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| − | ==== To show the splash screen ==== | + | == MIPAV splash screen == |
| | + | The ''splash screen'' is the window that first appears briefly when you start MIPAV. It appears immediately before the MIPAV window and the Output window open. The splash screen displays the name of the program and the MIPAV logo. |
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| − | <div style="font-style: normal; font-weight: normal; margin-bottom: 6pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> After hiding the splash screen, you may later decide to display it.<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 18pt; margin-right: 0pt; margin-top: 6pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 1 Select Help > Program Options. The MIPAV Options dialog box ([MIPAV_QuickStart.html#2176265 Figure 47]) opens.<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 18pt; margin-right: 0pt; margin-top: 6pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 2 Mark Display splash screen. A check mark appears in the check box.<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 18pt; margin-right: 0pt; margin-top: 6pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 3 Click Apply, and then click Close.<br /></font></div>
| + | By default, MIPAV always displays the splash screen on start-up unless you decide to hide it. To do so, you need to change the option in the MIPAV Options dialog box. |
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| − | After you quit MIPAV and then start it again, the splash screen appears. | + | === To hide the splash screen or prevent it from appearing on start-up === |
| | + | <ol> |
| | + | <li> Select Help > Program Options. The [[#MipavOptions | MIPAV Options]] dialog box opens.</li> |
| | + | <li> Clear the Display Splash Screen box.</li> |
| | + | <li> Click Close. After you quit MIPAV and then start it again, the splash screen doesn't appear.</li> |
| | + | </ol> |
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| − | <div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> | + | After hiding the splash screen, you may later decide to display it.<br /> |
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| − | {| border="1" cellpadding="5"
| + | === To show the splash screen === |
| − | |+ <div style="font-style: normal; margin-bottom: 3pt; margin-left: 0pt; margin-right: 0pt; margin-top: 9pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> Figure 46. The Display page in the MIPAV Options dialog<br /></font>'''</div>
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| − | <div class="CellBody"><span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">Display Splash screen</font>'''</span></div>
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| − | <div class="CellBody">Displays the MIPAV opening splash screen, or title screen, when MIPAV is started. By default, this check box is clear.</div>
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| − | <div style="font-style: normal; margin-bottom: 2pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> <br clear="all" />{| align="center" | [[Image:Display.jpg]] |}<br clear="all" /><br /></font>'''</div>
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| − | <div class="CellBody"><span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">Use platform-style File dialog boxes</font>'''</span></div>
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| − | <div class="CellBody">Uses the style of Open and Save dialog boxes that are provided with the operating system of your computer, rather than the MIPAV style. For more information, refer to [MIPAV_QuickStart.html#1013570 "Using platform-specific Open and Save dialog boxes" on page 74]. By default, this check box is clear.</div>
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| − | <div class="CellBody"><span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">Show Scripting toolbar</font>'''</span></div>
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| − | <div class="CellBody">Shows the Scripting toolbar, which you can use to create and run scripts, in the MIPAV window. By default, this check box is clear.</div>
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| − | <div class="CellBody"><span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">Show Paint toolbar</font>'''</span></div>
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| − | | rowspan="1" colspan="2" |
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| − | <div class="CellBody">Shows the Paint toolbar, which allows you to paint directly on images. By default, this check box is clear.</div>
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| − | <div class="CellBody"><span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">Show Paint border</font>'''</span></div>
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| − | | rowspan="1" colspan="2" |
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| − | <div class="CellBody">Shows a border around the painted area. By default, this check box is clear.</div>
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| − | <div class="CellBody">Snap paint cursor to pixels</div>
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| − | <div class="CellBody">Causes the paint cursor to snap to the nearest pixel.</div>
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| − | <div class="CellBody"><span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">Recently used image list</font>'''</span></div>
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| − | | rowspan="1" colspan="2" |
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| − | <div class="CellBody">Specifies the number of recently displayed images that appear near the bottom of the File menu on the MIPAV window. To open a recently displayed image, simply select the image on the File menu.</div> <div class="CellBody">The number of images that can be displayed can be from 2 to 9. By default, the number of images displayed on the File menu is 4.</div>
