java.lang.Object
- WildMagic.LibApplications.OpenGLApplication.Application
- - WildMagic.LibApplications.OpenGLApplication.JavaApplication
  - - WildMagic.LibApplications.OpenGLApplication.JavaApplication3D
    - - gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
      - gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
        
        gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender

All Implemented Interfaces:

com.jogamp.opengl.GLEventListener, SpaceNavigatorListener, NavigationBehavior.Callback, java.awt.event.KeyListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener, java.awt.event.MouseWheelListener, java.io.Serializable, java.util.EventListener, javax.swing.event.ChangeListener

Direct Known Subclasses:

VolumeTriPlanerRenderDTI
```
public class VolumeTriPlanarRender
extends VolumeTriPlanarRenderBase
implements com.jogamp.opengl.GLEventListener, java.awt.event.KeyListener, java.awt.event.MouseMotionListener, java.awt.event.MouseListener, NavigationBehavior.Callback
```
See Also:

Serialized Form

Field Summary

Fields
Modifier and Type	Field	Description
`protected boolean`	`altPressed`
`private int`	`animateStep`
`private JPanelAnnotationAnimation`	`annotationAnimationPanel`
`private java.util.HashMap<java.lang.String,java.lang.Float>`	`annotationDiameters`
`private java.util.HashMap<java.lang.String,java.lang.Boolean>`	`annotationLabelsDisplay`
`private java.lang.String[]`	`annotationNames`
`private VOIVector`	`annotationPositions`
`private java.util.HashMap<java.lang.String,VolumeSurface>`	`annotationSpheres`
`private java.util.HashMap<java.lang.String,WildMagic.LibFoundation.Mathematics.ColorRGB>`	`annotationSpheresColors`
`private java.util.HashMap<java.lang.String,java.lang.Boolean>`	`annotationSpheresDisplay`
`private int`	`annotationSpheresIndex`
`private java.util.HashMap<java.lang.String,VOI>`	`annotationVOIs`
`protected RendererListener`	`configuredListener`
`protected VolumeTriPlanarInterface`	`m_kParent`	Parent user-interface and display frame.
`private VOILatticeManagerInterface`	`m_kVOIInterface`
`private java.util.HashMap<java.lang.String,java.lang.Boolean>`	`neuriteDisplay`
`private java.util.Vector<java.lang.String>`	`neuriteNames`
`private java.util.HashMap<java.lang.String,VolumeSurface[]>`	`neuriteSurfaces`
`private java.util.HashMap<java.lang.String,VOI[]>`	`neuriteVOIs`
`protected boolean`	`rightMousePressed`
`private static long`	`serialVersionUID`
`protected boolean`	`shiftPressed`
`private float`	`sphereScale`

Fields inherited from class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
animateSlice, annotatePtsCounter, annotatePtsList, caps, fSample_mouseDragged, fSample_mouseReleased, gl_height, gl_width, glp, init, isAnnotateEnabled, isMouseControlEnabled, isNavigationEnabled, isPathPlanningEnabled, kGeometryBranchPath, kPoly, kPolyNode, latticeClip, latticeClipAxes, latticeClipBox, latticeClipExtents, latticeClipPos, m_afArbEquation, m_afArbEquationInv, m_akSceneTarget, m_akSlicesColor, m_bArbClipOn, m_bCrop, m_bDisplay, m_bDisplaySecond, m_bDropper, m_bErase, m_bFirstDisplay, m_bFirstRender, m_bGeodesicEnabled, m_bPaint, m_bPaintCan, m_bPaintEnabled, m_bPickCorrespondence, m_bPlay4D, m_bPlay4DVOIs, m_bResetImages, m_bUpdateCenterOnDisplay, m_bWriteImage, m_fAnimateRate, m_iAnimateCount, m_iBrushSize, m_iExtractLevel, m_iStereo, m_kArbitraryClip, m_kArbitraryClipInv, m_kDTIDisplay, m_kFBO, m_kFlyPathGraphCurve, m_kNewCenter, m_kNormalColorPathUnvisited, m_kPaintColor, m_kSculptor, m_kShared, m_kSlices, m_kVolumeBox, m_kVolumeClip, m_kVolumeCube, m_kVolumeRayCast, m_pkPlane, m_pkScreenCamera, m_spkPlaneEffect, ms_akLUTTexture, ms_NumHistogramLUTs, navigationBehavior, profile, sharedDrawable, sharedRenderer, sliceDir, sphereClip, sphereRadius

Fields inherited from class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
currentLocation, defaultVelocityRotational, defaultVelocityTranslational, hyperstack, hyperstackColormap, isSpaceNavCodeRunning, m_akLights, m_bDispose, m_bDoClip, m_bExtract, m_bFirstDrag, m_bInit, m_bModified, m_bMouseDrag, m_bPickPending, m_bShared, m_bSnapshot, m_bStandAlone, m_bSurfaceMaskUpdate, m_bSurfaceUpdate, m_bTestFrameRate, m_bVisible, m_fMax, m_fX, m_fY, m_fZ, m_iCaptureFPS, m_iScreenCaptureCounter, m_iXPick, m_iYPick, m_kAnimator, m_kCuller, m_kDeleteList, m_kDisplayList, m_kPicker, m_kSceneToWorld, m_kTranslate, m_kVolumeImageA, m_kVolumeImageA_New, m_kVolumeImageA_Old, m_kVolumeImageB, m_kVolumeImageB_New, m_kVolumeImageB_Old, m_kWinLevel, m_kXRotate, m_kYRotate, m_kZRotate, m_spkCull, m_spkScene, mouseRot, nearPlane, rotPower, rotScalar, transPower, transScalar, updateBoundingCube, zVector, ZXDistanceStep, ZYDistanceStep, ZZDistanceStep

