java.lang.Object
- java.awt.Component
- - java.awt.Container
  - - javax.swing.JComponent
    - - javax.swing.JPanel
      - gov.nih.mipav.view.renderer.JPanelRendererBase
        
        gov.nih.mipav.view.renderer.J3D.JPanelRendererJ3D
        
        gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

All Implemented Interfaces:

java.awt.event.ActionListener, java.awt.event.FocusListener, java.awt.event.ItemListener, java.awt.event.KeyListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, java.util.EventListener, javax.accessibility.Accessible, javax.swing.event.ChangeListener, javax.swing.event.ListSelectionListener
```
public class JPanelProbe
extends JPanelRendererJ3D
implements javax.swing.event.ChangeListener, javax.swing.event.ListSelectionListener
```
Dialog to turn slices bounding box of surface renderer on and off, and to change the color of the frame. This dialog also control the X, Y, Z slices movements.

Author:

Ruida Cheng

See Also:

Serialized Form

Nested Class Summary

Nested Classes
Modifier and Type	Class	Description
`(package private) class`	`JPanelProbe.CancelListener`	Cancel the color dialog, change nothing.
`class`	`JPanelProbe.DrawingPane`	Helper class for resizing.
`(package private) class`	`JPanelProbe.OkColorListener`	Pick up the selected color and call method to change the surface color.

Nested classes/interfaces inherited from class javax.swing.JPanel
javax.swing.JPanel.AccessibleJPanel

Nested classes/interfaces inherited from class javax.swing.JComponent
javax.swing.JComponent.AccessibleJComponent

Nested classes/interfaces inherited from class java.awt.Container
java.awt.Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component
java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

