Publications

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Papers

MIPAV

2012

  • Choo A L, Chang S E, Zengin-Bolatkale H, Ambrose N G, Loucks T M, Corpus callosum morphology in children who stutter, J Commun Disord. 2012 Apr 4. [Epub], PUBMED


We have a number of interesting papers in submission, please check back in October 2012. (For a hint on our work, take a look at the NIH research festival posters below).

2011

  • P. Maggi, E. Sweeney, M. Gaitan, J. Wohler, J. Liu, J. Senseney, C. Shea, L. Massacesi, S. Jacobson, A. Silva, D. Reich. "Early blood-brain barrier permeability changes in the normal-appearing white matter of a marmoset model of MS," in 27th Congress of the European Committee for Treatment and Research in Multiple Sclerosis, 2011, Abstract
  • Cavallari M, Falco T, Frontali M, Romano S, Bagnato F, Orzi F., Fractal analysis reveals reduced complexity of retinal vessels in CADASIL, PLoS One. 2011 Apr 27;6(4):e19150, PUBMED

2010

  • Kelsie Covington, Evan S. McCreedy, Min Chen, Aaron Carass, Member, IEEE, Nicole Aucoin, Member, IEEE, and Bennett A. Landman, Member, IEEE, Interfaces and Integration of Medical Image Analysis Frameworks: Challenges and Opportunities, Annu ORNL Biomed Sci Eng Cent Conf. 2010 May 25; 2010: 1–4, PMCID: PMC2998761, doi: 10.1109/BSEC.2010.5510850, HTML

2009

  • Giesel FL, Mehndiratta A, Locklin J, McAuliffe MJ, White S, Choyke PL, Knopp MV, Wood BJ, Haberkorn U, von Tengg-Kobligk H., Image fusion using CT, MRI and PET for treatment planning, navigation and follow up in percutaneous RFA, Exp Oncol. 2009 Jun;31(2):106-14, PUBMED
  • J. Senseney, P. F. Hemler, and M. J. McAuliffe, "Automated segmentation of computed tomography images," in Computer-Based Medical Systems, 2009. CBMS 2009. 22nd IEEE International Symposium on, 2009, pp. 1-7, PDF
  • D Yanga, J Zheng, A Nofal, JO Deasy, IM El Naqa, Techniques and software tool for 3D multimodality medical image segmentation, 2009, PDF

2008

TBD.

2007

  • Pierre-Louis Bazin, Jennifer L. Cuzzocreo, Michael A. Yassa, William Gandler, Matthew J. McAuliffe, Susan S. Bassett, Dzung L. Phama, Volumetric neuroimage analysis extensions for the MIPAV software package, Journal of Neuroscience Methods 165 (2007) 111–121, PDF, HTML
  • Bazin P L, Pham D L, Topology correction of segmented medical images using a fast marching algorithm,Comput Methods Programs Biomed. 2007 Nov;88(2):182-90. Epub 2007 Oct 17, PUBMED
  • Wood BJ, Locklin JK, Viswanathan A, Kruecker J, Haemmerich D, Cebral J, Sofer A, Cheng R, McCreedy E, Cleary K, McAuliffe MJ, Glossop N, Yanof J, Technologies for guidance of radiofrequency ablation in the multimodality interventional suite of the future, J Vasc Interv Radiol. 2007 Jan;18(1 Pt 1):9-24, PUBMED

2006

  • McCreedy ES, Cheng R, Hemler PF, Viswanathan A, Wood BJ, McAuliffe MJ, Radio frequency ablation registration, segmentation, and fusion tool, IEEE Trans Inf Technol Biomed. 2006 Jul;10(3):490-6, PUBMED
  • Griffith C, Bagnato F, Gupta S, Calabrese A, Oh U, Chiu A, Ohayon JM, McAuliffe MJ, Tasciyan TA, Jacobson S., Brain volume measurements in patients with human T-cell lymphotropic virus-1-associated tropical spastic paraparesis,J Neurovirol. 2006 Oct;12(5):349-55, PUBMED


