Swap slices and swap volumes

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Background

Both Swap Slices and Swap Volumes allow the user to select slices and volumes and to insert selected slices\volumes into different locations in the image.

Why swap slices\volumes?

In [DTI Pipeline|DTI scanning]] B0 volume (the volume made without a b pulse) is used for creating a whole-brain mask, which is used to determine which voxels to include into analysis. For most of MRI scanners B0 is either the fist or the last recorded volume, but some scanners put B0 is some different places. The easiest way to move B0 volume to the beginning or to the end of the image is by using the Swap Volumes tool.


Swap Slices

The Swap Slices tool is available via Utilities > 3D Slice Tools > Swap Slice menu. The tool is available for use in both 3D and 4 D images.


Comment

Help needs to be created so that user can understand the interface, the scripting parameters, and the result images.

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