Fields inherited from class WildMagic.LibApplications.OpenGLApplication.JavaApplication3D
cameraParams, m_akWorldAxis, m_bCameraMoveable, m_bDArrowPressed, m_bEndPressed, m_bHomePressed, m_bLArrowPressed, m_bLInsertPressed, m_bObjectZoomed, m_bPgDnPressed, m_bPgUpPressed, m_bRArrowPressed, m_bRDeletePressed, m_bTrackBallDown, m_bUArrowPressed, m_bUseTrackBall, m_dAccumulatedTime, m_dFrameRate, m_dLastTime, m_fRotSpeed, m_fRotSpeedFactor, m_fTrnSpeed, m_fTrnSpeedFactor, m_fXDrag0, m_fXTrack0, m_fXTrack1, m_fYDrag0, m_fYTrack0, m_fYTrack1, m_fZoomSpeed, m_iAccumulatedFrameCount, m_iDoPitch, m_iDoRoll, m_iDoYaw, m_iFrameCount, m_iMaxTimer, m_iMouseButton, m_iTimer, m_kSaveRotate, m_mouseRotSpeed, m_spkCamera, m_spkMotionObject, pitchRotationAngle, rollRotationAngle, xCameraMove, xCameraTurn, yawRotationAngle, yCameraMove, yCameraTurn, zCameraMove

Fields inherited from class WildMagic.LibApplications.OpenGLApplication.JavaApplication
m_acWindowTitle, m_eBuffering, m_eDepth, m_eFormat, m_eMultisampling, m_eStencil, m_iHeight, m_iWidth, m_iXPosition, m_iYPosition, m_kBackgroundColor, m_pkRenderer