Fields
Modifier and Type	Field	Description
`private javax.swing.JButton`	`bonePresetButton`	DOCUMENT ME!
`private javax.swing.JCheckBox`	`burnBackFaceCB`	burning point back face culling check box.
`private BurnBase`	`burnBase`	Burn base reference.
`private javax.swing.JCheckBox`	`burnClipCB`	burning point clipping check box.
`private int`	`burnIndex`	Current burning point index being hightlighted.
`private javax.vecmath.Vector3f`	`burningPtTransVector`	Burning point coordinate vector in world coordinate system.
`private javax.swing.JList`	`burnList`	Burn list that hold the burning point names.
`private javax.swing.JButton`	`calcButton`	Calculat button.
`private javax.vecmath.Point3f`	`center`	Burning point coordinate.
`private javax.swing.JLabel`	`centerLabel`	burning point center label.
`private boolean`	`clipping`	Burning surface being clipped or not.
`private javax.swing.JButton`	`colorButton`	Burning point color button.
`private ViewJColorChooser`	`colorChooser`	Color chooser when the user changes the color of the surface.
`private javax.swing.JLabel`	`colorLabel`	Burning point color label.
`private boolean`	`culling`	Burning surface being culled ( back face bulling ) or not.
`private int`	`cursorMode`	curreent cursor nevigation mode.
`private javax.swing.JLabel`	`diffVolumeLabel`	Volume difference label for the current treatment.
`private javax.swing.JTextField`	`diffVolumeText`	Volume difference text.
`private JPanelProbe.DrawingPane`	`drawingPane`	Associate structure of the scroll pane to resize the panel properly.
`private javax.vecmath.Vector3f`	`endPtTransVector`	End point coordinate vector in the world coordinate system.
`private javax.swing.JLabel`	`entryPointLabel`	entry point label.
`private javax.swing.JPanel`	`entryPointPanel`	Panel that hold the entry point roation check box.
`private javax.swing.JCheckBox`	`entryPointRotationCB`	entry point rotation check box.
`private javax.swing.JButton`	`liverPresetButton`	Liver segmentation preset opacity transform function control button.
`private javax.swing.JButton`	`loadVisualizationButton`	Load button for the opacity transform function.
`private javax.swing.JLabel`	`m_kProbeTwistLabel`	DOCUMENT ME!
`private javax.swing.JSlider`	`m_kProbeTwistSlider`	Rotation/Twist around the direction of the probe:.
`private float`	`maxBox`	The maximum of the fram box values.
`private static int`	`NONE`	cursor default nevigation mode.
`private TreatmentInformation`	`noTargetTreatment`	Treatment information to be used if the user wants to burn without any target surface.
`private float`	`opacity`	Burning point opacity.
`private javax.swing.JLabel`	`opacityLabel`	The opacity slider label.
`private javax.swing.JSlider`	`opacitySlider`	burning point surface opacity slider.
`private javax.swing.JLabel[]`	`opacitySliderLabels`	burning point surface opacity slider label.
`private ViewJFrameVolumeView`	`parentFrame`	Volume view frame work reference.
`private Probe`	`probe`	Probe reference.
`private javax.swing.JList`	`probeList`	Probes list.
`private static int`	`PROBEMOVE`	cursor probe nevigation mode.
`private javax.swing.JToggleButton`	`probeResetButton`	Reset probe nevigation mode.
`private javax.swing.JToggleButton`	`probeTargetButton`	Control the tri-planar probe nevigation mode.
`private javax.swing.JLabel`	`radiusLabel`	burning point diameter label.
`private javax.swing.JLabel`	`resultLabel`	result label to show the bone, vasculature detection information message.
`private javax.swing.JButton`	`saveVisualizationButton`	Save button for the opacity tranform function.
`private javax.swing.JScrollPane`	`scroller`	Scroll pane that control the resizing of the panel.
`private javax.swing.JLabel`	`semiXLabel`	burning point semi axis X label.
`private javax.swing.JTextField`	`semiXText`	burning point semi axis X text field.
`private javax.swing.JLabel`	`semiYLabel`	burning point semi axis Y label.
`private javax.swing.JTextField`	`semiYText`	burning point semi axis Y text field.
`private javax.swing.JLabel`	`semiZLabel`	burning point semi axis Z label.
`private javax.swing.JTextField`	`semiZText`	burning point semi axis Z text field.
`private static long`	`serialVersionUID`	Use serialVersionUID for interoperability.
`private boolean`	`showBurnLabels`	Flag indicates the show burning text label or not.
`private javax.swing.JCheckBox`	`showBurnLabelsCB`	Show the burning text label checkbox.
`private javax.swing.JButton`	`skinPresetButton`	Skin segmentation preset opacity transform function control button.
`private javax.swing.JSlider`	`sliderX`	The probe X slider that control the probe push and pull movements.
`private boolean`	`snapToTarget`	Whether to snap to center of a target surface when it is selected; defaults to true.
`private javax.swing.JCheckBox`	`snapToTargetCB`	Checkbox indicating whether to snap to center of a target surface when it is selected.
`private javax.vecmath.Vector3f`	`startPtTransVector`	Start point ( invisible ) coordinate vector in world coordinate system.
`private javax.swing.JTabbedPane`	`tabbedPane`	The main tabbed pane in the volume view frame.
`private javax.swing.JPanel`	`tabPanel`	The main tab contrl panel.
`private javax.swing.JList`	`targetList`	Surface target list (tumors).
`private javax.swing.JTextField`	`targetVolumeText`	Label containing the volume of the current target surface.
`private javax.swing.JTextField`	`targetXText`	X label for the center coordinate of the current target surface.
`private javax.swing.JTextField`	`targetYText`	Y label for the center coordinate of the current target surface.
`private javax.swing.JTextField`	`targetZText`	Z label for the center coordinate of the current target surface.
`private javax.swing.JComboBox`	`tipLengthCB`	Combo box for indicating the length of the probe tip.
`private javax.swing.JToolBar`	`toolBar`	Tool bar.
`private javax.swing.JLabel`	`totalVolumeLabel`	Burning points total volume label.
`private javax.swing.JTextField`	`totalVolumeText`	Burning point total volume text.
`private javax.swing.JToggleButton`	`traverseButton`	Control the tri-planar default view nevigation mode.
`private java.util.Vector<TreatmentInformation>`	`treatmentVector`	List of treatment sets.
`private javax.swing.JLabel`	`volumeLabel`	buring point volume label.
`private javax.swing.JTextField`	`volumeText`	burning pont volume text box.
`private float`	`xBox`	Parent frame box value.
`private javax.swing.JLabel`	`xLabel`	burning point X, Y, Z coordinate label.
`private javax.swing.JLabel`	`xLabelEntry`	entry point X, Y, Z coordinate label.
`private float`	`xRes`	The resolutions of the (possibly respampled) image (the one shown in the renderer).
`private javax.swing.JSlider`	`xSliderS`	slider that controls the probe moves along the x direction.
`private javax.swing.JTextField`	`xText`	burning point X, Y, Z coordinate text box.
`private javax.swing.JTextField`	`xTextEntry`	entry point X, Y, Z coordinate text box.
`private float`	`yBox`	Parent frame box value.
`private javax.swing.JLabel`	`yLabel`	burning point X, Y, Z coordinate label.
`private javax.swing.JLabel`	`yLabelEntry`	entry point X, Y, Z coordinate label.
`private float`	`yRes`	The resolutions of the (possibly respampled) image (the one shown in the renderer).
`private javax.swing.JSlider`	`ySliderS`	slider that controls the probe moves along the y direction.
`private javax.swing.JTextField`	`yText`	burning point X, Y, Z coordinate text box.
`private javax.swing.JTextField`	`yTextEntry`	entry point X, Y, Z coordinate text box.
`private float`	`zBox`	Parent frame box value.
`private javax.swing.JLabel`	`zLabel`	burning point X, Y, Z coordinate label.
`private javax.swing.JLabel`	`zLabelEntry`	entry point X, Y, Z coordinate label.
`private float`	`zRes`	The resolutions of the (possibly respampled) image (the one shown in the renderer).
`private javax.swing.JSlider`	`zSliderS`	slider that controls the probe moves along the z direction.
`private javax.swing.JTextField`	`zText`	burning point X, Y, Z coordinate text box.
`private javax.swing.JTextField`	`zTextEntry`	entry point X, Y, Z coordinate text box.

Fields inherited from class gov.nih.mipav.view.renderer.J3D.JPanelRendererJ3D
rayBasedRender, renderBase

Fields inherited from class gov.nih.mipav.view.renderer.JPanelRendererBase
applyButton, cancelButton, cancelFlag, closeButton, helpButton, isActiveImage, mainPanel, NEW, OKButton, REPLACE, runInSeparateThread, serif12, serif12B

Fields inherited from class javax.swing.JComponent
listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Component
accessibleContext, BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver
ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

Constructors
Constructor	Description
`JPanelProbe(SurfaceRender parent, ViewJFrameBase _parentFrame, float xBox, float yBox, float zBox)`	Constructor to initialize the probe control panel.