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| − | <div class="CellBody"><span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">Crosshair cursor color</font>'''</span></div>
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| − | <div class="CellBody">Specifies the color of the crosshair cursor. You can choose from several colors and styles. By default, the color is set to "Default."</div>
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| − | <div class="CellBody"><span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">Active image border color</font>'''</span></div>
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| − | <div class="CellBody">Specifies the color of the border around images. When you click on this box, the Pick Active Color dialog box, which allows you to select a different color, opens.</div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> <br clear="all" />{| align="center"
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| − | [[Image:dialogboxPickActiveColor.jpg]]
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| − | |}<br clear="all" /><br /></font></div> <div class="CellBody">By default, the color is red.</div>
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| − | <div class="CellBody"><span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">VOI draw color</font>'''</span></div>
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| − | <div class="CellBody">Allows you to choose the color that is used to draw VOIs. After you finish drawing VOIs, the completed VOIs appear in the Starting VOI color.</div>
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| − | <div class="CellBody"><span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">Starting VOI color</font>'''</span></div>
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| − | <div class="CellBody">Allows you to select the initial color for completed VOIs. That is, when you draw VOIs, they appear in the color chosen for VOI draw color; the completely drawn VOIs appear in the color you selected for this field.</div>
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| − | <div class="CellBody"><span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">Apply</font>'''</span></div>
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| − | | rowspan="1" colspan="2" |
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| − | <div class="CellBody">Saves and immediately applies all of the selected parameters in this dialog box.</div>
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| − | <div class="CellBody"><span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">Cancel</font>'''</span></div>
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| − | <div class="CellBody">Disregards any changes you made in this dialog box, closes the dialog box, and does not save the specified options.</div>
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| − | <div class="CellBody"><span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">Help</font>'''</span></div>
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| − | | rowspan="1" colspan="2" |
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| − | <div class="CellBody">Displays online help for this dialog box</div>
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| − | <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> | + | <ol> |
| | + | <li> Select Help > Program Options. The [[#MipavOptions | MIPAV Options]] dialog box opens.</li> |
| | + | <li>Mark Display splash screen. A check mark appears in the check box.</li> |
| | + | <li>Click Apply, and then click Close. After you quit MIPAV and then start it again, the splash screen appears.</li> |
| | + | </ol> |
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| − | {| border="1" cellpadding="5"
| + | == See also: == |
| − | |+ <div style="font-style: normal; margin-bottom: 3pt; margin-left: 0pt; margin-right: 0pt; margin-top: 9pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> Figure 47. The File page in the MIPAV Options dialog box <br /></font>'''</div>
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| − | <div class="CellBody"><span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">Prompt overwrite on save</font>'''</span></div>
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| − | <div class="CellBody">Displays a prompt, or message, when you save a file under the same name as an already existing file. The message indicates that saving the file under the same name as an existing file overwrites the file.</div>
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| − | <div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> <br clear="all" />{| align="center"
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| − | [[Image:File.jpg]]
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| − | |}<br clear="all" /><br /></font></div>
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| − | <div class="CellBody"><span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">Save all on save</font>'''</span></div>
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| − | <div class="CellBody">Saves the active image and all VOIs presently displayed on the image so that the next time you open the image MIPAV opens the image and VOIs. The VOIs are saved in a subdirectory of the directory in which the image is stored.</div> <div class="CellBody"> By default, this check box is clear.</div>
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| − | <div class="CellBody"><span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">Save dialog settings</font>'''</span></div>
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| − | <div class="CellBody">Saves the settings you specified on algorithm dialog boxes so that the next time you use the algorithms, your specific settings override the default settings.</div> <div class="CellBody">By default, this check box is clear.</div>
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| − | <div class="CellBody"><span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">Save XML header with Analyze images</font>'''</span></div>