Constructor Summary

Constructors
Constructor	Description
`VolumeTriPlanarRender()`	Default Constructor.
`VolumeTriPlanarRender(VolumeImage kVolumeImageA)`
`VolumeTriPlanarRender(VolumeImage[] images, WildMagic.LibGraphics.Rendering.Texture colormap)`
`VolumeTriPlanarRender(VolumeTriPlanarInterface kParent, com.jogamp.opengl.util.Animator kAnimator, VolumeImage kVolumeImageA, VolumeImage kVolumeImageB)`	Construct the Volume/Surface/Tri-Planar renderer.
`VolumeTriPlanarRender(VolumeTriPlanarInterface kParent, VolumeImage kVolumeImageA, VolumeImage kVolumeImageB)`	Construct the Volume/Surface/Tri-Planar renderer.
`VolumeTriPlanarRender(VolumeTriPlanarRender kShared, com.jogamp.opengl.awt.GLCanvas kCanvas, VolumeTriPlanarInterface kParent, VolumeImage kVolumeImageA, VolumeImage kVolumeImageB)`	Construct the Volume/Surface/Tri-Planar renderer.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`add3DMarker(VOI textVOI, boolean automaticLabel, boolean multiSelect)`
`void`	`add3DMarker(VOI textVOI, boolean automaticLabel, boolean multiSelect, boolean isShift)`
`void`	`addAnimationVOIs(VOIVector vois, JPanelAnnotationAnimation annotationAnimationPanel)`
`void`	`addAnnotationPoint(WildMagic.LibFoundation.Mathematics.Vector3f point, WildMagic.LibFoundation.Mathematics.Vector3f scannerPt)`	Add the annotation point
`void`	`addConfiguredListener(RendererListener listener)`
`void`	`addNeurite(java.lang.String neuriteName, java.lang.String[] names, WildMagic.LibFoundation.Mathematics.ColorRGB color)`
`private void`	`addSphere(WildMagic.LibFoundation.Mathematics.Vector3f center, int index)`
`void`	`addSphereVOIs(VOI annotations)`
`private void`	`animateAlgorithm()`
`java.lang.String`	`annotationPrefix()`
`void`	`annotationVOIsUpdate(int value)`
`boolean`	`applySculpt(boolean bAll)`	Apply the sculpt region to the volume.
`void`	`clear3DSelection()`
`void`	`clearPath()`	Clear the annotated path
`private void`	`createAnnotatePoint(WildMagic.LibFoundation.Mathematics.Vector3f kPosition)`	Create a new Annotation point at the position specified.
`private WildMagic.LibGraphics.SceneGraph.Polyline`	`createBranchPathGeometryScaled(int iBranch)`	Translate the path points from image coordinate to view volume coordinate.
`private WildMagic.LibGraphics.SceneGraph.TriMesh`	`createNeuriteSurface(VOIContour neurite, WildMagic.LibFoundation.Mathematics.ColorRGB color, float radius)`
`protected void`	`CreateScene()`	Called by the init() function.
`private WildMagic.LibGraphics.Surfaces.TubeSurface`	`createTube(VOIContour neurite)`
`void`	`deleteSelectedPoint()`
`void`	`display(com.jogamp.opengl.GLAutoDrawable arg0)`
`private boolean`	`displayedNeurite(java.lang.String neuriteName)`
`void`	`displayNeurite(java.lang.String neuriteName, boolean display)`
`void`	`dispose(com.jogamp.opengl.GLAutoDrawable kDrawable)`	memory cleanup.
`boolean`	`doAutomaticLabels()`
`void`	`generatePath()`	Generate the path planning path.
`void`	`getAnnotationInfo(java.lang.String name, boolean[] display, java.awt.Color[] color, float[] diameter, boolean[] displayLabel, java.awt.Color[] labelColor)`
`WildMagic.LibFoundation.Mathematics.Vector3f`	`getPositionScaled(WildMagic.LibFoundation.Mathematics.Vector3f kPoint)`	Scaled coordinates for the current position along the path for viewing.
`VOI`	`getSelectedVOI(java.lang.String name)`
`boolean`	`hasSelectedPoint()`
`boolean`	`is3DSelectionEnabled()`
`boolean`	`isEditAnnotations()`
`void`	`keyPressed(java.awt.event.KeyEvent e)`	Part of the KeyListener interface.
`void`	`keyReleased(java.awt.event.KeyEvent e)`
`boolean`	`modify3DMarker(WildMagic.LibFoundation.Mathematics.Vector3f startPt, WildMagic.LibFoundation.Mathematics.Vector3f endPt, WildMagic.LibFoundation.Mathematics.Vector3f pt)`
`void`	`mouseDragged(java.awt.event.MouseEvent e)`	Rotates the object with a virtual trackball:
`void`	`mousePressed(java.awt.event.MouseEvent e)`	Rotates the object with a virtual trackball:
`void`	`mouseReleased(java.awt.event.MouseEvent e)`	Rotates the object with a virtual trackball:
`void`	`moveSelectedPoint(WildMagic.LibFoundation.Mathematics.Vector3f direction)`
`protected void`	`Pick()`	Picking.
`private boolean`	`PickSlice3D(WildMagic.LibFoundation.Mathematics.Vector3f kPos, WildMagic.LibFoundation.Mathematics.Vector3f kDir, WildMagic.LibFoundation.Mathematics.Vector3f maxPt)`
`private void`	`PickVolume3D(WildMagic.LibFoundation.Mathematics.Vector3f kPos, WildMagic.LibFoundation.Mathematics.Vector3f kDir, WildMagic.LibFoundation.Mathematics.Vector3f maxPt)`
`void`	`play4DVOIs(boolean bOn)`
`private void`	`processRightMouseDrag(java.awt.event.MouseEvent kEvent)`	If the right mouse button is pressed and dragged. processRightMouseDrag updates the HistoLUT window and level (contrast and brightness)
`void`	`reCreateScene(VolumeImage image)`	Called by the init() function.
`boolean`	`select3DMarker(WildMagic.LibFoundation.Mathematics.Vector3f startPt, WildMagic.LibFoundation.Mathematics.Vector3f endPt, WildMagic.LibFoundation.Mathematics.Vector3f pt, boolean rightMouse, boolean multiSelect)`
`void`	`setAnnotationDiameter(java.lang.String name, float diameter)`
`void`	`setAnnotationMode(boolean _isAnnotateEnabled)`
`void`	`setAnnotationVOIColor(java.lang.String name, WildMagic.LibFoundation.Mathematics.ColorRGB color)`
`void`	`setCameraCenter(WildMagic.LibFoundation.Mathematics.Vector3f kCenter)`	Update the camera in 3D view window.
`void`	`setCameraViewRotationDegree(int degree)`	Set camera view rotation degree
`void`	`setDefaultCursor()`
`void`	`setDisplayAnnotation(java.lang.String name, boolean display)`
`void`	`setDisplayAnnotationLabel(java.lang.String name, boolean display)`
`void`	`setMouseControlFlythru(boolean _isMouseControl)`
`void`	`setNeuriteColor(java.lang.String neuriteName, WildMagic.LibFoundation.Mathematics.ColorRGB color)`
`void`	`setPathPlanningFlythru(boolean _isPathPlanning)`
`void`	`setupNavigationScenegraph()`	Setup the Navigation scene graph view for debugging purpose
`void`	`setVOILatticeManager(VOILatticeManagerInterface newVOIInterface)`
`private void`	`setWindowLevel(float fX, float fY, boolean first)`
`private WildMagic.LibFoundation.Curves.NaturalSpline3`	`smoothCurve(VOIContour curve, float[] time)`
`void`	`toggleNavigation(boolean _isNavigationEnabled)`	Toggle Navigation mode.
`void`	`undoSculpt(boolean bAll)`	Undo applying the sculpt region to the volume.
`protected void`	`update4D(boolean bForward)`
`protected void`	`update4DVOIs(boolean bForward)`
`private void`	`updateContour(VOIContour contour, VOI positions, java.lang.String[] names)`
`private void`	`updateNeurite(java.lang.String neuriteName, java.lang.String[] names, WildMagic.LibFoundation.Mathematics.ColorRGB color)`
`void`	`updateSceneNodePoint(java.lang.String name, WildMagic.LibFoundation.Mathematics.Vector3f position)`	Currently only being used to update the picking point
`protected void`	`UpdateSceneRotation()`	Updates the displayed objects based on any user mouse rotation.
`void`	`updateSlicesCenter(WildMagic.LibFoundation.Mathematics.Vector3f loc)`	Update the bottom 3 planar view center
`void`	`updateVOIs()`
`protected void`	`updateVOIs(VOIVector kVOIs)`
`void`	`viewChanged(NavigationBehavior behavior, int iEvent)`	Navigation behavior callback handler
`boolean`	`writeImage()`	Writes a the frame buffer as a .jpg image to disk.