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`actionPerformed(java.awt.event.ActionEvent event)`	Action perform event function that handle all the commands in the probe panel.
`private void`	`buildBurnPackingPanel()`	Build the tab panel containing ablation (sphere/ellipsoid) packing parameters, etc.
`private void`	`buildBurnVisPanel()`	Build the tab containing the color, opac, picking, labels, etc for burns.
`private void`	`buildProbeModelPanel()`	Build the tab which allows the user to change the currently used probe model.
`private void`	`buildProbePlacementPanel()`	Build the tab with controls / info used in probe placement before a burn.
`private javax.swing.JPanel`	`buildProbeSlider()`	Setup the probe moving control panel that include x, y, z moving sliders.
`private void`	`buildTabbedPanel()`	Build the four tabbed panes, probe control pane, burn control pane, burn parameter control pane, and demo pane.
`private javax.swing.JPanel`	`buildTargetListPanel()`	Build the target surface (tumor) control panel.
`private void`	`buildTargetPanel()`	Build the tab which allows the user to pick the current tumor to target, to load/remove tumor surfaces and show tumor position and volume info.
`private void`	`buildToolBar()`	Build the probe toolbar control.
`private void`	`buildTreatmentPanel()`	Build the tab containing ablation treatment information, including a list of burns; burn removal, position and volume; comparison of current tumor vs current set of burns.
`private static javax.swing.JLabel`	`createBoldLabel(java.lang.String title)`	Creates a label in the proper (bold) font and color.
`private static javax.swing.JLabel`	`createLabel(java.lang.String title)`	Creates a label in the proper font and color.
`void`	`detectTissue()`	Detect the body tissue component.
`void`	`dispose()`	Dispose memory.
`private void`	`enableBurnTreatmentComponents(boolean flag)`	Enable or disable the components on the target treatment panel.
`private void`	`enableBurnVisComponents(boolean flag)`	Enable or disable the components on the burn visualization panel.
`void`	`enableProbeBehavior(boolean flag)`	Enable probe mouse behavior branch group.
`BurnBase`	`getBurnBase()`	Get the burn base reference inside the probe control panel.
`boolean`	`getBurnLabelFlag()`	Get the show burning point label's flag.
`javax.vecmath.Vector3f`	`getBurnPoint()`	Get the burning point world coordinate.
`javax.media.j3d.BranchGroup`	`getBurnRootParentBG()`	Get the burn root branch group.
`private void`	`getColorChange(java.awt.Color color)`	This is called when the user chooses a new color for the surface.
`SurfaceAttributes`	`getCurSurface()`	Get the current highlight surface.
`TreatmentInformation`	`getCurTreatment()`	Get the treatment info that matches the currently selected target surface.
`javax.vecmath.Vector3f`	`getEndPoint()`	Get the end point world coordinate vector.
`javax.vecmath.Point3f`	`getEntryPoint()`	Get the entry ponit world coordinate.
`javax.swing.JPanel`	`getMainPanel()`	Get the main control panel.
`Probe`	`getProbeBase()`	Get the probe base reference inside the burning control panel.
`javax.media.j3d.BranchGroup`	`getProbesRootBG()`	Return the root to the probes branches.
`javax.vecmath.Vector3f`	`getStartPoint()`	Get the start point world coordinate vector.
`SurfaceAttributes`	`getTargetSurface()`	Return the currently targeted surface.
`private TreatmentInformation`	`getTreatmentInfo(int index)`	Get information about a treatment.
`private void`	`init()`	Initialize the whole probe panel control layout.
`boolean`	`isSnapToTarget()`	Return whether the user wants to snap to the treatment target surface.
`private ModelImage`	`loadImage()`	Ask the user for an image to load and return it.
`void`	`loadVisualizationDataFrom(boolean loadAll, java.lang.String filename, java.lang.String dirName, boolean quietMode)`	This method loads the LUT and opacity transfer function for the active image.
`private void`	`loadVisualizationSettings(TransferFunction lut, TransferFunction opac)`	Loads visualization settings for this image.
`private void`	`removeAllBurn()`	Remove all the burning point geometry shapes in the volume.
`private void`	`removeBurn()`	The action taken when the Remove button is clicked in the list box.
`void`	`removeProbingPath()`	During mouse release, remove the probing path and clear the probe color mask.
`void`	`resizePanel(int panelWidth, int frameHeight)`	Resizig the control panel with ViewJFrameVolumeView's frame width and height.
`private void`	`saveImage(ModelImage img)`	Ask the user for a name to save an image as and then write it out to disk.
`void`	`saveVisualizationDataAs(boolean saveAll, java.lang.String filename, java.lang.String dirName)`	This method saves the LUT and opacity function for the active image.
`void`	`setProbeGreenColor(boolean flag)`	When the probe is picked, switch the probe geometry appearance to green.
`void`	`startBurn()`	When the burn button is clicked, invoked the start burn method to show the burnning process.
`private void`	`startBurnPacking()`	Start to try to choose an optimal ablation plan for the current target surface.
`void`	`stateChanged(javax.swing.event.ChangeEvent e)`	State change event, invokded by the sliders moves.
`javax.vecmath.Point3f`	`transformPtVolumeToImage(javax.vecmath.Point3f pt)`	Transform a java3d point [-1,1] to the image volume space.
`void`	`updateBurnList(int index)`	Updates the burn name list's selected element.
`void`	`updateProbeList()`	Update probe list.
`void`	`updateProbePos(float x, float y, float z)`	Updates the probe world coordinate from the tri-planar view's mouse drag event.
`private void`	`updateTargetLabels()`	Update the labels which show info about the current target surface.
`void`	`updateTargetList()`	Update target surface list from the JPanelSurface control dialog.
`void`	`updateTreatmentPanel(boolean swapBurnList)`	Update the treatment panel components to correpsond to the currently selected target surface.
`void`	`valueChanged(javax.swing.event.ListSelectionEvent kEvent)`	Value changed event, which invoked by probe name list, burn name list, surface name list, burn param name list.
`boolean`	`withinDistance(float centerX, float centerY, float centerZ, float ptrX, float ptrY, float ptrZ, double r)`	Check to see if the given voxel is within the sphere radius from the center point.

Methods inherited from class gov.nih.mipav.view.renderer.J3D.JPanelRendererJ3D
disposeLocal, getSurfaceRender, setRayBasedRender, setSurfaceRender

Methods inherited from class gov.nih.mipav.view.renderer.JPanelRendererBase
buildApplyButton, buildCancelButton, buildCloseButton, buildHelpButton, buildOKButton, buildTitledBorder, finalize, focusGained, focusLost, isCancelled, itemStateChanged, keyPressed, keyReleased, keyTyped, makeString, setLeftHandSystem, setVisible, setVisibleStandard, setWCSystem, testParameter

Methods inherited from class javax.swing.JPanel
getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI

Methods inherited from class javax.swing.JComponent
addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBaseline, getBaselineResizeBehavior, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getPreferredSize, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, hide, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingForPrint, isPaintingOrigin, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintComponent, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, unregisterKeyboardAction, update

Methods inherited from class java.awt.Container
add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component
action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocusInWindow, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setMixingCutoutShape, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object
clone, equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.awt.event.FocusListener
focusGained, focusLost

Methods inherited from interface java.awt.event.ItemListener
itemStateChanged

Methods inherited from interface java.awt.event.KeyListener
keyPressed, keyReleased, keyTyped

- Field Detail
  - serialVersionUID
```
private static final long serialVersionUID
```
    Use serialVersionUID for interoperability.
    
    See Also:
    
