Supported algorithms

Note: Many of these algorithms are implemented for both monochromatic and RGB images

• Autocorrelation coefficients
• Autocovariance coefficients
• Brain tools
  • Face de-identification
  • Extract brain surface (BET)
  • Extract Brain surface (BSE)
• Density based clustering
• Edge detection
• Extract surface (marching cubes)
• Filtering
  • FFT
    • Gaussian filter
    • Butterworth
    • Highpass
    • Lowpass
    • Bandpass
  • Filters (frequency)
  • Filters (Gabor)
  • Filters (homomorphic)
  • Filters (spatial)
    • Adaptive histogram equalization
    • Regional (for speed)
    • Neighborhood (for precision)
    • Anisotropic diffusion
    • Coherence enhancing diffusion
    • Gaussian blurring
    • Gradient magnitude
    • Laplacian
    • Mean
    • Median
    • Mode
    • Non-linear noise reduction
    • Nonmaximum supression
    • Regularized isotopic diffusion
    • Slice averaging
    • Unsharp mask
  • Filters (wavelet)
• Histogram Tools
  • 2D Histogram
  • Histogram equalization
    • Neighbourhood adaptive
    • Regional adaptive
  • Histogram matching
  • Histogram summary
• Insight toolkit (ITK)
  • Gaussian blur
• Microscopy
  • Colocalization
    • Expectation maximization
    • Orthogonal regression
  • FRAP
  • FRET
  • FRET bleedthru
  • FRET efficiency
  • Subtract VOI background
  • Restoration
    • XCOSM_EM
    • Maximum likelihood Iterative blind deconvulution
• Principal Component
• Registration
  • Align patient position
  • B-spline automatic registration 2D/3D
  • B-spline automatic registration 2.5D
  • Constrained optimized automatic registration
  • Display pixel similarity cost functions
  • Landmark
    • Least squares
    • Thin-plate spline
  • Manual 2D series
  • Mosaic
  • Optimized automatic registration
  • Optimized automatic registration 2.5D
  • Optimized automatic registration 3.5D
  • Time series optimized automatic registration
  • VOI landmark
• Segmentation
  • Evaluate VOI segmentation
  • Fuzzy C-means
    • Single-channel
    • Multispectral
  • Graph based
  • Levelset
  • Levelset diffusion
  • Threshold
  • Watershed
• Shading Correction
  • Entropy Minimization
  • Inhomogeneity N3 Correction
  • MRI combined info
• Transformation (i.e. affine)
  • Reslicing / iso-tropic voxels
  • Subsample
  • Transform
  • Transform nonlinear
  • Transform to power of 2