Methods inherited from class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
addAnimationLattice, addAnimationVOIs, addGeodesic, addSurface, addSurface, addSurface, addTract, addVolumeVOI, applyClipFilter, blend, clearSculpt, clipAnnotations, CMPMode, CreateRenderTarget, cropClipVolume, deleteVOIs, displayArbitraryClipPlane, displayBoundingBox, displayClipPlane, displayClipPlane, displayNode, displayOrientationCube, displaySurface, displayVOIs, displayVolumeRaycast, displayVolumeSlices, disposeShared, doClip, drawVOI, DRRMode, enableArbitraryClipPlane, enableClipPlane, enableEyeClipPlane, enableEyeInvClipPlane, enableGeodesic, enablePaint, enableSculpt, eraseAllPaint, extractMeshFromVolume, getABBlend, getArbitratyClip, getArbitratyClipOn, getClip, getClipAEEnable, getClipColor, getClipDisplay, getClipEnable, getClipInv, getClipInvDisplay, getClipInvEnable, getContainingPanel, getGradientMagnitude, getGroupColor, getHistogramLUTTexture, getHistogramLUTTextureIndex, getIPD, getMaterial, getOpacity, getPolylines, getSculpt, getSculptEnabled, getSurface, getSurfaceArea, getSurfaceAreaString, getSurfaceCenter, getSurfaceVolume, getSurfaceVolumeString, getTranslateSurface, getVolumeSurface, init, init, initClass, initShared, invertSculpt, MIPMode, mouseClicked, Move, MULTIHISTOMode, newSharedCanvas, NormalKernel, pickCorrespondence, play4D, play4DVOIs, reCreateScene, redrawSurfaceTexture, releaseShared, reloadShaders, removeAll, removeAllGeodesic, removeAllSurfaces, removeGeodesic, removePolyline, removeSurface, Render, replaceGeodesic, resetView, reshape, rollbackToCenter, save, saveCroppedImage, selfShadow, setABBlend, setAnimationSpeed, setAnimationSpeed, setArbColor, setArbitraryClipPlane, setArbitratyClip, setArbitratyClip, setBackface, setBackgroundColor, setBoundingBoxColor, setBoundingBoxColor, setCenter, setClipping, setClipPlane, setClipPlaneColor, setColor, SetCustomBlend, setDisplayAllGlyphs, setDisplayArrows, setDisplayCylinders, setDisplayEllipsoids, setDisplayTubes, setDrawingShape, setDTIImage, setEllipseMod, setEyeClipPlane, setEyeColor, setEyeInvClipPlane, setEyeInvColor, setGradientMagnitude, setHyperStack, setImageB, setImageNew, setImageOn, setImages, setIntenstityLevel, setIPD, setLatticeClip, setLUTNew, setMaterial, setMouseRotationSpeed, setMouseTranslationSpeed, setMouseZoomSpeed, setPickable, setPlaneConstant, setPolygonMode, setPolylineColor, setRGBTA, setRGBTB, setSliceOpacity, setStereo, setSurfaceTexture, setView, setVolumeBlend, setVolumeColor, setVolumeSamplesMouseDragged, setVolumeSamplesMouseReleased, showBoundingBox, showSlice, smoothMesh, smoothThree, smoothTwo, startRecording, startStopVOIAnimation, stateChanged, SURFASTMode, SURMode, toggleDisplaySurface, toggleDisplayVOI, toggleDisplayVolume, toggleDisplayVolumeSlices, toggleGeodesicPathDisplay, translateSurface, updateCenterOnDisplay, updateData, updateLevWidgetState, updateSphere

Methods inherited from class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
AddNode, checkIfSpaceNavNeedsCalibration, dispose, drawText, fineMovement, GetCanvas, getCounter, getDisplayList, getImage, GetLights, getNearPlane, GetNode, getNormalizedXDim, getNormalizedYDim, getNormalizedZDim, getRotationCutoffValue, getRotationScaleFactor, GetSceneRotation, getSceneToWorldMatrix, getTranslate, getTranslationCutoffValue, getTranslationScaleFactor, getVolumeImage, getVolumeImageB, invertRX, invertRY, invertRZ, invertTX, invertTY, invertTZ, isUseMouseRotationCutoffs, isUseMouseTranslationCutoffs, isVisible, normalMovement, pauseAnimator, processSpaceNavEvent, processSpaceNavEvent, record, reInitialize, RemoveNode, RenderFrameRate, resetAxis, resetAxisX, resetAxisXInv, resetAxisY, saveAVIMovie, saveQuickTimeMovie, setCameraNearPlane, setDefaultLighting, setOrthographicProjection, setPerspectiveProjection, setRotationCutoffValue, setRotationScaleFactor, SetSceneRotation, setTranslationCutoffValue, setTranslationScaleFactor, setUseMouseRotationCutoffs, setUseMouseTranslationCutoffs, setVisible, startAnimator, updateImageFromRotation, updateLighting

Methods inherited from class WildMagic.LibApplications.OpenGLApplication.JavaApplication3D
DrawFrameRate, getCameraLocation, getCameraParameters, getObjectParameters, getObjectRotation, InitializeCameraMotion, InitializeCameraMotion, InitializeObjectMotion, keyTyped, LookDown, LookUp, MeasureTime, mouseEntered, mouseExited, mouseMoved, mouseWheelMoved, MoveBackward, MoveCamera, MoveDown, MoveForward, MoveLeft, MoveObject, MoveRight, MoveUp, OnDisplay, OnInitialize, OnTerminate, ResetTime, RotateTrackBall, setCameraLocation, setCameraParameters, setObjectParameters, setObjectRotation, TurnLeft, TurnRight, UpdateCameraRotationSpeed, UpdateCameraTranslationSpeed, UpdateCameraZoomSpeed, UpdateFrameCount, UpdateMouseRotationSpeed

Methods inherited from class WildMagic.LibApplications.OpenGLApplication.JavaApplication
GetAspectRatio, GetHeight, GetRenderer, GetWidth, GetWindowTitle, GetXPosition, GetYPosition, OnIdle, OnMove, OnPrecreate, OnResize, SetRenderer

Methods inherited from class WildMagic.LibApplications.OpenGLApplication.Application
TestStreaming

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface com.jogamp.opengl.GLEventListener
init, reshape

Methods inherited from interface java.awt.event.KeyListener
keyTyped

Methods inherited from interface java.awt.event.MouseListener
mouseClicked, mouseEntered, mouseExited

Methods inherited from interface java.awt.event.MouseMotionListener
mouseMoved

Field Detail

serialVersionUID
```
private static final long serialVersionUID
```
See Also:

Constant Field Values

m_kParent
```
protected VolumeTriPlanarInterface m_kParent
```
Parent user-interface and display frame.

configuredListener

protected RendererListener configuredListener

rightMousePressed
```
protected boolean rightMousePressed
```

altPressed
```
protected boolean altPressed
```

shiftPressed
```
protected boolean shiftPressed
```

m_kVOIInterface

private VOILatticeManagerInterface m_kVOIInterface

animateStep
```
private int animateStep
```

annotationPositions
```
private VOIVector annotationPositions
```

annotationDiameters

private java.util.HashMap<java.lang.String,java.lang.Float> annotationDiameters

annotationSpheres

private java.util.HashMap<java.lang.String,VolumeSurface> annotationSpheres

annotationSpheresDisplay

private java.util.HashMap<java.lang.String,java.lang.Boolean> annotationSpheresDisplay

annotationSpheresIndex
```
private int annotationSpheresIndex
```

annotationVOIs

private java.util.HashMap<java.lang.String,VOI> annotationVOIs

neuriteVOIs

private java.util.HashMap<java.lang.String,VOI[]> neuriteVOIs

neuriteSurfaces

private java.util.HashMap<java.lang.String,VolumeSurface[]> neuriteSurfaces

neuriteDisplay

private java.util.HashMap<java.lang.String,java.lang.Boolean> neuriteDisplay

annotationSpheresColors

private java.util.HashMap<java.lang.String,WildMagic.LibFoundation.Mathematics.ColorRGB> annotationSpheresColors

annotationAnimationPanel

private JPanelAnnotationAnimation annotationAnimationPanel

annotationLabelsDisplay

private java.util.HashMap<java.lang.String,java.lang.Boolean> annotationLabelsDisplay

annotationNames

private java.lang.String[] annotationNames

sphereScale
```
private float sphereScale
```

neuriteNames

private java.util.Vector<java.lang.String> neuriteNames

Constructor Detail

VolumeTriPlanarRender
```
public VolumeTriPlanarRender()
```
Default Constructor.

VolumeTriPlanarRender

public VolumeTriPlanarRender(VolumeImage kVolumeImageA)

VolumeTriPlanarRender

public VolumeTriPlanarRender(VolumeTriPlanarInterface kParent,
                             com.jogamp.opengl.util.Animator kAnimator,
                             VolumeImage kVolumeImageA,
                             VolumeImage kVolumeImageB)

Construct the Volume/Surface/Tri-Planar renderer.

Parameters:: kParent - parent user-interface and frame.; kAnimator - animator used to display the canvas.; kVolumeImageA - volume data and textures for ModelImage A.; kVolumeImageB - volume data and textures for ModelImage B.

VolumeTriPlanarRender

public VolumeTriPlanarRender(VolumeTriPlanarRender kShared,
                             com.jogamp.opengl.awt.GLCanvas kCanvas,
                             VolumeTriPlanarInterface kParent,
                             VolumeImage kVolumeImageA,
                             VolumeImage kVolumeImageB)

Construct the Volume/Surface/Tri-Planar renderer.

Parameters:: kParent - parent user-interface and frame.; kAnimator - animator used to display the canvas.; kVolumeImageA - volume data and textures for ModelImage A.; kVolumeImageB - volume data and textures for ModelImage B.

VolumeTriPlanarRender

public VolumeTriPlanarRender(VolumeTriPlanarInterface kParent,
                             VolumeImage kVolumeImageA,
                             VolumeImage kVolumeImageB)

Construct the Volume/Surface/Tri-Planar renderer.

Parameters:: kVolumeImageA - volume data and textures for ModelImage A.; kVolumeImageB - volume data and textures for ModelImage B.

VolumeTriPlanarRender

public VolumeTriPlanarRender(VolumeImage[] images,
                             WildMagic.LibGraphics.Rendering.Texture colormap)

Method Detail

applySculpt
```
public boolean applySculpt(boolean bAll)
```
Apply the sculpt region to the volume.

Overrides:

applySculpt in class VolumeTriPlanarRenderBase

display
```
public void display(com.jogamp.opengl.GLAutoDrawable arg0)
```
Specified by:

display in interface com.jogamp.opengl.GLEventListener

Overrides:

display in class VolumeTriPlanarRenderBase

addConfiguredListener

public void addConfiguredListener(RendererListener listener)

dispose
```
public void dispose(com.jogamp.opengl.GLAutoDrawable kDrawable)
```
Description copied from class: GPURenderBase

memory cleanup.

Specified by:

dispose in interface com.jogamp.opengl.GLEventListener

Overrides:

dispose in class VolumeTriPlanarRenderBase

setVOILatticeManager

public void setVOILatticeManager(VOILatticeManagerInterface newVOIInterface)

clear3DSelection
```
public void clear3DSelection()
```

annotationPrefix

public java.lang.String annotationPrefix()

doAutomaticLabels
```
public boolean doAutomaticLabels()
```

is3DSelectionEnabled
```
public boolean is3DSelectionEnabled()
```

isEditAnnotations
```
public boolean isEditAnnotations()
```

deleteSelectedPoint
```
public void deleteSelectedPoint()
```

moveSelectedPoint

public void moveSelectedPoint(WildMagic.LibFoundation.Mathematics.Vector3f direction)

hasSelectedPoint
```
public boolean hasSelectedPoint()
```

keyPressed
```
public void keyPressed(java.awt.event.KeyEvent e)
```
Part of the KeyListener interface. Pressing 'b' toggles displaying the proxy-geometry versus the ray-traced volume.

Specified by:

keyPressed in interface java.awt.event.KeyListener

Overrides:

keyPressed in class VolumeTriPlanarRenderBase

Parameters:

e - the key event.

keyReleased
```
public void keyReleased(java.awt.event.KeyEvent e)
```
Specified by:

keyReleased in interface java.awt.event.KeyListener

Overrides:

keyReleased in class WildMagic.LibApplications.OpenGLApplication.JavaApplication3D

mousePressed
```
public void mousePressed(java.awt.event.MouseEvent e)
```
Description copied from class: VolumeTriPlanarRenderBase

Rotates the object with a virtual trackball:

Specified by:

mousePressed in interface java.awt.event.MouseListener

Overrides:

mousePressed in class VolumeTriPlanarRenderBase

Parameters:

e - the MouseEvent

mouseReleased
```
public void mouseReleased(java.awt.event.MouseEvent e)
```
Description copied from class: VolumeTriPlanarRenderBase

Rotates the object with a virtual trackball:

Specified by:

mouseReleased in interface java.awt.event.MouseListener

Overrides:

mouseReleased in class VolumeTriPlanarRenderBase

Parameters:

e - the MouseEvent

setDefaultCursor
```
public void setDefaultCursor()
```

select3DMarker

public boolean select3DMarker(WildMagic.LibFoundation.Mathematics.Vector3f startPt,
                              WildMagic.LibFoundation.Mathematics.Vector3f endPt,
                              WildMagic.LibFoundation.Mathematics.Vector3f pt,
                              boolean rightMouse,
                              boolean multiSelect)

modify3DMarker

public boolean modify3DMarker(WildMagic.LibFoundation.Mathematics.Vector3f startPt,
                              WildMagic.LibFoundation.Mathematics.Vector3f endPt,
                              WildMagic.LibFoundation.Mathematics.Vector3f pt)

add3DMarker

public void add3DMarker(VOI textVOI,
                        boolean automaticLabel,
                        boolean multiSelect,
                        boolean isShift)

add3DMarker

public void add3DMarker(VOI textVOI,
                        boolean automaticLabel,
                        boolean multiSelect)

mouseDragged
```
public void mouseDragged(java.awt.event.MouseEvent e)
```
Rotates the object with a virtual trackball:

Specified by:

mouseDragged in interface java.awt.event.MouseMotionListener

Overrides:

mouseDragged in class VolumeTriPlanarRenderBase

Parameters:

e - the MouseEvent

processRightMouseDrag
```
private void processRightMouseDrag(java.awt.event.MouseEvent kEvent)
```
If the right mouse button is pressed and dragged. processRightMouseDrag updates the HistoLUT window and level (contrast and brightness)

Parameters:

kEvent - the mouse event generated by a mouse drag

setWindowLevel

private void setWindowLevel(float fX,
                            float fY,
                            boolean first)

undoSculpt
```
public void undoSculpt(boolean bAll)
```
Undo applying the sculpt region to the volume.