    Constant Field Values
  - NONE
```
private static int NONE
```
    cursor default nevigation mode.
  - PROBEMOVE
```
private static int PROBEMOVE
```
    cursor probe nevigation mode.
  - bonePresetButton
```
private javax.swing.JButton bonePresetButton
```
    DOCUMENT ME!
  - burnBackFaceCB
```
private javax.swing.JCheckBox burnBackFaceCB
```
    burning point back face culling check box.
  - burnBase
```
private BurnBase burnBase
```
    Burn base reference.
  - burnClipCB
```
private javax.swing.JCheckBox burnClipCB
```
    burning point clipping check box.
  - burnIndex
```
private int burnIndex
```
    Current burning point index being hightlighted.
  - burningPtTransVector
```
private javax.vecmath.Vector3f burningPtTransVector
```
    Burning point coordinate vector in world coordinate system.
  - burnList
```
private javax.swing.JList burnList
```
    Burn list that hold the burning point names.
  - calcButton
```
private javax.swing.JButton calcButton
```
    Calculat button.
  - center
```
private javax.vecmath.Point3f center
```
    Burning point coordinate.
  - centerLabel
```
private javax.swing.JLabel centerLabel
```
    burning point center label.
  - clipping
```
private boolean clipping
```
    Burning surface being clipped or not.
  - colorButton
```
private javax.swing.JButton colorButton
```
    Burning point color button.
  - colorChooser
```
private ViewJColorChooser colorChooser
```
    Color chooser when the user changes the color of the surface.
  - colorLabel
```
private javax.swing.JLabel colorLabel
```
    Burning point color label.
  - culling
```
private boolean culling
```
    Burning surface being culled ( back face bulling ) or not.
  - cursorMode
```
private int cursorMode
```
    curreent cursor nevigation mode.
  - diffVolumeLabel
```
private javax.swing.JLabel diffVolumeLabel
```
    Volume difference label for the current treatment.
  - diffVolumeText
```
private javax.swing.JTextField diffVolumeText
```
    Volume difference text.
  - drawingPane
```
private JPanelProbe.DrawingPane drawingPane
```
    Associate structure of the scroll pane to resize the panel properly.
  - endPtTransVector
```
private javax.vecmath.Vector3f endPtTransVector
```
    End point coordinate vector in the world coordinate system.
  - entryPointLabel
```
private javax.swing.JLabel entryPointLabel
```
    entry point label.
  - entryPointPanel
```
private javax.swing.JPanel entryPointPanel
```
    Panel that hold the entry point roation check box.
  - entryPointRotationCB
```
private javax.swing.JCheckBox entryPointRotationCB
```
    entry point rotation check box.
  - liverPresetButton
```
private javax.swing.JButton liverPresetButton
```
    Liver segmentation preset opacity transform function control button.
  - loadVisualizationButton
```
private javax.swing.JButton loadVisualizationButton
```
    Load button for the opacity transform function.
  - m_kProbeTwistLabel
```
private javax.swing.JLabel m_kProbeTwistLabel
```
    DOCUMENT ME!
  - m_kProbeTwistSlider
```
private javax.swing.JSlider m_kProbeTwistSlider
```
    Rotation/Twist around the direction of the probe:.
  - maxBox
```
private float maxBox
```
    The maximum of the fram box values.
  - noTargetTreatment
```
private TreatmentInformation noTargetTreatment
```
    Treatment information to be used if the user wants to burn without any target surface.
  - opacity
```
private float opacity
```
    Burning point opacity.
  - opacityLabel
```
private javax.swing.JLabel opacityLabel
```
    The opacity slider label.
  - opacitySlider
```
private javax.swing.JSlider opacitySlider
```
    burning point surface opacity slider.
  - opacitySliderLabels
```
private javax.swing.JLabel[] opacitySliderLabels
```
    burning point surface opacity slider label.
  - parentFrame
```
private ViewJFrameVolumeView parentFrame
```
    Volume view frame work reference.
  - probe
```
private Probe probe
```
    Probe reference.
  - probeList
```
private javax.swing.JList probeList
```
    Probes list.
  - probeResetButton
```
private javax.swing.JToggleButton probeResetButton
```
    Reset probe nevigation mode.
  - probeTargetButton
```
private javax.swing.JToggleButton probeTargetButton
```
    Control the tri-planar probe nevigation mode.
  - radiusLabel
```
private javax.swing.JLabel radiusLabel
```
    burning point diameter label.
  - resultLabel
```
private javax.swing.JLabel resultLabel
```
    result label to show the bone, vasculature detection information message.
  - saveVisualizationButton
```
private javax.swing.JButton saveVisualizationButton
```
    Save button for the opacity tranform function.
  - scroller
```
private javax.swing.JScrollPane scroller
```
    Scroll pane that control the resizing of the panel.
  - semiXLabel
```
private javax.swing.JLabel semiXLabel
```
    burning point semi axis X label.
  - semiXText
```
private javax.swing.JTextField semiXText
```
    burning point semi axis X text field.
  - semiYLabel
```
private javax.swing.JLabel semiYLabel
```
    burning point semi axis Y label.
  - semiYText
```
private javax.swing.JTextField semiYText
```
    burning point semi axis Y text field.
  - semiZLabel
```
private javax.swing.JLabel semiZLabel
```
    burning point semi axis Z label.
  - semiZText
```
private javax.swing.JTextField semiZText
```
    burning point semi axis Z text field.
  - showBurnLabels
```
private boolean showBurnLabels
```
    Flag indicates the show burning text label or not.
  - showBurnLabelsCB
```
private javax.swing.JCheckBox showBurnLabelsCB
```
    Show the burning text label checkbox.
  - skinPresetButton
```
private javax.swing.JButton skinPresetButton
```
    Skin segmentation preset opacity transform function control button.
  - sliderX
```
private javax.swing.JSlider sliderX
```
    The probe X slider that control the probe push and pull movements.
  - snapToTarget
```
private boolean snapToTarget
```
    Whether to snap to center of a target surface when it is selected; defaults to true.
  - snapToTargetCB
```
private javax.swing.JCheckBox snapToTargetCB
```
    Checkbox indicating whether to snap to center of a target surface when it is selected.
  - startPtTransVector
```
private javax.vecmath.Vector3f startPtTransVector
```
    Start point ( invisible ) coordinate vector in world coordinate system.
  - tabbedPane
```
private javax.swing.JTabbedPane tabbedPane
```
    The main tabbed pane in the volume view frame.
  - tabPanel
```
private javax.swing.JPanel tabPanel
```
    The main tab contrl panel.
  - targetList
```
private javax.swing.JList targetList
```
    Surface target list (tumors).
  - targetVolumeText
```
private javax.swing.JTextField targetVolumeText
```
    Label containing the volume of the current target surface.
  - targetXText
```
private javax.swing.JTextField targetXText
```
    X label for the center coordinate of the current target surface.
  - targetYText
```
private javax.swing.JTextField targetYText
```
    Y label for the center coordinate of the current target surface.
  - targetZText
```
private javax.swing.JTextField targetZText
```
    Z label for the center coordinate of the current target surface.
  - tipLengthCB
```
private javax.swing.JComboBox tipLengthCB
```
    Combo box for indicating the length of the probe tip. Currently used just by CoolTip probe.
  - toolBar
```
private javax.swing.JToolBar toolBar
```
    Tool bar.
  - totalVolumeLabel
```
private javax.swing.JLabel totalVolumeLabel
```
    Burning points total volume label.
  - totalVolumeText
```
private javax.swing.JTextField totalVolumeText
```
    Burning point total volume text.
  - traverseButton
```
private javax.swing.JToggleButton traverseButton
```
    Control the tri-planar default view nevigation mode.
  - treatmentVector
```
private java.util.Vector<TreatmentInformation> treatmentVector
```
    List of treatment sets.
  - volumeLabel
```
private javax.swing.JLabel volumeLabel
```
    buring point volume label.
  - volumeText
```
private javax.swing.JTextField volumeText
```
    burning pont volume text box.
  - xBox
```
private float xBox
```
    Parent frame box value.
  - yBox
```
private float yBox
```
    Parent frame box value.
  - zBox
```
private float zBox
```
    Parent frame box value.
  - xLabel
```
private javax.swing.JLabel xLabel
```
    burning point X, Y, Z coordinate label.
  - yLabel
```
private javax.swing.JLabel yLabel
```
    burning point X, Y, Z coordinate label.
  - zLabel
```
private javax.swing.JLabel zLabel
```
    burning point X, Y, Z coordinate label.
  - xLabelEntry
```
private javax.swing.JLabel xLabelEntry
```
    entry point X, Y, Z coordinate label.
  - yLabelEntry
```
private javax.swing.JLabel yLabelEntry
```
    entry point X, Y, Z coordinate label.
  - zLabelEntry
```
private javax.swing.JLabel zLabelEntry
```
    entry point X, Y, Z coordinate label.
  - xRes
```
private float xRes
```
    The resolutions of the (possibly respampled) image (the one shown in the renderer).
  - yRes
```
private float yRes
```
    The resolutions of the (possibly respampled) image (the one shown in the renderer).
  - zRes
```
private float zRes
```
    The resolutions of the (possibly respampled) image (the one shown in the renderer).
  - xSliderS
```
private javax.swing.JSlider xSliderS
```
    slider that controls the probe moves along the x direction.
  - xText
```
private javax.swing.JTextField xText
```
    burning point X, Y, Z coordinate text box.
  - yText
```
private javax.swing.JTextField yText
```
    burning point X, Y, Z coordinate text box.
  - zText
```
private javax.swing.JTextField zText
```
    burning point X, Y, Z coordinate text box.
  - xTextEntry
```
private javax.swing.JTextField xTextEntry
```
    entry point X, Y, Z coordinate text box.
  - yTextEntry
```
private javax.swing.JTextField yTextEntry
```
    entry point X, Y, Z coordinate text box.
  - zTextEntry
```
private javax.swing.JTextField zTextEntry
```
    entry point X, Y, Z coordinate text box.
  - ySliderS
```
private javax.swing.JSlider ySliderS
```
    slider that controls the probe moves along the y direction.
  - zSliderS
```
private javax.swing.JSlider zSliderS
```
    slider that controls the probe moves along the z direction.
- Constructor Detail
  - JPanelProbe
```
public JPanelProbe(SurfaceRender parent,
                   ViewJFrameBase _parentFrame,
                   float xBox,
                   float yBox,
                   float zBox)
```
    Constructor to initialize the probe control panel.
    