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| − | <div class="CellBody">Saves an XML header for an Analyze image when the image is saved. If you choose this option, the image has two headers: the normal header and an XML header. Both point to the image file.</div> <div class="CellBody">By default, this check box is clear.</div>
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| − | <div class="CellBody"><span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">Save thumbnails for XML files</font>'''</span></div>
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| − | <div class="CellBody">Saves a thumbnail image in the XML header, allowing you to view the thumbnails in the image browser</div>
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| − | <div class="CellBody"><span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">Compress image in zip format when saved as XML</font>'''</span></div>
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| − | <div class="CellBody">Compresses images in a zip format when they are saved in XML format. When an image is saved in XML format, MIPAV produces a RAW file that describes the image and an XML file that includes image attributes. When you select this check box, MIPAV compresses only the RAW file, which compensates for the size of the RAW file.</div> <div class="CellBody">By default, this check box is clear.</div>
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| − | <div class="CellBody">Default frame rate for Save-image-as AVI</div>
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| − | <div class="CellBody">Specifies the default frame rate in frames per second for images that are saved as AVI.</div> <div class="CellBody">By default, this check box is clear. If you select this option, the default frame rate is 10.0.</div>
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| − | <div class="CellBody"><span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">File filter default</font>'''</span></div>
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| − | <div class="CellBody">Specifies the types of files that should be shown in the Files of type box in the Open Image and Save Image as dialog boxes. Refer to [MIPAV_QuickStart.html#2183666 "Choosing the default file types to display or save" on page 79] for more information. </div>
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| − | <div class="CellBody"><span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">Apply</font>'''</span></div>
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| − | <div class="CellBody">Saves and immediately applies all of the selected parameters in this dialog box.</div>
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| − | <div class="CellBody"><span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">Cancel</font>'''</span></div>
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| − | <div class="CellBody">Disregards any changes you made in this dialog box, closes the dialog box, and does not save the specified options.</div>
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| − | <div class="CellBody"><span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">Help</font>'''</span></div>
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| − | <div class="CellBody">Displays online help for this dialog box</div>
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| − | <br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000"> {| border="1" cellpadding="5" |+ <div style="font-style: normal; margin-bottom: 3pt; margin-left: 0pt; margin-right: 0pt; margin-top: 9pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> Figure 48. The Other page in the MIPAV Options dialog box <br /></font>'''</div> |- | <div class="CellBody">Save dialog settings</div> | <div class="CellBody">Saves the active dialog box settings in a log file.</div> | rowspan="2" colspan="1" | <div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 1pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> <br clear="all" />{| align="center" | [[Image:MIPAVHistoryRecording.jpg]] |}<br clear="all" /><br /></font></div> |- | <div class="CellBody"><span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">Global data provenance</font>'''</span></div> | <div class="CellBody">Keeps a global record of all of the actions-algorithms and utilities-performed on images. The history may be viewed in the <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">MIPAV system data provenance</font>'''</span> dialog box.</div> <div class="CellBody">By default, this check box is clear.</div> |- | <div class="CellBody">Image level data provenance</div> | rowspan="1" colspan="2" | <div class="CellBody">Keeps a record of all of the actions-algorithms and utilities-performed on images. The history may be viewed in the <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">Image data provenance </font>'''</span>dialog box while the actions are performed, or in the XML file when an image is saved to an XML file.</div> <div class="CellBody">By default, this check box is clear.</div> |- | <div class="CellBody"><span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">LAX/Preferences memory check</font>'''</span></div> | rowspan="1" colspan="2" | <div class="CellBody">Enables MIPAV developers to debug the program. If you experience problems with the program, you may be asked to select this check box.</div> <div class="CellBody"><span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">Recommendation: </font>'''</span>Do not select this check box unless otherwise instructed by MIPAV development. By default, this check box is clear.</div> |- | <div class="CellBody"><span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">Check on closing frame?</font>'''</span></div> | rowspan="1" colspan="2" | <div class="CellBody">Adds messages to confirm deletions of images. By default, this check box is clear. </div> |- | <div class="CellBody">Log errors to:</div> | rowspan="1" colspan="2" | <div class="CellBody">Allows you to select the file in which MIPAV records any errors that occur. By default MIPAV logs errors to C:\Program Files\mipav\mipav.log unless the name and path of the log file was changed during installation.