Overrides:

undoSculpt in class VolumeTriPlanarRenderBase

CreateScene
```
protected void CreateScene()
```
Called by the init() function. Creates and initialized the scene-graph.

Overrides:

CreateScene in class VolumeTriPlanarRenderBase

reCreateScene
```
public void reCreateScene(VolumeImage image)
```
Description copied from class: VolumeTriPlanarRenderBase

Called by the init() function. Creates and initialized the scene-graph.

Overrides:

reCreateScene in class VolumeTriPlanarRenderBase

Pick
```
protected void Pick()
```
Picking. If a display list object has picking enabled, find the picked polygon based on the mouse position.

Overrides:

Pick in class VolumeTriPlanarRenderBase

PickVolume3D

private void PickVolume3D(WildMagic.LibFoundation.Mathematics.Vector3f kPos,
                          WildMagic.LibFoundation.Mathematics.Vector3f kDir,
                          WildMagic.LibFoundation.Mathematics.Vector3f maxPt)

PickSlice3D

private boolean PickSlice3D(WildMagic.LibFoundation.Mathematics.Vector3f kPos,
                            WildMagic.LibFoundation.Mathematics.Vector3f kDir,
                            WildMagic.LibFoundation.Mathematics.Vector3f maxPt)

update4D
```
protected void update4D(boolean bForward)
```
Overrides:

update4D in class VolumeTriPlanarRenderBase

updateVOIs
```
public void updateVOIs()
```

updateVOIs
```
protected void updateVOIs(VOIVector kVOIs)
```
Overrides:

updateVOIs in class VolumeTriPlanarRenderBase

addSphere

private void addSphere(WildMagic.LibFoundation.Mathematics.Vector3f center,
                       int index)

toggleNavigation
```
public void toggleNavigation(boolean _isNavigationEnabled)
```
Toggle Navigation mode.

Overrides:

toggleNavigation in class VolumeTriPlanarRenderBase

Parameters:

isNavigationEnabled - is navigation checkbox selected or not.

setPathPlanningFlythru

public void setPathPlanningFlythru(boolean _isPathPlanning)

setMouseControlFlythru

public void setMouseControlFlythru(boolean _isMouseControl)

setAnnotationMode

public void setAnnotationMode(boolean _isAnnotateEnabled)

setupNavigationScenegraph
```
public void setupNavigationScenegraph()
```
Setup the Navigation scene graph view for debugging purpose

viewChanged
```
public void viewChanged(NavigationBehavior behavior,
                        int iEvent)
```
Navigation behavior callback handler

Specified by:

viewChanged in interface NavigationBehavior.Callback

Parameters:

behavior - reference to this MjFlyPathBehavior in which the view changed.

iEvent - Bitmask identifies the event(s) which caused the view to change. Bitmask created from OR of EVENT_* defintions.

getPositionScaled
```
public WildMagic.LibFoundation.Mathematics.Vector3f getPositionScaled(WildMagic.LibFoundation.Mathematics.Vector3f kPoint)
```
Scaled coordinates for the current position along the path for viewing.

Parameters:

Point - in normalized path coordinates.

Returns:

Point3f A new instance created which contains the path position coordinates, scaled to match the TriMesh in JPanelSurface.

update4DVOIs
```
protected void update4DVOIs(boolean bForward)
```
Overrides:

update4DVOIs in class VolumeTriPlanarRenderBase

animateAlgorithm
```
private void animateAlgorithm()
```

addAnimationVOIs

public void addAnimationVOIs(VOIVector vois,
                             JPanelAnnotationAnimation annotationAnimationPanel)

addSphereVOIs
```
public void addSphereVOIs(VOI annotations)
```
Overrides:

addSphereVOIs in class VolumeTriPlanarRenderBase

displayedNeurite

private boolean displayedNeurite(java.lang.String neuriteName)

updateNeurite

private void updateNeurite(java.lang.String neuriteName,
                           java.lang.String[] names,
                           WildMagic.LibFoundation.Mathematics.ColorRGB color)

updateContour

private void updateContour(VOIContour contour,
                           VOI positions,
                           java.lang.String[] names)

displayNeurite

public void displayNeurite(java.lang.String neuriteName,
                           boolean display)

setNeuriteColor

public void setNeuriteColor(java.lang.String neuriteName,
                            WildMagic.LibFoundation.Mathematics.ColorRGB color)

addNeurite

public void addNeurite(java.lang.String neuriteName,
                       java.lang.String[] names,
                       WildMagic.LibFoundation.Mathematics.ColorRGB color)

setAnnotationVOIColor

public void setAnnotationVOIColor(java.lang.String name,
                                  WildMagic.LibFoundation.Mathematics.ColorRGB color)