    Parameters:
    
    parent - SurfaceRender reference.
    
    _parentFrame - ViewJFrameVolumeView reference.
    
    xBox - DOCUMENT ME!
    
    yBox - DOCUMENT ME!
    
    zBox - DOCUMENT ME!
- Method Detail
  - actionPerformed
```
public void actionPerformed(java.awt.event.ActionEvent event)
```
    Action perform event function that handle all the commands in the probe panel.
    
    Specified by:
    
    actionPerformed in interface java.awt.event.ActionListener
    
    Specified by:
    
    actionPerformed in class JPanelRendererBase
    
    Parameters:
    
    event - Action Event
  - detectTissue
```
public void detectTissue()
```
    Detect the body tissue component. If the bone or the vasculature is detected, draw the corresponding color along the probing path, also, show the detection message in the search panel.
  - dispose
```
public void dispose()
```
    Dispose memory.
  - enableProbeBehavior
```
public void enableProbeBehavior(boolean flag)
```
    Enable probe mouse behavior branch group.
    
    Parameters:
    
    flag - true means turn on, false means turn off.
  - getBurnBase
```
public BurnBase getBurnBase()
```
    Get the burn base reference inside the probe control panel.
    
    Returns:
    
    BurnBase
  - getBurnLabelFlag
```
public boolean getBurnLabelFlag()
```
    Get the show burning point label's flag.
    
    Returns:
    
    boolean show label or not.
  - getBurnPoint
```
public javax.vecmath.Vector3f getBurnPoint()
```
    Get the burning point world coordinate.
    
    Returns:
    
    Vector3f burning point tranform vector.
  - getBurnRootParentBG
```
public javax.media.j3d.BranchGroup getBurnRootParentBG()
```
    Get the burn root branch group. JPanelSurface calls this method during the geometry picking procedure.
    
    Returns:
    
    BranchGroup
  - getCurSurface
```
public SurfaceAttributes getCurSurface()
```
    Get the current highlight surface.
    
    Returns:
    
    SurfaceAttributes
  - getCurTreatment
```
public TreatmentInformation getCurTreatment()
```
    Get the treatment info that matches the currently selected target surface.
    
    Returns:
    
    info about a treatment
  - getEndPoint
```
public javax.vecmath.Vector3f getEndPoint()
```
    Get the end point world coordinate vector.
    
    Returns:
    
    Vector3f end point transform vector.
  - getEntryPoint
```
public javax.vecmath.Point3f getEntryPoint()
```
    Get the entry ponit world coordinate.
    
    Returns:
    
    Point3f entry ponit transform vector.
  - getMainPanel
```
public javax.swing.JPanel getMainPanel()
```
    Get the main control panel.
    
    Specified by:
    
    getMainPanel in class JPanelRendererBase
    
    Returns:
    
    JPanel main control panel.
  - getProbeBase
```
public Probe getProbeBase()
```
    Get the probe base reference inside the burning control panel.
    
    Returns:
    
    Probe
  - getProbesRootBG
```
public javax.media.j3d.BranchGroup getProbesRootBG()
```
    Return the root to the probes branches.
    
    Returns:
    
    BranchGroup probes branch group
  - getStartPoint
```
public javax.vecmath.Vector3f getStartPoint()
```
    Get the start point world coordinate vector.
    
    Returns:
    
    Vector3f start point tranform vector.
  - getTargetSurface
```
public SurfaceAttributes getTargetSurface()
```
    Return the currently targeted surface.
    
    Returns:
    
    the attributes of the current target surface
  - isSnapToTarget
```
public boolean isSnapToTarget()
```
    Return whether the user wants to snap to the treatment target surface.
    