</div> |- | <div class="CellBody">Debug levels: Minor</div> | rowspan="1" colspan="2" | <div class="CellBody">Records only minor error messages in mipav.log.</div> |- | <div class="CellBody">Debug levels: Algorithm</div> | rowspan="1" colspan="2" | <div class="CellBody">Records only error messages with algorithms in mipav.log.</div> |- | <div class="CellBody">Debug levels: FileIO</div> | rowspan="1" colspan="2" | <div class="CellBody">Records only FileIO (file input and output) error messages in mipav.log.</div> |- | <div class="CellBody">Debug levels: Comms</div> | rowspan="1" colspan="2" | <div class="CellBody">Records only error messages involving communications in mipav.log.</div> |- | <div class="CellBody">Debug levels: Scripts</div> | rowspan="1" colspan="2" | <div class="CellBody">Records all error messages in mipav.log.</div> |- | <div class="CellBody"><span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">Apply</font>'''</span></div> | rowspan="1" colspan="2" | <div class="CellBody">Saves and immediately applies all of the selected parameters in this dialog box.</div> |- | <div class="CellBody"><span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">Cancel</font>'''</span></div> | rowspan="1" colspan="2" | <div class="CellBody">Disregards any changes you made in this dialog box, closes the dialog box, and does not save the specified options.</div> |- | <div class="CellBody"><span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">Help</font>'''</span></div> | rowspan="1" colspan="2" | <div class="CellBody">Displays online help for this dialog box.</div> |} </font>'''</span><br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000">
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| − | <div class="CellBody">A version of Jargon API library, which should be used to communicate to the SRB server. Select one from the list;</div>
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| − | [[Image:MIPAV_optionsSRB_Tab.jpg]]
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| − | |}<br clear="all" /><br /></font></div>
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| − | <div style="font-style: normal; margin-bottom: 6pt; margin-left: 6pt; margin-right: 6pt; margin-top: 6pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> Transfer Mode<br /></font>'''</div>
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| − | <div class="CellBody">Parallel or sequential specifies the file transfer protocol. There are SRB parallel transfer protocol and SRB sequential transfer protocol available;</div>
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| − | <div style="font-style: normal; margin-bottom: 6pt; margin-left: 6pt; margin-right: 6pt; margin-top: 6pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> Temporary Directory<br /></font>'''</div>
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| − | <div class="CellBody">Is your local directory, where you keep your files which need to be transferred FROM or TO the SRB server.</div> <div class="CellBody">See also [MIPAV_ConnectingToSRBBIRN.html#1253667 "Connecting to SRB BIRN" ].</div>
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| − | <div style="font-style: normal; margin-bottom: 6pt; margin-left: 6pt; margin-right: 6pt; margin-top: 6pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> Apply<br /></font>'''</div>
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| − | <div class="CellBody">Saves and immediately applies all of the selected parameters in this dialog box.</div>
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| − | <div style="font-style: normal; margin-bottom: 6pt; margin-left: 6pt; margin-right: 6pt; margin-top: 6pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> Cancel<br /></font>'''</div>
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| − | <div class="CellBody">Disregards any changes you made in this dialog box, closes the dialog box, and does not save the specified options.</div>
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| − | <div style="font-style: normal; margin-bottom: 6pt; margin-left: 6pt; margin-right: 6pt; margin-top: 6pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> Help<br /></font>'''</div>
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| − | <div class="CellBody">Displays online help for this dialog box.</div>
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| − | <br /></font></div><div style="font-style: normal; margin-bottom: 3pt; margin-left: 0pt; margin-right: 0pt; margin-top: 9pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> Figure 49. The SRB tab<br /></font>'''</div>
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| − | === Using platform-specific Open and Save dialog boxes ===
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| − | <div style="font-style: normal; font-weight: normal; margin-bottom: 6pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> By default, MIPAV uses its own version of Open and Save dialog boxes, which provide you with the ability to assign aliases, or shortcuts, to frequently used images. Aliases make it easy to locate images, a feature that may be attractive if you work with the same images for a period of time. However, you may prefer instead to use the style of Open and Save dialog boxes that are provided with the operating system of your computer. To do so, you need to select the Use platform-style File dialog boxes check box in the MIPAV Options dialog box. See [MIPAV_QuickStart.html#1994088 Figure 50 on page 75].<br /></font></div>
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| − | If this check box is selected and your computer is running Microsoft Windows, MIPAV displays the Windows style of Open and Save dialog boxes. If you use a Sun terminal, when this check box is selected, MIPAV displays the standard Unix-style Open and Save dialog boxes. On Apple MacIntosh computers, MIPAV displays dialog boxes that are standard with that operating system.
