Difference between revisions of "PlugInDialogCT MD.java"
From MIPAV
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| − | + | {| border="1" cellpadding="5" |+ <div style="font-style: normal; margin-bottom: 3pt; margin-left: 0pt; margin-right: 0pt; margin-top: 9pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> Figure 329. PlugInAlgorithmCT_MD.java <br /></font>'''</div> |- | <div style="font-style: normal; font-weight: normal; margin-bottom: 12pt; margin-left: 0pt; margin-right: 0pt; margin-top: 6pt; text-align: center; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> PlugInAlgorithmCT_MD.java<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 1 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">import</font>'''</span> gov.nih.mipav.model.algorithms.*;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 2 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">import</font>'''</span> gov.nih.mipav.model.structures.*;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 3 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">import</font>'''</span> gov.nih.mipav.view.*;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 4 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 5 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">import</font>'''</span> java.io.*;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 6 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">import</font>'''</span> java.util.*;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 7 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 8 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#00ef07"> 9 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07">/**</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#00ef07"> 10 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>*</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#00ef07"> 11 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>* This shows how to extend the AlgorithmBase class.</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#00ef07"> 12 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>*</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#00ef07"> 13 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>* Supports the segmentation</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#00ef07"> 14 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>* CT scans:</nowiki></font></span><br /></font></div> |- | <div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#00ef07"> 15 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>* Fat: -190 to -30</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#00ef07"> 16 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>* Low density muscle: 0 to 30</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#00ef07"> 17 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>* High density muscle: 31 to 100</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#00ef07"> 18 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>* If you have any questions, please drop me a line.</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#00ef07"> 19 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>* =====</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#00ef07"> 20 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>* Matthew J. Delmonico, MS, MPH</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#00ef07"> 21 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>* Graduate Research Assistant, Exercise Physiology</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#00ef07"> 22 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>* 2132 HHP Building</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#00ef07"> 23 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>* University of Maryland</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#00ef07"> 24 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>* College Park, MD 20742</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#00ef07"> 25 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>* (301) 405-2569</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#00ef07"> 26 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>* (301) 793-0567 (cell)</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#00ef07"> 27 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>*</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#00ef07"> 28 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>* @version July 12, 2002</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#00ef07"> 29 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>* @author</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#00ef07"> 30 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>* @see AlgorithmBase</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#00ef07"> 31 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>*</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#00ef07"> 32 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>* $Logfile: /mipav/src/plugins/PlugInAlgorithmCT_MD.java $</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#00ef07"> 33 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>* $Revision: 10 $</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 34 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>* $Date: 10/13/04 1:09p</nowiki></font></span> $<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#00ef07"> 35 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>*</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#00ef07"> 36 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>*/</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 37 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">public class </font>'''</span>PlugInAlgorithmCT_MD <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">extends</font>'''</span> AlgorithmBase {<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 38 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 39 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 40 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">private boolean</font>'''</span> entireImage = <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">true</font>'''</span><nowiki>;</nowiki><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 41 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 42 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">public int</font>'''</span> fatL = -190;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 43 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">public int</font>'''</span> fatH = -30;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 44 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 45 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">public int</font>'''</span> ldmL = 0;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 46 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">public int</font>'''</span> ldmH = 30;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 47 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 48 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000"> public int</font>'''</span> hdmL = 31;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 49 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">public int</font>'''</span> hdmH = 100;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 50 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 51 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 52 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07">/**</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 53 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"> * Constructor for 3D images in which changes are placed in a predetermined</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 54 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"> * destination</font></span> <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07">image.</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 55 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>* @param destImg Image model where result image is to stored.</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 56 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>* @param srcImg Source image model.</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 57 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>*/</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 58 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">public</font>'''</span> PlugInAlgorithmCT_MD(ModelImage destImg, ModelImage srcImg) {<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 59 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">super</font>'''</span>(destImg, srcImg);<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 60 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 61 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#00ef07"> 62 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07">/**</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 63 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>* Prepares this class for destruction.</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#00ef07"> 64 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>*/</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 65 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">public void</font>'''</span> finalize(){<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 66 destImage = <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">null</font>'''</span><nowiki>;</nowiki><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 67 srcImage = <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">null</font>'''</span><nowiki>;</nowiki><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 68 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">super</font>'''</span>.finalize();<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 69 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 70 <br /></font></div> |} <br /></font>'''</div><div style="font-style: normal; margin-bottom: 2pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> {| border="1" cellpadding="5" |+ <div style="font-style: normal; margin-bottom: 3pt; margin-left: 0pt; margin-right: 0pt; margin-top: 9pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> Figure 330. PlugInAlgorithmCT_MD.java<br /></font>'''</div> |- | <div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 71 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07">/**</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 72 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>* Starts the algorithm.