Overrides:: setAnnotationVOIColor in class VolumeTriPlanarRenderBase

setDisplayAnnotation

public void setDisplayAnnotation(java.lang.String name,
                                 boolean display)

getAnnotationInfo

public void getAnnotationInfo(java.lang.String name,
                              boolean[] display,
                              java.awt.Color[] color,
                              float[] diameter,
                              boolean[] displayLabel,
                              java.awt.Color[] labelColor)

setAnnotationDiameter

public void setAnnotationDiameter(java.lang.String name,
                                  float diameter)

getSelectedVOI

public VOI getSelectedVOI(java.lang.String name)

setDisplayAnnotationLabel

public void setDisplayAnnotationLabel(java.lang.String name,
                                      boolean display)

smoothCurve

private WildMagic.LibFoundation.Curves.NaturalSpline3 smoothCurve(VOIContour curve,
                                                                  float[] time)

createTube

private WildMagic.LibGraphics.Surfaces.TubeSurface createTube(VOIContour neurite)

createNeuriteSurface

private WildMagic.LibGraphics.SceneGraph.TriMesh createNeuriteSurface(VOIContour neurite,
                                                                      WildMagic.LibFoundation.Mathematics.ColorRGB color,
                                                                      float radius)

play4DVOIs
```
public void play4DVOIs(boolean bOn)
```
Overrides:

play4DVOIs in class VolumeTriPlanarRenderBase

writeImage
```
public boolean writeImage()
```
Description copied from class: GPURenderBase

Writes a the frame buffer as a .jpg image to disk. The file name is captureImage + the image number.

Overrides:

writeImage in class GPURenderBase

Returns:

true on successful write.

annotationVOIsUpdate

public void annotationVOIsUpdate(int value)

UpdateSceneRotation
```
protected void UpdateSceneRotation()
```
Description copied from class: GPURenderBase

Updates the displayed objects based on any user mouse rotation.

Overrides:

UpdateSceneRotation in class VolumeTriPlanarRenderBase

updateSceneNodePoint

public void updateSceneNodePoint(java.lang.String name,
                                 WildMagic.LibFoundation.Mathematics.Vector3f position)

Currently only being used to update the picking point

Parameters:: name - surface name; position - surface location

updateSlicesCenter

public void updateSlicesCenter(WildMagic.LibFoundation.Mathematics.Vector3f loc)

Update the bottom 3 planar view center

setCameraCenter
```
public void setCameraCenter(WildMagic.LibFoundation.Mathematics.Vector3f kCenter)
```
Update the camera in 3D view window.

Parameters:

kCenter - center in image space

addAnnotationPoint

public void addAnnotationPoint(WildMagic.LibFoundation.Mathematics.Vector3f point,
                               WildMagic.LibFoundation.Mathematics.Vector3f scannerPt)

Add the annotation point

Parameters:: point -

setCameraViewRotationDegree
```
public void setCameraViewRotationDegree(int degree)
```
Set camera view rotation degree

Parameters:

degree -

generatePath
```
public void generatePath()
```
Generate the path planning path.

clearPath
```
public void clearPath()
```
Clear the annotated path

createBranchPathGeometryScaled
```
private WildMagic.LibGraphics.SceneGraph.Polyline createBranchPathGeometryScaled(int iBranch)
```
Translate the path points from image coordinate to view volume coordinate.

Parameters:

iBranch -

Returns:

createAnnotatePoint
```
private void createAnnotatePoint(WildMagic.LibFoundation.Mathematics.Vector3f kPosition)
```
Create a new Annotation point at the position specified.

Parameters:

kPosition - position of new annotation point.

Class VolumeTriPlanarRender

Field Summary

Fields inherited from class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

Fields inherited from class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase

Fields inherited from class WildMagic.LibApplications.OpenGLApplication.JavaApplication3D

Fields inherited from class WildMagic.LibApplications.OpenGLApplication.JavaApplication

Constructor Summary

Method Summary

Methods inherited from class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

Methods inherited from class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase

Methods inherited from class WildMagic.LibApplications.OpenGLApplication.JavaApplication3D

Methods inherited from class WildMagic.LibApplications.OpenGLApplication.JavaApplication

Methods inherited from class WildMagic.LibApplications.OpenGLApplication.Application

Methods inherited from class java.lang.Object

Methods inherited from interface com.jogamp.opengl.GLEventListener

Methods inherited from interface java.awt.event.KeyListener

Methods inherited from interface java.awt.event.MouseListener

Methods inherited from interface java.awt.event.MouseMotionListener

Field Detail

serialVersionUID

m_kParent

configuredListener

rightMousePressed

altPressed

shiftPressed

m_kVOIInterface

animateStep

annotationPositions

annotationDiameters

annotationSpheres

annotationSpheresDisplay

annotationSpheresIndex

annotationVOIs

neuriteVOIs

neuriteSurfaces

neuriteDisplay

annotationSpheresColors

annotationAnimationPanel

annotationLabelsDisplay

annotationNames

sphereScale

neuriteNames

Constructor Detail

VolumeTriPlanarRender

VolumeTriPlanarRender

VolumeTriPlanarRender

VolumeTriPlanarRender

VolumeTriPlanarRender

VolumeTriPlanarRender

Method Detail

applySculpt

display

addConfiguredListener

dispose

setVOILatticeManager

clear3DSelection

annotationPrefix

doAutomaticLabels

is3DSelectionEnabled

isEditAnnotations

deleteSelectedPoint

moveSelectedPoint

hasSelectedPoint

keyPressed

keyReleased

mousePressed

mouseReleased

setDefaultCursor

select3DMarker

modify3DMarker

add3DMarker

add3DMarker

mouseDragged

processRightMouseDrag

setWindowLevel

undoSculpt

CreateScene

reCreateScene

Pick

PickVolume3D