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| − | <div style="font-style: normal; margin-bottom: 6pt; margin-left: 0pt; margin-right: 0pt; margin-top: 14pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">To use platform-specific dialog boxes</font>'''</span><br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 18pt; margin-right: 0pt; margin-top: 6pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 1 Select Help > Program Options. The MIPAV Options dialog box opens. See [MIPAV_QuickStart.html#1994088 Figure 50 on page 75].<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 18pt; margin-right: 0pt; margin-top: 6pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 2 Mark <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">Use Platform-Style File Dialog Boxes</font>'''</span>. A check mark appears in the check box.<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 18pt; margin-right: 0pt; margin-top: 6pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 3 Click Apply, then click Close. The dialog box closes.<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000">
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| − | <div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> <br clear="all" />{| align="center"
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| − | [[Image:UsePlatformStyleDialogBoxes.jpg]]
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| − | === Debugging MIPAV ===
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| − | You can track debugging information and error messages generated by MIPAV during a session by placing it in debug mode. If errors occur during the session, the program displays any error messages in the Output window on the Debug page. By default, the debug mode is off when you start the program.
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| − | <div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 5pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">Recommendation:</font>'''</span> The debugging information is primarily intended for MIPAV developers and not for users. The best course for a user is to leave the debug mode <span style="font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline">''<font color="#000000">Off </font>''</span>unless a MIPAV developer asks for he/she to turn it on.<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 5pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> For more information about MIPAV debug mode, please refer to [MIPAVTroubleShooting.html#1337667 "Troubleshooting" ], [MIPAVTroubleShooting.html#1337690 "Placing MIPAV in debug mode" on page 558].<br /></font></div>
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| − | === Saving a history of actions on images (TBD) ===
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| − | <div style="font-style: normal; font-weight: normal; margin-bottom: 6pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> MIPAV allows you to keep a history of all of the actions-the algorithms and utilities-that you perform on images. The history includes the specific parameters that were set for the action. In addition, if you save the images as XML, the history of actions and their parameters appears in the dataset attributes section near the beginning of the MIPAV header file (the XML file). Each action appears between the <HISTORY> and </HISTORY> tags.<br /></font></div>
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| − | By default, MIPAV does <span style="font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline">''<font color="#000000">not </font>''</span>record a history of actions unless you specifically select the Record history check box in the MIPAV Options > Other dialog box. TBD.
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| − | <div style="font-style: normal; margin-bottom: 6pt; margin-left: 0pt; margin-right: 0pt; margin-top: 14pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> To record a history of actions taken on images TBD<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 18pt; margin-right: 0pt; margin-top: 6pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 1 Select Help > Program Options in the MIPAV window. The MIPAV Options dialog box appears.<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 18pt; margin-right: 0pt; margin-top: 6pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 2 Mark Record history. A check mark appears in the check box.<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 18pt; margin-right: 0pt; margin-top: 6pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 3 Click Apply. From this point on, MIPAV records the actions performed on all images until you clear the Record history check box.<br /></font></div>
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| − | Refer to [MIPAV_QuickStart.html#2183598 Figure 51] and [MIPAV_QuickStart.html#2274000 "To view the history of actions recorded in the XML file TBD" on page 78].
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| − | <div style="font-style: normal; margin-bottom: 6pt; margin-left: 0pt; margin-right: 0pt; margin-top: 14pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> To view the history of actions as they are performed<br /></font>'''</div>
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| − | The History page in the Image Attributes dialog box allows you to view the list of actions <span style="font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline">''<font color="#000000">immediately</font>''</span> after they are performed.
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| − | The following example illustrates how to do this:
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| − | <div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 18pt; margin-right: 0pt; margin-top: 6pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 1 Make sure that the Record History check box was selected in the MIPAV Options dialog box.<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 18pt; margin-right: 0pt; margin-top: 6pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 2 Open a sample image.<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 18pt; margin-right: 0pt; margin-top: 6pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 3 Select Image > Attributes > Edit attributes. The Image Attributes dialog box opens.<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 18pt; margin-right: 0pt; margin-top: 6pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 4 Select History. The History page appears.<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 18pt; margin-right: 0pt; margin-top: 6pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 5 Click the image to make it the active window.<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 18pt; margin-right: 0pt; margin-top: 6pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 6 Select Utilities > Flip > Horizontal. The image is flipped horizontally, and the words "Flip(Y_AXIS)" appear on the History page in the Image Attributes dialog box.<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 18pt; margin-right: 0pt; margin-top: 6pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 7 Perform other actions on the image, such as algorithms or other utilities. Note that these actions appear on the History page.<br /></font></div>
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| − | You can type directly onto the History page of the Image Attributes dialog box, letting you add comments to the history, which you can save and print.
