Difference between revisions of "TRE Scripts"

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(Created page with 'Sample Script: DespotT1( "despot_TR double 5.0", "irspgr_TR double 5.0", "irspgr_Ky double 80.0", "irspgr_FA double 5.0", "max_T1 double 5000.0", "max_Mo double 10000.0", ...')
 
 
(3 intermediate revisions by the same user not shown)
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Sample Script:
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Hifi w/350,450,4,19
DespotT1(
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"despot_TR double 5.0",  
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"irspgr_TR double 5.0",  
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"irspgr_Ky double 80.0",
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"irspgr_FA double 5.0",
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"max_T1 double 5000.0",
+
"max_Mo double 10000.0",  
+
  
"despot_FA list_double 4.0,19.0",
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*despot_TR double 5.0
"irspgr_Tr list_double 715.0,805.0",  
+
*irspgr_TR double 5.0
"irspgr_TI list_double 315.0,405.0",
+
*irspgr_Ky double 80.0  
 +
*irspgr_FA double 5.0,  
 +
*max_T1 double 5000.0,  
 +
*max_Mo double 10000.0  
  
"spgr_Data list_double 15.0,13.0",  
+
*despot_FA list_double 4.0,19.0,  
"irspgr_Data list_double 3.0,7.0",  
+
*irspgr_Tr list_double 715.0,805.0,
 +
*irspgr_TI list_double 315.0,405.0,  
  
"scale double 0.0",  
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*spgr_Data list_double 15.0,13.0,  
"point_Scale double 0.0",  
+
*irspgr_Data list_double 3.0,7.0,  
"scale_Increment double 0.0",  
+
  
"spgr_Image_Index list_int 3,1",  
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*scale double 0.0,  
"irspgr_Image_Index list_int 0,2",  
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*point_Scale double 0.0,  
"b1_Image_Index int 0",  
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*scale_Increment double 0.0,  
  
"angle_Increment double 0.0",  
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*spgr_Image_Index list_int 3,1,  
"Nsa int 2",  
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*irspgr_Image_Index list_int 0,2,  
"Nti int 2",  
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*b1_Image_Index int 0,  
  
"max_Angle double 20.0",  
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*angle_Increment double 0.0,  
"smooth_B1_Field boolean true",  
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*Nsa int 2,
 +
*Nti int 2,  
  
"perform_Straight_DESPOT1 boolean false",  
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*max_Angle double 20.0,  
"perform_DESPOT1_with_PreCalculatedB1Map boolean false",
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*smooth_B1_Field boolean true  
"perform_DESPOT1_HIFI boolean true",
+
  
"double_Inversion boolean true",  
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*perform_Straight_DESPOT1 boolean false,  
"single_Inversion boolean false",  
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*perform_DESPOT1_with_PreCalculatedB1Map boolean false,
 +
*perform_DESPOT1_HIFI boolean true,  
  
"ge_Scanner boolean true",  
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*double_Inversion boolean true,  
"siemens_Scanner boolean false",
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*single_Inversion boolean false,  
"three_T_Field boolean true",
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"one_five_TField boolean false",
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"calculate_T1 boolean true",
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"show_B1_Map boolean true",
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"calculate_Mo boolean false",
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"invert_T1_to_R1 boolean false",
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"use_Weights boolean true",
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"uniform_Angle_Spacing boolean true",
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"upper_Left_Corner boolean true",
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"upper_Right_Corner boolean false",
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"lower_Left_Corner boolean false",
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"lower_Right_Corner boolean false",
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"use_Smart_Thresholding boolean false",
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"use_Hard_Thresholding boolean true",
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"noise_Scale float 4.0",
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"hard_Noise_Threshold float 2.0",
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"number_of_input_images int 4",  
+
  
"despot1-tr77_fa5_ir350 ext_image $image3",  
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*ge_Scanner boolean true,  
"despot1-tr77_fa19 ext_image $image4",  
+
*siemens_Scanner boolean false,  
"despot1-tr77_fa5_ir450 ext_image $image5",  
+
*three_T_Field boolean true,  
"despot1-tr77_fa4 ext_image $image6",  
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*one_five_TField boolean false,
 +
*calculate_T1 boolean true,
 +
*show_B1_Map boolean true,
 +
*calculate_Mo boolean false,
 +
*invert_T1_to_R1 boolean false,
 +
*use_Weights boolean true,
 +
*uniform_Angle_Spacing boolean true,
 +
*upper_Left_Corner boolean true,
 +
*upper_Right_Corner boolean false,
 +
*lower_Left_Corner boolean false,
 +
*lower_Right_Corner boolean false,
 +
*use_Smart_Thresholding boolean false
 +
*use_Hard_Thresholding boolean true,
 +
*noise_Scale float 4.0,
 +
*hard_Noise_Threshold float 2.0,
 +
*number_of_input_images int 4,  
  
"do_output_new_image boolean true")
+
*despot1-tr77_fa5_ir350 ext_image $image3,
 +
*despot1-tr77_fa19 ext_image $image4,
 +
*despot1-tr77_fa5_ir450 ext_image $image5,
 +
*despot1-tr77_fa4 ext_image $image6,
 +
 
 +
*do_output_new_image boolean true)

Latest revision as of 17:59, 28 June 2010

Hifi w/350,450,4,19

  • despot_TR double 5.0
  • irspgr_TR double 5.0
  • irspgr_Ky double 80.0
  • irspgr_FA double 5.0,
  • max_T1 double 5000.0,
  • max_Mo double 10000.0
  • despot_FA list_double 4.0,19.0,
  • irspgr_Tr list_double 715.0,805.0,
  • irspgr_TI list_double 315.0,405.0,
  • spgr_Data list_double 15.0,13.0,
  • irspgr_Data list_double 3.0,7.0,
  • scale double 0.0,
  • point_Scale double 0.0,
  • scale_Increment double 0.0,
  • spgr_Image_Index list_int 3,1,
  • irspgr_Image_Index list_int 0,2,
  • b1_Image_Index int 0,
  • angle_Increment double 0.0,
  • Nsa int 2,
  • Nti int 2,
  • max_Angle double 20.0,
  • smooth_B1_Field boolean true
  • perform_Straight_DESPOT1 boolean false,
  • perform_DESPOT1_with_PreCalculatedB1Map boolean false,
  • perform_DESPOT1_HIFI boolean true,
  • double_Inversion boolean true,
  • single_Inversion boolean false,
  • ge_Scanner boolean true,
  • siemens_Scanner boolean false,
  • three_T_Field boolean true,
  • one_five_TField boolean false,
  • calculate_T1 boolean true,
  • show_B1_Map boolean true,
  • calculate_Mo boolean false,
  • invert_T1_to_R1 boolean false,
  • use_Weights boolean true,
  • uniform_Angle_Spacing boolean true,
  • upper_Left_Corner boolean true,
  • upper_Right_Corner boolean false,
  • lower_Left_Corner boolean false,
  • lower_Right_Corner boolean false,
  • use_Smart_Thresholding boolean false
  • use_Hard_Thresholding boolean true,
  • noise_Scale float 4.0,
  • hard_Noise_Threshold float 2.0,
  • number_of_input_images int 4,
  • despot1-tr77_fa5_ir350 ext_image $image3,
  • despot1-tr77_fa19 ext_image $image4,
  • despot1-tr77_fa5_ir450 ext_image $image5,
  • despot1-tr77_fa4 ext_image $image6,
  • do_output_new_image boolean true)