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Version 11.3.3 (2024-12-11)
is the current downloadable version. What's New
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About MIPAV

Supported Algorithms

Many of these algorithms are implemented for both monochromatic and RGB images

Autocorrelation coefficients
Autocovariance coefficients
Brain tools
- Face de-identification
- Extract brain surface (BET)
- Extract Brain surface (BSE)
Density based clustering
Edge detection
Extract surface (marching cubes)
Filtering
- FFT
  - Gaussian filter
  - Butterworth
  - Highpass
  - Lowpass
  - Bandpass
- Filters (frequency)
- Filters (Gabor)
- Filters (homomorphic)
- Filters (spatial)
  - Adaptive histogram equalization
  - Regional (for speed)
  - Neighborhood (for precision)
  - Anisotropic diffusion
  - Coherence enhancing diffusion
  - Gaussian blurring
  - Gradient magnitude
  - Laplacian
  - Mean
  - Median
  - Mode
  - Non-linear noise reduction
  - Nonmaximum supression
  - Regularized isotopic diffusion
  - Slice averaging
  - Unsharp mask
- Filters (wavelet)
Histogram Tools
- 2D Histogram
- Histogram equalization
  - Neighbourhood adaptive
  - Regional adaptive
- Histogram matching
- Histogram summary
Insight toolkit (ITK)
- Gaussian blur
Microscopy
- Colocalization
  - Expectation maximization
  - Orthogonal regression
- FRAP
- FRET
- FRET bleedthru
- FRET efficiency
- Subtract VOI background
- Restoration
  - XCOSM_EM
  - Maximum likelihood Iterative blind deconvulution
Principal Component
Registration
- Align patient position
- B-spline automatic registration 2D/3D
- B-spline automatic registration 2.5D
- Constrained optimized automatic registration
- Display pixel similarity cost functions
- Landmark
  - Least squares
  - Thin-plate spline
- Manual 2D series
- Mosaic
- Optimized automatic registration
- Optimized automatic registration 2.5D
- Optimized automatic registration 3.5D
- Time series optimized automatic registration
- VOI landmark
Segmentation
- Evaluate VOI segmentation
- Fuzzy C-means
  - Single-channel
  - Multispectral
- Graph based
- Levelset
- Levelset diffusion
- Threshold
- Watershed
Shading Correction
- Entropy Minimization
- Inhomogeneity N3 Correction
- MRI combined info
Transformation (i.e. affine)
- Reslicing / iso-tropic voxels
- Subsample
- Transform
- Transform nonlinear
- Transform to power of 2

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