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| − | <div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000">
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| − | <div style="font-style: normal; margin-bottom: 1pt; margin-left: 0pt; margin-right: 0pt; margin-top: 17pt; text-align: center; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> Under What Circumstances Do Actions Fail to Appear on the History Page?<br /></font>'''</div> <div class="CellBody">If MIPAV is fully operational, actions performed on an image always appear on the History page of the Image Attributes dialog box and in the XML file for that image. However, it's important to know whether the actions were performed on the <span style="font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline">''<font color="#000000">original image</font>''</span> or on the <span style="font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline">''<font color="#000000">replacement image.</font>''</span></div> <div class="CellBody">{| align="left"
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| − | [[Image:exampleNewReplaceImage.jpg]]
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| − | |}Several algorithms and utilities offer a choice of either generating a new image (New image check box) or replacing the original image (Replace image check box). If you choose New image and want to see the actions performed on that image, you must select Image > Attributes > Edit Attributes to open an Image Attributes dialog box for the new image. If, however, you select Replace image, the History page on the Image Attributes dialog box for the original image displays the actions.</div> <div class="CellBody">To illustrate this point, open a sample image; select Image > Attributes > Edit Attributes to display the Image Attributes dialog box; and select History to display the History page. Perform an action such as Utilities > Image Margins, mark New image in the dialog box, and then click OK. Notice that the action does not appear on the History page. Click on the new image; select Image > Attributes > Edit Attributes; and select History. The History page shows the AddImageMargins action for the new image.</div>
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| − | <br /></font></div><div style="font-style: normal; margin-bottom: 6pt; margin-left: 0pt; margin-right: 0pt; margin-top: 14pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> To view the history of actions recorded in the XML file TBD<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 18pt; margin-right: 0pt; margin-top: 6pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 1 Save the sample image as an XML file by selecting File > Save Image as. The Save Image as dialog box opens.<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 18pt; margin-right: 0pt; margin-top: 6pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 2 Select the directory where you want to save the file in the Save in box.<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 18pt; margin-right: 0pt; margin-top: 6pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 3 Type the name of the file-use "SampleImage" as the file name-and type an ".xml" file extension in the File Name box so that the complete file name is "SampleImage.xml."<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 18pt; margin-right: 0pt; margin-top: 6pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 4 Click Save.<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 18pt; margin-right: 0pt; margin-top: 6pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 5 Open Windows Explorer by right-clicking on Start and then selecting Explore. The Windows Explorer window opens.<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 18pt; margin-right: 0pt; margin-top: 6pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 6 Navigate to the directory where you stored the XML file. This directory should have two files named "SampleImage": "SampleImage.raw" and "SampleImage.xml." <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 18pt; margin-right: 0pt; margin-top: 6pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 7 Double-click "SampleImage.xml." An internet browser page, such as Internet Explorer or Mozilla, appears displaying an XML page.<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 18pt; margin-right: 0pt; margin-top: 6pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Notice that, immediately after the <Dataset-attributes> tag, the following line appears: <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 36pt; margin-right: 0pt; margin-top: 6pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> <History>Flip(Y_AXIS)</History><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 18pt; margin-right: 0pt; margin-top: 6pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Each action that you perform on the image appears between its own <History> and </History> tags. See also [MIPAV_QuickStart.html#2183598 Figure 51].<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000">
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| − | |+ <div style="font-style: normal; margin-bottom: 3pt; margin-left: 0pt; margin-right: 0pt; margin-top: 9pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> Figure 51. The Record History check box is located in the MIPAV Options dialog box > Other tab. Actions recorded are shown in the header of open XML file. TBD<br /></font>'''</div>
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| − | [[Image:RecordHistoryCheckBox.jpg]]
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| − | [[Choosing the default file types to display or save]]
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By default, MIPAV always displays the splash screen on start-up unless you decide to hide it. To do so, you need to change the option in the MIPAV Options dialog box.
After hiding the splash screen, you may later decide to display it.
