _LUTb,
                     ViewJFrameBase _parent,
                     java.awt.GraphicsConfiguration _config,
                     ViewJProgressBar _pBar)
```
    Makes a frame and puts the three image planes into it. Creates the scene graph which dictates the behavior of the image planes and surfaces. Initializes the surface dialog and the mouse recorder dialog, so that this original view is saved. When the user opens these dialogs, they have already been created; they are just set to visible.
    
    Parameters:
    
    _imageA - First image to display, cannot be null.
    
    _LUTa - LUT of the imageA (if null grayscale LUT is constructed).
    
    _imageB - Second loaded image, may be null.
    
    _LUTb - LUT of the imageB, may be null.
    
    _parent - Frame base reference.
    
    _config - configuration reference.
    
    _pBar - progress bar
- Method Detail
  - actionPerformed
```
public void actionPerformed(java.awt.event.ActionEvent event)
```
    Calls various methods depending on the action.
    
    Surface - opens the surface dialog
    
    View - opens the view control dialog
    
    Mouse - opens the mouse recorder dialog
    
    About - displays a message about this renderer
    
    Exit - sets variables to null and disposes of this frame
    
    X, Y, Z checkboxes - toggles the appropriate image planes on or off
    Specified by:
    
    actionPerformed in interface java.awt.event.ActionListener
    
    Parameters:
    
    event - Event that triggered function.
  - addBoxSlice
```
private void addBoxSlice(int orientation)
```
    Adds the slice frame for slice of the given orientation to the scene graph. It is necessary to make a new branch group and transform group because otherwise there is a RestrictedAccessException.
    
    Parameters:
    
    orientation - the slice to add: AXIAL, CORONAL, or SAGITTAL
  - addCubicControl
```
public void addCubicControl()
```
    Attach cubic control branch group.
  - autoCapture
```
public void autoCapture()
```
    Overrides the parent autoCapture method. Camera use this method to take snapshot automatically.
    
    Overrides:
    
    autoCapture in class RenderViewBase
  - cleanMouseRecorder
```
public void cleanMouseRecorder()
```
    Clean mouse recorder for any existing event items.
  - close
```
public void close()
```
    Closes the image.
  - configureVolumeFrame
```
public void configureVolumeFrame()
```
    Constructs main frame structures for 3 image planes. Makes the LUT if necessary, then sets up the buffer arrays appropriately and calls the constructors for the three image planes.
  - cropClipVolume
```
public void cropClipVolume()
```
    Crop the region of the clipped volume.
  - detachVolRender
```
public void detachVolRender()
```
    Detach volume render branch group.
  - disableClipping
```
public void disableClipping()
```
    Diable all the six clipping planes at a time.
  - dispatchSavedEvent
```
public void dispatchSavedEvent(java.util.EventObject event)
```
    Dispatches event to appropriate object.
    
    Parameters:
    
    event - Event to dispatch.
  - disposeLocal
```
public void disposeLocal(boolean flag)
```
    Sets all variables to null, disposes, and garbage collects.
    
    Parameters:
    
    flag - DOCUMENT ME!
  - drawRFAPoint
```
public void drawRFAPoint(javax.vecmath.Point3f kPoint)
```
    Called from the parent class when the Probe Entry Point is selected in the PlaneRender object.
    
    Parameters:
    
    kPoint - probe entry point in ModelStorageBase Coordinates
  - enableEntryPoint
```
public void enableEntryPoint(boolean flag)
```
    Set entry point rotation flag.
    
    Parameters:
    
    flag - boolean
  - enableObjBehavior
```
public void enableObjBehavior(boolean flag)
```
    Enable objBehavior branch group.
    
    Parameters:
    
    flag - true means turn on, false means turn off.
  - getCameraControl
```
public JPanelCamera getCameraControl()
```
    Get the rotation control dialog box.
    
    Returns:
    
    rotationControlDialog rotation control dialog
  - getClipDialog
```
public JPanelClip getClipDialog()
```
    Return clipPanel from parent frame.
    
    Returns:
    
    clipPanel Clip Dialog box.
  - getDisplayDialog
```
public JPanelDisplay getDisplayDialog()
```
    Return the diaplay dialog.
    
    Returns:
    
    boxPanel Display dialog.