    Returns:
    
    whether to snap to the target
  - loadVisualizationDataFrom
```
public void loadVisualizationDataFrom(boolean loadAll,
                                      java.lang.String filename,
                                      java.lang.String dirName,
                                      boolean quietMode)
```
    This method loads the LUT and opacity transfer function for the active image.
    
    Parameters:
    
    loadAll - boolean indicating that both lut and transfer functions should be loaded. If false, then only transfer functions are loaded.
    
    filename - filename to load LUT from
    
    dirName - directory to load LUT from
    
    quietMode - if true indicates that warnings should not be displayed.
  - removeProbingPath
```
public void removeProbingPath()
```
    During mouse release, remove the probing path and clear the probe color mask.
  - resizePanel
```
public void resizePanel(int panelWidth,
                        int frameHeight)
```
    Resizig the control panel with ViewJFrameVolumeView's frame width and height.
    
    Overrides:
    
    resizePanel in class JPanelRendererBase
    
    Parameters:
    
    panelWidth - the panel should be
    
    frameHeight - the height of the renderer frame
  - saveVisualizationDataAs
```
public void saveVisualizationDataAs(boolean saveAll,
                                    java.lang.String filename,
                                    java.lang.String dirName)
```
    This method saves the LUT and opacity function for the active image. If either filename or directory is null, then the user will be prompted for a filename.
    
    Parameters:
    
    saveAll - boolean indicating that both lut and transfer functions should be saved. If false, then only transfer functions are saved.
    
    filename - filename to save LUT as
    
    dirName - directory to save LUT to
  - setProbeGreenColor
```
public void setProbeGreenColor(boolean flag)
```
    When the probe is picked, switch the probe geometry appearance to green.
    
    Parameters:
    
    flag - boolean probe picked or not.
  - startBurn
```
public void startBurn()
```
    When the burn button is clicked, invoked the start burn method to show the burnning process.
  - stateChanged
```
public void stateChanged(javax.swing.event.ChangeEvent e)
```
    State change event, invokded by the sliders moves.
    
    Specified by:
    
    stateChanged in interface javax.swing.event.ChangeListener
    
    Parameters:
    
    e - ChangeEvent
  - transformPtVolumeToImage
```
public javax.vecmath.Point3f transformPtVolumeToImage(javax.vecmath.Point3f pt)
```
    Transform a java3d point [-1,1] to the image volume space.
    
    Parameters:
    
    pt - the point in java3d space
    
    Returns:
    
    the equivalent point in volume space
  - updateBurnList
```
public void updateBurnList(int index)
```
    Updates the burn name list's selected element. Called from the JPanelSurface.
    
    Parameters:
    
    index - selected index number.
  - updateProbeList
```
public void updateProbeList()
```
    Update probe list.
  - updateProbePos
```
public void updateProbePos(float x,
                           float y,
                           float z)
```
    Updates the probe world coordinate from the tri-planar view's mouse drag event.
    
    Parameters:
    
    x - float x coordinate
    
    y - float y coordinate
    
    z - float z coordinate
  - updateTargetList
```
public void updateTargetList()
```
    Update target surface list from the JPanelSurface control dialog.
  - updateTreatmentPanel
```
public void updateTreatmentPanel(boolean swapBurnList)
```
    Update the treatment panel components to correpsond to the currently selected target surface.
    
    Parameters:
    
    swapBurnList - whether to swap in the burn list of the currently selected target surface treatment (used when a new selection is made in the target list)
  - valueChanged
```
public void valueChanged(javax.swing.event.ListSelectionEvent kEvent)
```
    Value changed event, which invoked by probe name list, burn name list, surface name list, burn param name list.
    
    Specified by:
    
    valueChanged in interface javax.swing.event.ListSelectionListener
    
    Parameters:
    
    kEvent - ListSelection Event
  - withinDistance
```
public boolean withinDistance(float centerX,
                              float centerY,
                              float centerZ,
                              float ptrX,
                              float ptrY,
                              float ptrZ,
                              double r)
```
    Check to see if the given voxel is within the sphere radius from the center point.
    
    Parameters:
    
    centerX - float center x coordinate
    
    centerY - float center y coordinate
    
    centerZ - float center z coordinate
    
    ptrX - float given point x coordinate
    
    ptrY - float given point x coordinate
    
    ptrZ - float given point x coordinate
    
    r - double given radius
    
    Returns:
    
    boolean true within the distance, false not.
  - createBoldLabel
```
private static javax.swing.JLabel createBoldLabel(java.lang.String title)
```
    Creates a label in the proper (bold) font and color.
    
    Parameters:
    
    title - The title of the label.
    
    Returns:
    
    The new label.
  - createLabel
```
private static javax.swing.JLabel createLabel(java.lang.String title)
```
    Creates a label in the proper font and color.
    
    Parameters:
    
    title - The title of the label.
    
    Returns:
    
    The new label.
  - buildBurnPackingPanel
```
private void buildBurnPackingPanel()
```
    Build the tab panel containing ablation (sphere/ellipsoid) packing parameters, etc.
  - buildBurnVisPanel
```
private void buildBurnVisPanel()
```
    Build the tab containing the color, opac, picking, labels, etc for burns.
  - buildProbeModelPanel
```
private void buildProbeModelPanel()
```
    Build the tab which allows the user to change the currently used probe model.
  - buildProbePlacementPanel
```
private void buildProbePlacementPanel()
```
    Build the tab with controls / info used in probe placement before a burn. This includes rot, trans, in/out, entry pt rotation, warning of intersection of problem regions, and the saving / loading of a problem region mapping.
  - buildProbeSlider
```
private javax.swing.JPanel buildProbeSlider()
```
    Setup the probe moving control panel that include x, y, z moving sliders.
    
