Visualizing Images: Displaying images using the triplanar-dual view

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Displaying images using the triplanar-dual view

The triplanar-dual view displays two image datasets (referred to as Image A and Image B) and a blended version of both Image A and Image B from three orthogonal planes.
To view image datasets using this view
1 Open two 3D or 4D images, which become known as Image A and Image B.
2 Load Image B into Image A.
3 Select Image > Views > Triplanar-Dual. The triplanar-dual view appears in an image window.
Figure 1. Image A, Image B, and Image B loaded into Image A

ExampleImageABLoaded.jpg


The image window for the triplanar-dual view is quite similar to the image window for the triplanar view. The File and Options menus contain the same commands except for one command-the Options menu for the triplanar view contains the command Link to Another TriImage. Since the triplanar-dual view shows two datasets in the image window and allows you to manipulate them together, linking to another image is not necessary. Most of the icons and buttons on the toolbars for both views are the same with one primary difference: The triplanar-dual view allows you to create VOIs on the images; the triplanar view does not.

Like the triplanar view, you can use the icons and buttons on the toolbar to change magnification, draw, change colors, change opacity, and apply a new intensity to selected voxels in the images.

Showing and hiding axes, cross hairs, and Talairach grid

By default, the triplanar-dual view automatically shows the axes and cross hairs on Image A, Image B, and the blended dataset.
To show or hide axes on images
To hide the axes, select Options > Show Axes (Figure 2). The check mark disappears from the check box in front of the command on the menu, and the axes disappear from all of the images.
Figure 2. Show Axes command on the Options menu in the Triplanar-Dual window

MenuOptionsShowAxes.jpg


To display the axes on the images again, simply select Options > Show Axes. The check mark reappears in the check box in front of the command.

To show or hide cross hairs
Showing or hiding cross hairs works just as showing or hiding axes. To hide the cross hairs, select Options > Show Cross Hairs. To show them, select Options > Show Cross Hairs again.
To show or hide the Talairach grid
By default, the Talairach grid does not automatically display on the images unless you specifically select it to do so. To show the grid, select Options > Show Talairach Grid. The grid appears on all of the images shown in the triplanar-dual view. When you want to hide the grid, select Options > Show Talairach Grid again.

Creating VOIs on images

You can create point or line VOIs on the images.
To create point VOIs
1 Click IconPoint.jpg .
2 Click in the image where you want to create a point.
3 Repeat steps 1 and 2 for all other desired points.
To draw line VOIs
1 Click IconDrawLineVOI.jpg .
2 Click in the image where the line should begin and drag the line to where it should end.
The numbers beneath the line indicate the length of the line in millimeters.
To change the line VOI, simply click on the VOI and then drag it to another position in the image.

File:MIPAV VisualizationTools169.gif


Note: You can only create one line VOI per orthogonal plane, although you can create a line VOI in each one of the three orthogonal planes.
To delete line VOIs
You cannot delete a line VOI. However, you can remove the display of the line VOI on the image. To do so, click IconTraverseImage.jpg . The line VOI disappears.