  - getDisplayMode3D
```
public boolean getDisplayMode3D()
```
    Return the current volume display mode.
    
    Returns:
    
    volumeDisplayMode3D volume 3D diaplay mode.
  - getGeodesicPanel
```
public JPanelGeodesic getGeodesicPanel()
```
    Get the geodesic control panel.
    
    Returns:
    
    JPanelGeodesic geodesic control panel.
  - getImageA
```
public ModelImage getImageA()
```
    Accessor that returns the reference to image A.
    
    Overrides:
    
    getImageA in class RenderViewBase
    
    Returns:
    
    Image A.
  - getImageB
```
public ModelImage getImageB()
```
    Accessor that returns the reference to image B.
    
    Overrides:
    
    getImageB in class RenderViewBase
    
    Returns:
    
    Image B.
  - getMouseDialog
```
public JPanelMouse getMouseDialog()
```
    Return mousePanel from parent frame.
    
    Returns:
    
    mousePanel Mouse Dialog box.
  - getMouseMode
```
public int getMouseMode()
```
    Gets the mouse pointer mode - standard or fly - from the view dialog.
    
    Returns:
    
    The mouse pointer mode.
  - getObjBoxSlice_BG
```
public javax.media.j3d.BranchGroup getObjBoxSlice_BG(int orientation)
```
    Return the X box color frame.
    
    Returns:
    
    objBoxSliceX_BG Called be the JDialogSliceBox
  - getObjPlane_BG
```
public javax.media.j3d.BranchGroup getObjPlane_BG(int orientation)
```
    Gets the objXYPlaneBG branch group.
    
    Returns:
    
    objXYPlaneBG called by JDialogSliceBox
  - getOriginalScreenScale
```
public double getOriginalScreenScale()
```
    Return the original ScreenScale for orthographic projection:
    
    Returns:
    
    DOCUMENT ME!
  - getParentFrame
```
public ViewJFrameVolumeView getParentFrame()
```
    Return the parent frame.
    
    Returns:
    
    ViewJFrameVolumeView parent frame
  - getProbeDialog
```
public JPanelProbe getProbeDialog()
```
    Return probePanel from parent frame.
    
    Returns:
    
    probePanel Probe Dialog box.
  - getSceneState
```
public java.lang.Object getSceneState()
```
    Gets the current scene state, in terms of what numbers the slices are on and whether or not they are visible.
    
    Specified by:
    
    getSceneState in class RenderViewBase
    
    Returns:
    
    A SceneState object with the variables set appropriately.
  - getSculptorPanel
```
public JPanelSculptor getSculptorPanel()
```
    Return the sculptor panel.
    
    Returns:
    
    JPanelSculptor sculptor control panel.
  - getSegmentationImage
```
public ModelImage getSegmentationImage()
```
    Return the segmentation region map image which contains info on where the vascualture, etc are located.
    
    Returns:
    
    (vessel, etc) segmentation image
  - getSlicePanel
```
public JPanelSlices getSlicePanel()
```
    return the current active slicePanel interface.
    
    Returns:
    
    slicePanel called by JDialogMouseRecorder
  - getSliceSpacingCoarse
```
public float getSliceSpacingCoarse()
```
    Retrieve the current "coarse" spacing between slices.
    
    Returns:
    
    float Current "coarse" spacing between slices.
  - getSliceSpacingFine
```
public float getSliceSpacingFine()
```
    Retrieve the current "fine" spacing between slices.
    
    Returns:
    
    float Current "fine" spacing between slices.
  - getSurfaceDialog
```
public JPanelSurface getSurfaceDialog()
```
    Return surfacePanel from parent frame.
    
    Returns:
    
    surfacePanel Surface Dialog box.
  - getSurfaceTexture
```
public JPanelSurfaceTexture getSurfaceTexture()
```
    Returns the surface texture panel interface.
    
    Returns:
    
    surface texture panel.
  - getSurfaceTexturePanel
```
public javax.swing.JPanel getSurfaceTexturePanel()
```
    Returns the surface texture panel mainPanel interface.
    
    Returns:
    
    surface texture mainPanel.
  - getViewDialog
```
public JPanelView getViewDialog()
```
    Return the viewPanel from parent frame.
    
    Returns:
    
    viewPanel View Dialog box.
