Muscle Segmentation problems at UCSD

Problems with MIPAV 4.4.1 and java 1.6.0

None reported yet, note that MuscleSegmentation is now MuscleSegmentation441 from here.

Problems with MIPAV 4.1.2 and java 1.5.0

A list of problems found in MuscleSegmentation by UCSD using java1.5.0_13 and 12 - note that MuscleSegmentation now requires java1.6

• Statistics take longer to compute in 4.4 than 4.1 (specifically 4.1.2 and 4.1.10 had reasonable speeds) - fixed, also works well in VOI conversion
• In custom pane, VOIs can only be added in first pane (both before and after a profile has been loaded fixed, works with 1.6
• Statistics errors, need sample data - fixed, update problem solved
• GUI shows up as black on Mac, does not appear to happen with other MIPAV plugins - fixed

Features

• unit consideration - added, functional
• output per-slice - added, functional

No problems found, more testing needed:

• Overwriting VOIs, check that file has actually been written over - tested

Mipav features:

• Default VOI thickness of two, unable to change system-wide - fixed
• Alt tracing:
  • Unusual VOI flashing fixed in newer versions of MIPAV
  • Feature: VOI tracing without edge detection? working on new VOIs
• Open all VOIs from..., if folder is selected, open button should not disable - fixed