Figure 3. Triplanar-Dual window

WindowTriplanarDual.jpg

File
Close Frame-Closes this window.
Options
Show Axes-Displays the XY (top left), ZY (top right), and ZX (bottom left) axes on the images.
Show Cross Hairs-Displays the cross-hair lines on the images. When you move these lines on one image, it also moves to the corresponding points all of the other images.
Show Talairach Grid-Displays a Talairach (stereo tactic) grid on the images.
ButtonTraverseImage.jpg Traverse image
Aligns two images.
IconMagnify.jpg Magnify image 2.0x
Enlarges the images to twice their current size. It might be necessary to manually resize the window and use scroll bars to view all of the images.
IconMagnifyImage0.5x.jpg Magnify image 0.5x
Reduces the images to half of their current size.
IconOriginalMagnification.jpg Magnify image 1.0x
Restores the images to their original size.
IconDrawLineVOI.jpg Draw line VOI
Draw a line VOI.
IconCenterVolume.jpg Identify center of volume
Reassigns a new center to each dataset. The location that you select appears in the center of each image.
IconAlignmentTool.jpg Alignment tool
Allows you to apply a transformation matrix to an image dataset.
IconApply.jpg Applies rotations and translations
Applies the rotations and translations made to the images.
IconPoint.jpg Add point
Draws a point on an image. This point is only on the image you select.
IconNewVOI.jpg Initiate new VOI
Indicates that the next VOI is a new VOI rather than a change to the currently existing VOI.
IconDelete.jpg Delete point VOI
Removes the point VOI from the image.
IconCropVolume.jpg Identify crop volume
Displays the bounding box, which is outlined in red, on each image.
IconCropbutton.jpg Crops image delineated by the bounding cube
Displays in a separate image window only the area enclosed by the bounding box. When you click this icon, the Crop Image dialog box opens.
DialogboxCropImage.jpg
IconDrawBrush.jpg Draw using a brush
Allows you to draw with a brush on the image.
IconEyedropper.jpg Picks up a color from the image
Changes the color of the paint used to the color selected on the image.
IconPaintGrow.jpg Fills an area with desired color
Allows you to fill an area with color. When you select this icon, the Paint Grow dialog box opens.
IconErase.jpg Erases a portion of the image
Removes the paint from the specific spot that you select.
IconEraseAll.jpg Erase all paint
Removes all paint from all of the images.
IconSmallPoint.jpg Draw using small size
Indicates the size of the paint brush tip. Click this icon to paint one voxel each time the mouse button is clicked.
IconMediumPoint.jpg Draw using medium size
Indicates the size of the paint brush tip. Click this icon to paint 16 voxels (4 x 4 square) each time the mouse button is clicked.
IconLargePoint.jpg Draw using large size
Indicates the size of the paint brush tip. Click this icon to pain 100 voxels (10 x 10 square) each time the mouse button is clicked.
IconChangeIntensityLevel.jpg Change intensity level of paint
Allows you to change the intensity value of the paint. When you click this icon, the Desired Paint Intensity dialog box opens.

{| align="center"

DialogboxDesiredPaintIntensity.jpg





You can specify an intensity between -32,768 and 32,767. After you type an intensity level, the icon displays the level you entered.

|- |

IconChangePaintColor.jpg Change paint color

| rowspan="1" colspan="2" |

Changes the color of the paint used. This icon is often used in conjunction with the Draw icons. When you click this icon, the Pick Paint Color dialog box opens. After you change the color, this icon displays the color.

|- |

IconOpacity.jpg Opacity

| rowspan="1" colspan="2" |

Allows you to change the opacity of the paint. When you click this icon, the Paint Opacity dialog box opens.

{| align="center"

| DialogboxPaintOpacity.jpg

|}

|- |

IconCommit.jpg Changes image where painted

| rowspan="1" colspan="2" |

Permanently applies the intensity level to the images.

|- |

IconUndo.jpg Undo last region paint

| rowspan="1" colspan="2" |

Removes paint from the last area to which it was applied.

|- |

IconCalculateVolume.jpg Calculate volume of paint

| rowspan="1" colspan="2" |

Determines the volume, or number of pixels, in the painted area of the image.

|- |

RadiobuttonImageA.jpg Image A

| rowspan="1" colspan="2" |

Performs the action only on Image A.

|- |

RadiobuttonImageB.jpg Image B

| rowspan="1" colspan="2" |

Performs the action only on Image B.

|- |

RadiobuttonBoth.jpg Both

| rowspan="1" colspan="2" |

Performs the action on both Image A and Image B.

|}


To delete point VOIs
1 Click the first point on the image aligning the middle of the cursor with the center of the point.
2 Click IconDelete.jpg . The point disappears.
3 Repeat the first two steps for every point you want to delete.

Aligning the datasets

The Alignment Tool icon, IconAlignmentTool.jpg , allows you to create a new transformation matrix for the dataset.
1 Click IconAlignmentTool.jpg .
A closed angle appears on each of the images in the triplanar-dual view. On Image A, the angle is red; on Image B, it's yellow; on the blended image, the angle is green.
2 Move the cursor to the arrow on the thin line to the right, and align the cursor with the end of the arrow. At this time, the cursor should be a red cross.
Figure 159. Closed angle that appears on each of the images


{| align="center"

ExampleAngle2.jpg



|}


3 Change the size of the angle by dragging the arrow on the thin line up or down depending on the type of angle you want to create. The exact number of degrees appear on the left below the angle.
4 Release the mouse button when you reach the desired number of degrees.
Figure 160. Changing the angle by dragging the arrow on the thin line


{| align="center"

ExampleAngleDegrees.jpg



|}