  - getVolOpacityPanel
```
public JPanelVolumeOpacity getVolOpacityPanel()
```
    Return volume opacity control Dialog from parent frame.
    
    Returns:
    
    volOpacityPanel volume opacity dialog box.
  - getVolRenderBG
```
public javax.media.j3d.BranchGroup getVolRenderBG()
```
    Return volume render Branch Group.
    
    Returns:
    
    volRenderBG volume render branch group.
  - getVolRenderOG
```
public javax.media.j3d.OrderedGroup getVolRenderOG()
```
    Return volume render Order Group.
    
    Returns:
    
    volRenderOG volume render order group.
  - getVolumeTexture
```
public VolumeTexture getVolumeTexture()
```
    Return texture, the VolumeTexture member variable.
    
    Returns:
    
    DOCUMENT ME!
  - getVolumeTextureCopy
```
public javax.media.j3d.Group getVolumeTextureCopy(int iView)
```
    Returns the left of right eye copy of the NodeVolumeTextureRender:
    
    Parameters:
    
    iView - determines which view to return, 0 for left and 1 for right:
    
    Returns:
    
    the NodeVolumeTextureRender for displaying the volume texture in the stereo window.
  - getResolutions
```
public float[] getResolutions()
```
    Returns the ModelImage resolutions.
    
    Returns:
    
    ModelImage resolutions
  - hideBoxFrame
```
public void hideBoxFrame()
```
    Makes the box frame invisible.
  - invokeClipping
```
public void invokeClipping()
```
    Enable the six clipping planes at a time.
  - isVolViewMode
```
public boolean isVolViewMode()
```
    Check is volume view frame or not.
    
    Returns:
    
    boolean true means mode on, false means mode off.
  - reConfigureVolumeFrame
```
public void reConfigureVolumeFrame()
```
    Constructs main frame structures for 3 image planes. Makes the LUT if necessary, then sets up the buffer arrays appropriately and calls the constructors for the three image planes. Used by the switch between aligned volume texture rendering and the volume texture rendering. Changed to public to allow updating after the volume is sculpted.
  - removeBoxSlice
```
public void removeBoxSlice(int orientation)
```
    Detaches the slice frame on the slice for the given orientation.
    
    Parameters:
    
    orientation - the slice to add: AXIAL, CORONAL, or SAGITTAL
  - removeCubicControl
```
public void removeCubicControl()
```
    Detach cubic control branch group.
  - resetAxisX
```
public void resetAxisX()
```
    Overrides the parent resetImage method. This method reset the surface volume to the original position.
    
    Overrides:
    
    resetAxisX in class RenderViewBase
  - resetAxisY
```
public void resetAxisY()
```
    Overrides the parent resetImage method. This method reset the surface volume to the original position.
    
    Overrides:
    
    resetAxisY in class RenderViewBase
  - resetImage
```
public void resetImage()
```
    Overrides the parent resetImage method. This method reset the surface volume to the original position.
    
    Overrides:
    
    resetImage in class RenderViewBase
  - rotateImage
```
public void rotateImage()
```
    Overrides the rotateImage to rotate the surface volume.
    
    Overrides:
    
    rotateImage in class RenderViewBase
  - saveCropVolume
```
public void saveCropVolume()
```
    Save crop region with the clipped volume.
  - setAlphaBlend
```
public void setAlphaBlend(int value)
```
    Sets the alpha blending of parameter for two image displays.
    
    Specified by:
    
    setAlphaBlend in class RenderViewBase
    
    Parameters:
    
    value - Amount [0,100] that is the percentage of Image A to be displayed.
  - setCompositeMode
```
public void setCompositeMode()
```
    Set the texture renderer to render in composite mode.
  - setDisplayMode3D
```
public void setDisplayMode3D(boolean flag)
```
    Hack. Set the update 3D texture volume win-level flag.
    
    Parameters:
    
    flag - true update 3D texture volume with win-level, false not update.
  - setGUI
```
public void setGUI(java.lang.Object scene)
```
    Sets the GUI components to their proper state before the action is dispatched from the player.
    
    Specified by:
    
    setGUI in class RenderViewBase
    
    Parameters:
    
    scene - The state of the scene.
  - setLightingMode
```
public void setLightingMode()
```
    Set the texture render to render in lighting mode.
