Supported file formats
From MIPAV
MIPAV supports read/write access in a number of different file-formats, and can read still others. A handful are MIPAV-specific, but most are standard file formats or are generated by different imaging software. Not only does MIPAV support a number of medical image data formats, it also supports some general purpose formats -- very helpful when making presentations!
| File Format | Extension | Open | Save |
|---|---|---|---|
| Adobe Photoshop | PSD | Yes | Yes |
| AFNI | BRIK, HEAD | Yes | Yes (1) |
| Analyze | IMG | Yes | Yes |
| Audio/Video Interleave | AVI | Yes | Yes (2) |
| BIORAD | PIC | Yes | No |
| Bruker | 2dseq | Yes | No |
| Cheshire | IMG, IMC | Yes | Yes |
| DICOM 3.0 | DCM, IMA | Yes | Yes |
| FITS | FTS | Yes | Yes |
| FreeSurfer Image | COR | Yes | No |
| FreeSurfer Image | MGH | Yes | Yes |
| FreeSurfer Image | MGZ | Yes | Yes |
| FreeSurfer Surface | ASC | Yes | No |
| GE-Genesis 4X, 5x and LX | SIG | Yes | No |
| Graphics Interchange Format | GIF | Yes | No |
| Image Cytometry Standard | ICS | Yes | Yes |
| InterFile | HDR | Yes | Yes |
| Joint Photographics Experts Group | JPEG, JFIF, JPG, JFI | Yes | Yes |
| Macintosh PICT | PICT | Yes | Yes |
| Medical Image Network Common Data Form | MNC | Yes | Yes |
| MICRO-CAT | LOG | Yes | Yes |
| MIPAV Image | XML | Yes | Yes |
| MIPAV Lookup Table | LUT | Yes | Yes |
| MIPAV Transformation Matrix | MTX | Yes | Yes |
| MIPAV Graph | PLT | Yes | Yes |
| MIPAV Volume Of Interest | XML, VOI | Yes | Yes |
| MIPAV Text Annotation | LBL | Yes | Yes |
| Medican Research Council | MRC | Yes | No |
| Microsoft Windows Bitmap | BMP, DIB | Yes | Yes |
| netCDF and masks | CDF | Yes | Yes |
| Philips PARREC | REC, FREC | Yes | No |
| PC Paintbrush | PCX, DCX, PCC | Yes | Yes |
| PICT | PICT | Yes | Yes |
| Portable Network Graphic | PNG | Yes | Yes |
| QuickTime | MOV, QT | Yes | Yes |
| Raw | RAW | Yes | Yes |
| Siemens-Magnetom Vision | IMA | Yes | Yes |
| Sun Raster | RS, RAS | Yes | Yes |
| Tagged Image File Format | TIFF, TIF | Yes | Yes |
| Truevision Graphics Adapter | TGA, VST, VDA, ICB, TPIC | Yes | Yes |
| XBitMap | XBM | Yes | Yes |
| XPixMap | XPM | Yes | Yes |
| Zeiss-TIFF Topography (LSM 510/LSM 5) | LSM | Yes | No |
(1) MIPAV does not save extra information with the AFNI file. It only does the "bare minimum".
(2) AVIs are saved with encoding options:
- Run-length
- MPEG
- MPEG-4
- QuickTime
AVI support within MIPAV requires the Java Media Framework, which is installed with MIPAV.
