Difference between revisions of "Quantify Mask"
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− | <br /></font></div><div style="font-style: normal; margin-bottom: 6pt; margin-left: 0pt; margin-right: 0pt; margin-top: 14pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> To apply the Quantify Mask(s) algorithm:<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 18pt; margin-right: 0pt; margin-top: 6pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 1 Open an image of interest.<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 18pt; margin-right: 0pt; margin-top: 6pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 2 Create a mask as described in Chapter 8, | + | <br /></font></div><div style="font-style: normal; margin-bottom: 6pt; margin-left: 0pt; margin-right: 0pt; margin-top: 14pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> To apply the Quantify Mask(s) algorithm:<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 18pt; margin-right: 0pt; margin-top: 6pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 1 Open an image of interest.<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 18pt; margin-right: 0pt; margin-top: 6pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 2 Create a mask as described in Chapter 8, "Generating masks".<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 18pt; margin-right: 0pt; margin-top: 6pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 3 Save the mask as Boolean, byte, unsigned byte, or short. <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 18pt; margin-right: 0pt; margin-top: 6pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 4 Alternatively, you can open the mask file from the disk using the Quantify dialog box options.<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 5pt; margin-left: 0pt; margin-right: 0pt; margin-top: 5pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">Note:</font>'''</span> the algorithm doesn't work for paint masks.<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 18pt; margin-right: 0pt; margin-top: 6pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 5 Call Utilities>Quantify> Quantify Mask(s).<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 18pt; margin-right: 0pt; margin-top: 6pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 6 The algorithm begins to run and the data appear in the Output window. See Figure 50.<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 18pt; margin-right: 0pt; margin-top: 6pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 7 Later, you can save the data using the File>Save Images option provided by the Output window.<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> |
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Revision as of 18:53, 15 February 2012
Quantify Mask
There are two algorithms Quantify Mask(s) and Quantify Using Mask that calculate Center of Mass, area (in resolutions), and number of pixels for a selected mask(s). The algorithms work with Boolean, byte, unsigned byte, and short masks.
Identify Image Mask file
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Choose
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Press to select an image mask from your hard drive.
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OK
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Applies the Quantify masks(s) or Quantify Using Mask algorithms to the image(s).
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Cancel
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Disregards any changes you made in this dialog box and closes the dialog box.
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Help
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Displays online help for this dialog box.
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To apply the Quantify Mask(s) algorithm:
1 Open an image of interest.
2 Create a mask as described in Chapter 8, "Generating masks".
3 Save the mask as Boolean, byte, unsigned byte, or short.
4 Alternatively, you can open the mask file from the disk using the Quantify dialog box options.
Note: the algorithm doesn't work for paint masks.
5 Call Utilities>Quantify> Quantify Mask(s).
6 The algorithm begins to run and the data appear in the Output window. See Figure 50.
7 Later, you can save the data using the File>Save Images option provided by the Output window.
To apply the Quantify Using Mask algorithm:
1 Open an image of interest.
2 Create the image mask as described in Chapter 8, [MIPAV_Segmentation.html#998952 "Generating masks"].
3 Alternatively, you can open the mask file from the disk.
4 Call Utilities>Quantify> Quantify Using Mask.
5 The algorithm begins to run and the data appear in the Output window. See Figure 51.
6 Later, you can save the data using the File>Save Images option provided by the Output window.
Note: the algorithm works with Boolean, byte, unsigned byte, and short masks, but it doesn't work with paint masks.