  - setLUTa
```
public void setLUTa(ModelLUT LUT)
```
    Accessor that sets the LUT for image A.
    
    Parameters:
    
    LUT - The LUT.
  - setLUTb
```
public void setLUTb(ModelLUT LUT)
```
    Accessor that sets the LUT for image B.
    
    Parameters:
    
    LUT - The LUT
  - setMaterialShininess
```
public void setMaterialShininess(float value)
```
    Set the texture material shininess value.
    
    Parameters:
    
    value - shininess value.
  - setMouseMode
```
public void setMouseMode(int mode)
```
    Sets the mouse pointer mode - standard or fly - in the view dialog.
    
    Parameters:
    
    mode - Mode to set to.
  - setMouseRotateEnable
```
public void setMouseRotateEnable(boolean bEnable)
```
    Allow disabling or enabling mouse rotation:
    
    Parameters:
    
    bEnable - DOCUMENT ME!
  - setParallelRotation
```
public void setParallelRotation(boolean flag)
```
    Set the parallel rotation flag from the viewJFrameVolumeView.
    
    Parameters:
    
    flag - true set all the renderer to parallel rotation, false parallel rotation mode off.
  - setProbeTG
```
public void setProbeTG(javax.media.j3d.Transform3D kTransform,
                       boolean bTwist)
```
    Sets the Transform3D for the slices based on the Probe Transform. To allow rotation about the probe position, and not just the center of the slices, the probe translation and rotation protions of the matrix are separated. First the center of the slice is translated from the probe position to the origin, then rotated, then translated back to the probe position. The three transformations are concatenated into one Transform3D, which is used to display the slices, boxes, and to sample the ModelImage on the diagonal:
    
    Parameters:
    
    kTransform - current probe transform
    
    bTwist - true if there is twist about the probe axis
  - setRayBasedRender
```
public void setRayBasedRender(VolumeRenderer _rayBasedRender)
```
    Set the reference to ray based renderer, raycast renderer or shear warp renderer. This method set the clipping dialog to control the both the 3D texture renderer and raycast based renderer.
    
    Parameters:
    
    _rayBasedRender - VolumeRenderer reference
  - setRenderPerspective
```
public void setRenderPerspective(boolean bEnable)
```
    Enable perspective projection rendering; otherwise use orthographic projection.
    
    Parameters:
    
    bEnable - true to enable perspective projection
  - setRGBTA
```
public void setRGBTA(ModelRGB RGBT)
```
    Sets the RGB table for image A.
    
    Specified by:
    
    setRGBTA in class RenderViewBase
    
    Parameters:
    
    RGBT - New RGB table for image A.
  - setRGBTB
```
public void setRGBTB(ModelRGB RGBT)
```
    Sets the RGB table for image B.
    
    Specified by:
    
    setRGBTB in class RenderViewBase
    
    Parameters:
    
    RGBT - New RGB table for image B.
  - setSegmentationImage
```
public void setSegmentationImage(ModelImage img)
```
    Set the image which we can check to see if the probe is hitting anything important (such as vessels, etc).
    
    Parameters:
    
    img - segmentation image
  - setCenter
```
public void setCenter(javax.vecmath.Vector3f center)
```
    Sets the values for JPanelSlices, based on the positions in the PlaneRender class for the AXIAL, CORONAL, and SAGITTAL views.
    
    Parameters:
    
    center - the three slider values in File Coordinates
  - setSlice
```
public void setSlice(int slice)
```
    Does nothing but must instantiate for this to implements ViewImageUpdateInterface.
    
    Specified by:
    
    setSlice in interface ViewImageUpdateInterface
    
    Parameters:
    
    slice - DOCUMENT ME!
  - setSliceSpacingCoarse
```
public void setSliceSpacingCoarse(float fSpacing)
```
    Set the desired "coarse" spacing between slices.
    
    Parameters:
    
    fSpacing - float Desired "coarse" spacing between slices.
  - setSliceSpacingFine
```
public void setSliceSpacingFine(float fSpacing)
```
    Set the desired "fine" spacing between slices.
    
    Parameters:
    
    fSpacing - float Desired "fine" spacing between slices.
  - setSliceColor
```
public void setSliceColor(java.awt.Color color,
                          int orientation)
```
    Sets the color of the x slice frame.