Posters

NIH Research Festival

2012 - NIH Spring Research Festival, April 25-26

2011 - October 26 - 28, Program in PDF

2010 - October 5 - 8, NIH Poster Session Program

2012

  • A Streamlined Pipeline Utility for Analyzing Universal DTI Data in MIPAV, Authors: Elizabeth Tyrie, Alexandra Bokinsky PhD, Nishith Pandya, Julie McEntee, Dzung Pham PhD, Matthew McAuliffe PhD, NIH Spring Research Festival, April 25-26, 2012, File:TyrieMIPAVDTIPipelinePoster.pdf

2011

  • A MIPAV plugin for the visual and quantitative comparison of FreeSurfer subcortical segmentation results, Authors: F. Lalonde, R. Cheng, J. Senseney, M. McAuliffe, 2011, Abstract, File:FreeSurferMIpavPlugIn2011.pdf
  • Single-, bi- and multi-exponential fitting of quantitative T2 MR images, Authors: J. Senseney, A. Gilbert, I. Evangelou, M. McAuliffe, 2011, Abstract
  • Early blood-brain-barrier permeability changes in the normal-appearing white matter of a marmoset model of MS, Authors: P. Maggi, M.I. Gaitán, E.M. Sweeney, J. Senseney, C. Shea, L. Massacesi, S. Jacobson, A. Silva, D.S. Reich, Abstract
  • Java GPU-based multi-histogram volume rendering framework, Authors: R. Cheng, A. Bokinsky, J. Senseney, M. McAuliffe, Abstract, File:MultiHistogramVolumeRenderingMipav2011.pdf


2010

  • A Novel Combination of Algorithms to Register Drosophila Optic Lobe Neurons to an Atlas, Authors: N. Pandya, C. Ting, C. Lee, M. McAuliffe, 2010
  • DCE-MRI processing framework, Authors: J. Senseney, W. Gandler, I. Evangelou, D. Reich, M. McAuliffe, 2010
  • Patient-Specific MRI-based Molds for Correlating in vivo Prostate MRI and Histopathology with Mold-Guided Tissue Biopsies, Authors: Vijay Shah, Thomas Pohida, Baris Turkbey, Haresh Mani, Maria Merino, Peter Pinto, Ruida Cheng, Matthew McAuliffe, Peter Choyke, Marcelino Bernardo, NIH Research Festival, Bethesda, MD, 2010

2009

  • Enhanced medical image analysis workflow integration using JIST and MIPAV, 2009
  • Methods for Surface Reconstruction Using MIPAV, Authors: Ruida Cheng, Vijay Shah, Alexandra Bokinsky, Baris Turkbey, Paul Hemler, Marcelino Bernardo, Peter Choyke, Thomas Pohida, Matthew McAuliffe, NIH Research Festival, Bethesda, MD, 2009

2007

  • Java Based Volume Rendering, Authors: Ruida Cheng, Alexandra Bokinsky, Paul Hemler, Evan McCreedy, Matthew McAuliffe, NIH Research Festival, Bethesda, MD, 2007

2006

  • RFA Simulation and Treatment Planning with a Haptic Device, Authors: Ruida Cheng, Evan S. McCreedy, Alfred Luk, Brad J. Wood, Matthew J. McAuliffe, NIH Research Festival, Bethesda, MD, File:RfaSimulationHapticDevice2006.pdf

2005

  • Radio Frequency Ablation Segmentation Tool (RFAST), Authors: Ruida Cheng, Evan S. McCreedy, Paul F. Hemler, Anand Viswanathan, Brad J. Wood, Matthew J. McAuliffe, NIH Research Festival, Bethesda, MD, 2005, File:RfastPoster2005.pdf

Other posters

2012

  • Tumor Treatment Response Identification Using Combination Post-Treatment Mapping to Quantify Voxel-Wise Multiparameter MRI Biomarker Changes: A Simulation Study, Author: Senseney Justin, presented on 2IEEE International Symposium on Biomedical Imaging (ISBI), May 2-5, 2012, File:ISBISenseneyJustin.pdf

2009

  • DTI Processing and Visualization Prototype in MIPAV, Authors: Nishith Pandya, Alexandra Bokinsky, Ruida Cheng, Lindsay Walker, Carlo Pierpaoli, Matthew McAuliffe, International Society for Magnetic Resonance in Medicine (ISMRM), 2009

Presentations

See also: