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| − | === Volume 1, Basics ===
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| − | The <span style="font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline">''<font color="#000000">MIPAV</font>''</span> <span style="font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline">''<font color="#000000">User's Guide</font>''</span>, Volume 1, <span style="font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline">''<font color="#000000">Basics,</font>''</span> includes the following:
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| − | *Chapter 1, "[[Introducing MIPAV]]," presents an overview of the MIPAV software program.
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| − | *Chapter 2, "[[Installing MIPAV]]," explains how to install, remove, and upgrade the MIPAV software program. It also explains how to subscribe to the MIPAV mail list and how to search the MIPAV archive.
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| − | *Chapter 3, "[[Getting Started Quickly with MIPAV]]," explains how to use MIPAV to perform common functions, such as opening an image file, saving the file, and printing a log file.
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| − | *Chapter 4, "[[Understanding Image Basics]]," provides background information on image file formats. It also provides information on how to view and adjust image file attributes.
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| − | *Chapter 5, "[[Working with DICOM Images]]," explains how to access DICOM databases, perform queries, and retrieve image files. In addition, it explains how to send files to a database.
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| − | *Chapter 6 "[[Connecting to SRB BIRN]]" explains how to connect to SRB BIRN.
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| − | *Chapter 7, "[[Visualizing Images]]," provides instruction on how to customize the way image files are displayed, how to magnify and minify images, how to view images together, how to view a portion of the image, and how to change image brightness and contrast by generating histograms and adjusting color look-up tables (LUTs).
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| − | *Chapter 8, "[[Segmenting Images Using Contours and Masks]]," explains how to create, group, rearrange, and modify volumes of interest (VOIs); how to create masks; and how to use paint to further identify VOIs.
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| − | *Chapter 9, "[[Analyzing Images]]," discusses how to calculate statistics for VOIs and masks and how to generate intensity profiles, or graphs, for images.
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| − | *Chapter 10, "[[Changing Image Datasets Using MIPAV Utilities]] . . .," explains how to use the utilities included in the software.
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| − | *Chapter 11, "[[Using Scripts (Macros) in MIPAV]]," describes how to develop scripts, which you can use to customize the program.
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| − | *Chapter 12, "[[Developing Plug-in Programs]]," and Appendix D explain how to incorporate plug-in programs into MIPAV.
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| − | *Chapter 13, "[[Technical support]]" provides information about MIPAV technical support and also explains how to use the debug mode.
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| − | *Appendix A, "[[References]]," provides a list of references that can be used to learn more about MIPAV functions.
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| − | *Appendix B, "[[DICOM Conformance Statement]]," provides a copy of the formal DICOM Conformance Statement, which specifies MIPAV's service classes, information objects, communications protocols, and media storage application profiles.
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| − | *Appendix C, "[[Supported formats]]" lists graphical and file formats supported by MIPAV. It also provides examples of MIPAV system files (such as the preference file) and explains how the user can interpret them; provides limited instruction on how to modify specific files.
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| − | *Appendix D, "[[PluginAlgorithmMedian]]" gives an example of MIPAV plug in.
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| − | The guide also includes a glossary of terms and acronyms.
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| − | [[Volume 2, Algorithms]]
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