    
    Parameters:
    
    color - Color to set to.
  - setTimeSlice
```
public void setTimeSlice(int slice)
```
    Sets the time slice to be displayed and changes the image planes displayed.
    
    Specified by:
    
    setTimeSlice in interface ViewImageUpdateInterface
    
    Parameters:
    
    slice - Indicates image time-slice (4th dimension) to be displayed.
  - setViewTextureAligned
```
public void setViewTextureAligned(boolean flag)
```
    Switch between the volume texture mode and the regular volume texture mode.
    
    Parameters:
    
    flag - texture aligned view enabled or not
  - setVolumeDisplayMode
```
public void setVolumeDisplayMode(boolean volDisplayMode)
```
    Accessor that sets the volumeDisplayMode flag. If true image is displayed as a volume. If false image is displayed as three orthogonal planes.
    
    Parameters:
    
    volDisplayMode - if true image is displayed as a volume ( 3D texture or 2D array Texture).
  - setVolView
```
public void setVolView(boolean flag)
```
    Set the volume view mode to true from the ViewJFrameVolumeView During mouse recorder displaying, the flag control the updating of the opacity histogram.
    
    Parameters:
    
    flag - true means mode on, false means mode off.
  - showBoxFrame
```
public void showBoxFrame()
```
    Makes the box frame visible.
  - showBoxSlice
```
public void showBoxSlice(int orientation)
```
    Makes the box slice for the given orientation visible.
    
    Parameters:
    
    orientation - : AXIAL, CORONAL, or SAGITTAL
  - stateChanged
```
public void stateChanged(javax.swing.event.ChangeEvent e)
```
    Sets how the image plane should be displayed depending on value of slider.
    
    Specified by:
    
    stateChanged in interface javax.swing.event.ChangeListener
    
    Parameters:
    
    e - Event that triggered this function.
  - switchToSliceView
```
public void switchToSliceView(boolean firstTime)
```
    Perform some actions required when switching to the slice renderer.
    
    Parameters:
    
    firstTime - perform special actions required when switching for the first time
  - switchToVolView
```
public void switchToVolView(boolean firstTime)
```
    Perform some actions required when switching to the volume renderer.
    
    Parameters:
    
    firstTime - perform special actions required when switching for the first time
  - transformChanged
```
public void transformChanged(int type,
                             javax.media.j3d.Transform3D transform)
```
    Tells the mouse dialog that the transform has changed. Does not use the type parameter.
    
    Specified by:
    
    transformChanged in interface com.sun.j3d.utils.behaviors.mouse.MouseBehaviorCallback
    
    Parameters:
    
    type - Type of transform.
    
    transform - Transform that was changed to.
  - transformUpdate
```
public void transformUpdate(int type,
                            javax.media.j3d.Transform3D transform)
```
    The raybased renderer invokes this method when a mouse release event occurs.
    
    Parameters:
    
    type - Type of transform.
    
    transform - Transform that was changed to.
  - undoCropVolume
```
public void undoCropVolume()
```
    Undo crop region with the clipped volume.
  - update3DTriplanar
```
public boolean update3DTriplanar(ModelLUT LUTa,
                                 ModelLUT LUTb,
                                 boolean forceShow)
```
    This methods calls the componentImage's update method to redraw the screen.
    
    Parameters:
    
    LUTa - LUT used to update imageA.
    
    LUTb - LUT used to update imageB.
    
    forceShow - Forces show to reimport image and calculate java image.
    
    Returns:
    
    Confirms successful update.
  - transformBoxSlices
```
private void transformBoxSlices(javax.media.j3d.Transform3D kTransform)
```
    transform the points used to render the triSliceImages textures.
    
    Parameters:
    
    kTransform - the Transform3D used to rotate the boxes.
  - ScreenToModel
```
private void ScreenToModel(javax.vecmath.Vector3f screen,
                           javax.vecmath.Vector3f model)
```
    Translate from normalized plane coordinates to Model coordinates:
    
    Parameters:
    
    screen - the input point to be transformed from normalized plane coordinates
    
    model - the output point in Model coordinates
  - ModelToScreen
```
public void ModelToScreen(javax.vecmath.Vector3f model,
                          javax.vecmath.Vector3f screen)
```
    Translate from Model coordinates to normalized plane coordinates:
    
    Parameters:
    
    model - the input point in Model coordinates
    
    screen - the output point in normalized plane coordinates
  - getBoxSliceInScreen
```
private void getBoxSliceInScreen(javax.vecmath.Vector3f[] screenBoxPoints,
                                 int[] boxSliceConstants)
```
    sets up the values for the ViewJComponentBoxSlice array. Reorders the three boxSlice (x,y,z) coordinates and mode value into local ModelCoordinates.
    
    Parameters:
    
    Vector3f - [] the reordered (x,y,z) coordinates for each boxSlice remapped into ModelCoordinates.
    
    boxSliceConstants - the reordered mode value (X_SLICE, Y_SLICE, Z_SLICE) remapped into ModelCoordinates
  - updateBoxSlicePos
```
public void updateBoxSlicePos(boolean bParentUpdate)
```
    Update the X, Y, Z box frame positions.
    
    Parameters:
    
    bParentUpdate - if true, update the positions in the ParentFrame.
  - updateBoxSlices
```
public void updateBoxSlices()
```
    Sets new frame around slice x based on the new position.
  - updateCubicTransform
```
public void updateCubicTransform(double[] mat)
```
    Update the transform3D for the cubic.
    
    Parameters:
    
    transform - Transform3D
  - updateCubicTransform
```
public void updateCubicTransform(javax.media.j3d.Transform3D transform)
```
    Update the transform3D for the cubic.
    
    Parameters:
    
    transform - Transform3D
  - updateData
```
public void updateData()
```
    Called when the underlying data has changed, due to sculpting. Calls the ViewJFrameVolumeView updateSliceData function to update the data in the slices.
  - updateImageExtents
```
public boolean updateImageExtents()
```
    This methods calls the componentImage's REPAINT method to redraw the screen. The extents on this image have changed, so the extents need to be read in again and menus, panes and slide bars adjusted accordingly.
    
    Specified by:
    
    updateImageExtents in interface ViewImageUpdateInterface
    
    Returns:
    
    DOCUMENT ME!
  - updateImageFromRotation
```
public void updateImageFromRotation()
```
    Build a image with the current rotational transformation matrix. Step.1 convert the java3D transform matrix into a quaternion component. Step.2 convert the quaternion into image( our world ) coordinate system. Step.3 convert the quaternion into a rotatin matrix. Quaternion q ( w, x, y, z ): rotation of w around the vector ( x, y, z ); Convert the quaternion into a rotation matrix. / \ | 1-2*y^2-2*z^2 2*x*y-2*w*z 2*x*z+2*w*y | | 2*xy+2*w*z 1-2*x^2-2*z^2 2*y*z-2*w*x | | 2*x*z-2*w*y 2*y*z+2*w*x 1-2*x^2-2*y^2 | \ / Step.4 Calling the transform algorithm to extract the image.
  - updateImages
```
public boolean updateImages()
```
    This methods calls the componentImage's update method to redraw the screen - fastest of the three update methods.
    
    Specified by:
    
    updateImages in interface ViewImageUpdateInterface
    
    Returns:
    
    Confirms successful update.
  - updateImages
```
public boolean updateImages(boolean flag)
```
    This methods calls the componentImage's update method to redraw the screen. Without LUT changes.
    
    Specified by:
    
    updateImages in interface ViewImageUpdateInterface
    
    Parameters:
    
    flag - forces show to re import image and calc. java image
    
    Returns:
    
    boolean confirming successful update
  - updateImages
```
public boolean updateImages(ModelLUT LUTa,
                            ModelLUT LUTb,
                            boolean forceShow,
                            int interpMode)
```
    This methods calls the componentImage's update method to redraw the screen. Without LUT changes.
    
    Specified by:
    
    updateImages in interface ViewImageUpdateInterface
    
    Parameters:
    
    LUTa - DOCUMENT ME!
    
    LUTb - DOCUMENT ME!
    
    forceShow - Forces show to reimport image and calculate java image.
    
    interpMode - DOCUMENT ME!
    
    Returns:
    
    Confirms successful update.
  - updateLighting
```
public void updateLighting()
```
    This method is normally called by JPanelLights when a light bulb property changes. It is up to this instance to decide how to update the rendering.
  - updateOpacityOfOthrogPlanes
```
public void updateOpacityOfOthrogPlanes(int opX,
                                        int opY,
                                        int opZ)
```
    Updates the 3 orthogonal 2D texture maps' opacities.
    
    Parameters:
    
    opX - the opacity of the x plane, range [0,100] and -1 if no updating is required
    
    opY - the opacity of the y plane, range [0,100] and -1 if no updating is required
    
    opZ - the opacity of the z plane, range [0,100] and -1 if no updating is required
  - updateProbe
```
public void updateProbe(boolean forceShow,
                        boolean bInterpolate,
                        boolean bReset)
```
    Updates the slice textures based on the Probe position and rotation angle. The ModelImage data is sampled along the diagonal, not axis-aligned. bInterpolate indicates whether to use nearest-neighbors or to interpolate the data.
    
    Parameters:
    
    forceShow - Forces triSliceImages[i].show to re-calculate the image texture.
    
    bInterpolate - uses nearest-neighbors when false, interpolates data when true
    
    bReset - when true indicates that the probe navigation has been reset and the slice bounding boxes should be displayed, when false the probe is no axis-aligned and the slice bounding boxes are not displayed
  - updateProbePos
```
public void updateProbePos()
```
    Not used now. Might be used later on.
  - updateRaycastRender
```
public void updateRaycastRender()
```
    Update the raycast based renderer. JPanelSurface mouse release event invokes this method call.
  - updateShininess
```
public void updateShininess(float value)
```
    Update the shininess from the JPanelLights.
    
    Parameters:
    
    value - shininess value.
  - updateTransform
```
public void updateTransform()
```
    Tells the mouse dialog that the transform has changed. Does not use the type parameter.
    
    Parameters:
    
    transform - Transform that was changed to.
  - updateVolume
```
public boolean updateVolume(ModelLUT LUTa,
                            ModelLUT LUTb,
                            boolean forceShow)
```
    This methods calls the componentImage's update method to redraw the screen.
    
    Parameters:
    
    LUTa - LUT used to update imageA.
    
    LUTb - LUT used to update imageB.
    
    forceShow - Forces show to reimport image and calculate java image.
    
    Returns:
    
    Confirms successful update.
  - useSliceSpacingCoarse
```
public void useSliceSpacingCoarse()
```
    Select the "coarse" slice sampling for rendering.
  - useSliceSpacingFine
```
public void useSliceSpacingFine()
```
    Retrieves whether the "fine" slice sampling is currently selected.
  - whichTissue
```
public int whichTissue(float x,
                       float y,
                       float z)
```
    Check the given voxel belong to which segmentation.
    
    Parameters:
    
    x - float given voxel x coordinate
    
    y - float given voxel y coordinate
    
    z - float given voxel z coordinate
    
    Returns:
    
    int segmentation component type
  - buildCubicBox
```
private com.sun.j3d.utils.geometry.Box buildCubicBox()
```
    Create the rotation control cubic box.
    
    Returns:
    
    A cube representing the image orientation, with labels painted on the cube faces showing which axis corresponds to which axis in patient coordinates.
  - buildCubicBranch
```
private void buildCubicBranch()
```
    Build the cubic branch under the objRootBG.
  - configureSliceFrame
```
private void configureSliceFrame()
```
    Constructs main frame structures for 3 image planes. Makes the LUT if necessary, then sets up the buffer arrays appropriately and calls the constructors for the three image planes.
  - generateRFACoordMaps
```
private void generateRFACoordMaps()
```
    Generates the texture coord map vectors for the three orthogonal slices.
  - generateRFACoordMaps
```
private javax.vecmath.Vector4f generateRFACoordMaps(int orientation,
                                                    int texCoord)
```
    create texture coordmaps for the texture-mapped planes displaying the triSliceImages.
    
    Parameters:
    
    orientation - the orientation of the plane for which the texture coordinates are generated (AXIAL, CORONAL, or SAGITTAL)
    
    texCoord - the dimension along which the texture coordinate varies
  - createImageSceneGraph
```
private void createImageSceneGraph()
```
    Creates the scene graph, made up of a branch group parent, a transform group under that which applies mouse behavior and lights to the scene, and three branch groups under the transform group for each of the three image planes. The surfaces that can be added would be children of the transform group. Each image plane has a transform group associated with it and beneath that, a box shape where the texture maps are applied. The shape is what is actually displayed.
  - setupEye
```
private void setupEye()
```
    Set up the center point of the red line boxframe.
  - updateTextureVolumeRender
```
private void updateTextureVolumeRender()
```
    Determine the current viewing transformation and pass it to the texture volume renderer so that it can update itself.
  - updateViewScreenScale
```
private void updateViewScreenScale(javax.media.j3d.Transform3D kTransform)
```
    This function calculates the scale factor for zooming in parallel projection. The scenario is to calculate the distance between the origin boxframe center and tranformed boxframe center. This distance is used to compute the screen scale factor.
    
    Parameters:
    
    kTransform - The tranformation matrix from tranformChanged().
  - updateParent
```
public void updateParent()
```
  - keyPressed
```
public void keyPressed(java.awt.event.KeyEvent arg0)
```
    Specified by:
    
    keyPressed in interface java.awt.event.KeyListener
  - keyReleased
```
public void keyReleased(java.awt.event.KeyEvent arg0)
```
    Specified by:
    
    keyReleased in interface java.awt.event.KeyListener
  - keyTyped
```
public void keyTyped(java.awt.event.KeyEvent arg0)
```
    Specified by:
    
    keyTyped in interface java.awt.event.KeyListener
  - propertyChange
```
public void propertyChange(java.beans.PropertyChangeEvent arg0)
```
    Specified by:
    
    propertyChange in interface java.beans.PropertyChangeListener

Class SurfaceRender

Nested Class Summary

Nested classes/interfaces inherited from class gov.nih.mipav.view.renderer.J3D.RenderViewBase

Nested classes/interfaces inherited from class java.awt.Canvas

Nested classes/interfaces inherited from class java.awt.Component

Field Summary

Fields inherited from class gov.nih.mipav.view.renderer.J3D.RenderViewBase

Fields inherited from class gov.nih.mipav.view.renderer.J3D.VolumeCanvas3D

Fields inherited from class javax.media.j3d.Canvas3D

Fields inherited from class java.awt.Component

Fields inherited from interface java.awt.image.ImageObserver

Fields inherited from interface com.sun.j3d.utils.behaviors.mouse.MouseBehaviorCallback

Constructor Summary

Method Summary

Methods inherited from class gov.nih.mipav.view.renderer.J3D.RenderViewBase

Methods inherited from class gov.nih.mipav.view.renderer.J3D.VolumeCanvas3D

Methods inherited from class javax.media.j3d.Canvas3D

Methods inherited from class java.awt.Canvas

Methods inherited from class java.awt.Component

Methods inherited from class java.lang.Object

Field Detail

serialVersionUID

ARTERIAL_SEG

VEINOUS_SEG

VASCULATURE_SEG

TUMOR_SEG

BONE_SEG

ENTRY_POINT

isViewTextureAligned

rayBasedRender

isTriPlanarVolView

boxPanel

boxSlices

boxSliceVertices

clipPanel

triSliceImages

triSliceGeometry

componentVolImage

cubicBehaviorBG

cubicBG

cubicRotate

cubicTG

currentTransform

currentTransformType

first6ClipPlane

firstClipArbi

geodesicPanel

imageA

imageB

imageVolBufferA

imageVolBufferB

isEntryPoint

m_bRenderModeLighting

m_dOriginalScreenScale

m_kObjBoxSliceProbe_TG

m_kObjPlaneProbe_TG

m_kProbeTransform

m_kSoftwareLightSet

m_kSoftwareMaterial

mousePanel

mouseRotateBehavior

mouseTranslateBehavior

mouseZoomBehavior

myEyePoint

objBoxSlices_BG

objTransSlices_TG

objPlane_BG

parallelRotation

parallelScaleT3D

parent

probePanel

resols

rotationCount

sculptorPanel

segmentationImage

slicePanel

surfacePanel

surfaceTexturePanel

switchGroup

rotationAlpha