    Returns:
    
    the trans x, y, z and in/out probe movement panel.
  - buildTabbedPanel
```
private void buildTabbedPanel()
```
    Build the four tabbed panes, probe control pane, burn control pane, burn parameter control pane, and demo pane.
  - buildTargetListPanel
```
private javax.swing.JPanel buildTargetListPanel()
```
    Build the target surface (tumor) control panel. This panel can add or remove surfaces, also changes the surface opacity.
    
    Returns:
    
    the target surface list panel.
  - buildTargetPanel
```
private void buildTargetPanel()
```
    Build the tab which allows the user to pick the current tumor to target, to load/remove tumor surfaces and show tumor position and volume info.
  - buildToolBar
```
private void buildToolBar()
```
    Build the probe toolbar control.
  - buildTreatmentPanel
```
private void buildTreatmentPanel()
```
    Build the tab containing ablation treatment information, including a list of burns; burn removal, position and volume; comparison of current tumor vs current set of burns.
  - enableBurnTreatmentComponents
```
private void enableBurnTreatmentComponents(boolean flag)
```
    Enable or disable the components on the target treatment panel.
    
    Parameters:
    
    flag - whether to enable the components
  - enableBurnVisComponents
```
private void enableBurnVisComponents(boolean flag)
```
    Enable or disable the components on the burn visualization panel.
    
    Parameters:
    
    flag - whether to enable the components
  - getColorChange
```
private void getColorChange(java.awt.Color color)
```
    This is called when the user chooses a new color for the surface. It changes the color of the surface.
    
    Parameters:
    
    color - Color to change surface to.
  - getTreatmentInfo
```
private TreatmentInformation getTreatmentInfo(int index)
```
    Get information about a treatment.
    
    Parameters:
    
    index - the index of the treatment to retreive
    
    Returns:
    
    info about a treatment
  - init
```
private void init()
```
    Initialize the whole probe panel control layout.
  - loadImage
```
private ModelImage loadImage()
```
    Ask the user for an image to load and return it.
    
    Returns:
    
    the image the user wants to load
  - loadVisualizationSettings
```
private void loadVisualizationSettings(TransferFunction lut,
                                       TransferFunction opac)
```
    Loads visualization settings for this image.
    
    Parameters:
    
    lut - the lut transfer function
    
    opac - the opacity transfer function
  - removeAllBurn
```
private void removeAllBurn()
```
    Remove all the burning point geometry shapes in the volume.
  - removeBurn
```
private void removeBurn()
```
    The action taken when the Remove button is clicked in the list box. All selected surfaces in the list box are removed from the scene graph.
  - saveImage
```
private void saveImage(ModelImage img)
```
    Ask the user for a name to save an image as and then write it out to disk.
    
    Parameters:
    
    img - the image to save
  - startBurnPacking
```
private void startBurnPacking()
```
    Start to try to choose an optimal ablation plan for the current target surface.
  - updateTargetLabels
```
private void updateTargetLabels()
```
    Update the labels which show info about the current target surface.

Class JPanelProbe

Nested Class Summary

Nested classes/interfaces inherited from class javax.swing.JPanel

Nested classes/interfaces inherited from class javax.swing.JComponent

Nested classes/interfaces inherited from class java.awt.Container

Nested classes/interfaces inherited from class java.awt.Component

Field Summary

Fields inherited from class gov.nih.mipav.view.renderer.J3D.JPanelRendererJ3D

Fields inherited from class gov.nih.mipav.view.renderer.JPanelRendererBase

Fields inherited from class javax.swing.JComponent

Fields inherited from class java.awt.Component

Fields inherited from interface java.awt.image.ImageObserver

Constructor Summary

Method Summary

Methods inherited from class gov.nih.mipav.view.renderer.J3D.JPanelRendererJ3D

Methods inherited from class gov.nih.mipav.view.renderer.JPanelRendererBase

Methods inherited from class javax.swing.JPanel

Methods inherited from class javax.swing.JComponent

Methods inherited from class java.awt.Container

Methods inherited from class java.awt.Component

Methods inherited from class java.lang.Object

Methods inherited from interface java.awt.event.FocusListener

Methods inherited from interface java.awt.event.ItemListener

Methods inherited from interface java.awt.event.KeyListener

Field Detail

serialVersionUID

NONE

PROBEMOVE

bonePresetButton

burnBackFaceCB

burnBase

burnClipCB

burnIndex

burningPtTransVector

burnList

calcButton

center

centerLabel

clipping

colorButton

colorChooser

colorLabel

culling

cursorMode

diffVolumeLabel

diffVolumeText

drawingPane

endPtTransVector

entryPointLabel

entryPointPanel

entryPointRotationCB

liverPresetButton

loadVisualizationButton

m_kProbeTwistLabel

m_kProbeTwistSlider

maxBox

noTargetTreatment

opacity

opacityLabel

opacitySlider

opacitySliderLabels

parentFrame

probe

probeList

probeResetButton

probeTargetButton

radiusLabel

resultLabel

saveVisualizationButton

scroller

semiXLabel

semiXText

semiYLabel

semiYText

semiZLabel

semiZText

showBurnLabels

showBurnLabelsCB

skinPresetButton

sliderX