</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 73 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>*/</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 74 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">public void</font>'''</span> run() {<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 75 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 76 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">if</font>'''</span> (srcImage == <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">null</font>'''</span>) {<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 77 displayError("Source Image is null");<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 78 notifyListeners(<span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">this</font>'''</span>);<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 79 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">return</font>'''</span><nowiki>;</nowiki><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 80 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 81 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">if</font>'''</span> (destImage == <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">null</font>'''</span>) {<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 82 displayError("Source Image is null");<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 83 notifyListeners(<span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">this</font>'''</span>);<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 84 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">return</font>'''</span><nowiki>;</nowiki><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 85 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 86 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 87 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 88 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07">// start the timer to compute the elapsed time</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 89 setStartTime();<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 90 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 91 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">if</font>'''</span> (destImage != <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">null</font>'''</span>){ <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"> // if there exists a destination image</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 92 if (srcImage.getNDims() == 2){<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 93 calcStoreInDest2D();<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 94 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 95 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">else if</font>'''</span> (srcImage.getNDims() > 2) {<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 96 calcStoreInDest3D();<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 97 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 98 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 99 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 100 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07">// compute the elapsed time</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 101 computeElapsedTime();<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 102 notifyListeners(<span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">this</font>'''</span>);<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 103 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 104 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 105 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07">/**</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 106 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>* This function produces a new image that has been median filtered and places</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 107 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"> * filtered</font></span> <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07">image in the destination image.</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 108 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>*/</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 109 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">private void</font>'''</span> calcStoreInDest2D(){<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 110 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 111 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 112 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">int</font>'''</span> length; <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07">// total number of data-elements (pixels) in image</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 113 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">float</font>'''</span> buffer[]; <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07">// data-buffer (for pixel data) which is the "heart"</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 114 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"> // of the</font></span> <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07">image</font></span><br /></font></div> |- | <div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 115 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">try</font>'''</span> {<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 116 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07">// image length is length in 2 dims</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 117 length = srcImage.getExtents()[0] * srcImage.getExtents()[1];<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 118 buffer = <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">new float</font>'''</span>[length];<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 119 srcImage.exportData(0,length, buffer); <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07">// locks and releases lock</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 120 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 121 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">catch</font>'''</span> (IOException error) {<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 122 buffer = <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">null</font>'''</span><nowiki>;</nowiki><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 123 errorCleanUp("Algorithm CT_MD reports: source image locked", <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">true</font>'''</span>);<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 124 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">return</font>'''</span><nowiki>;</nowiki><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 125 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 126 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">catch</font>'''</span> (OutOfMemoryError e){<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 127 buffer = <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">null</font>'''</span><nowiki>;</nowiki><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 128 errorCleanUp("Algorithm CT_MD reports: out of memory", <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">true</font>'''</span>);<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 129 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">return</font>'''</span><nowiki>;</nowiki><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 130 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 131 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 132 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">int</font>'''</span> mod = length/100; <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07">// mod is 1 percent of length</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 133 initProgressBar();<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 134 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 135 // Fat: -190 to -30<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 136 // Low density muscle: 0 to 30<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 137 // High density muscle: 31 to 100<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 138 BitSet mask = <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">null</font>'''</span><nowiki>;</nowiki><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 139 if (srcImage.getVOIs().size() > 0 ) {<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 140 mask = srcImage.generateVOIMask();<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 141 entireImage = <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">false</font>'''</span><nowiki>;</nowiki><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 142 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 143 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 144 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">int</font>'''</span> fat = 0;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 145 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">int</font>'''</span> ldMuscle = 0;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 146 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000"> int</font>'''</span> hdMuscle = 0;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 147 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">for </font>'''</span>(int i = 0; i < length && !threadStopped; i ){<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 148 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">if</font>'''</span> (isProgressBarVisible() && (i)%mod==0)<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 149 progressBar.setValue(Math.round((<span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">float</font>'''</span>)(i)/(length-1) * 100));<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 150 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 151 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">if</font>'''</span> (entireImage == <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">true </font>'''</span><nowiki>|| mask.get(i) ) {</nowiki><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 152 if( buffer[i] >= fatL && buffer[i] <= fatH ) {<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 153 destImage.set(i, 20);<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 154 fat ;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 155 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 156 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">else if</font>'''</span>( buffer[i] >= ldmL && buffer[i] <= ldmH ) {<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 157 destImage.set(i, 40);<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 158 ldMuscle ;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 159 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 160 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">else if</font>'''</span>( buffer[i] >= hdmL && buffer[i] <= hdmH ) {<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 161 destImage.set(i, 60);<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 162 hdMuscle ;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 163 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 164 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">else</font>'''</span> {<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 165 destImage.set(i, 0);<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 166 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"> //buffer[i] = (float)srcImage.getMin();</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 167 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 168 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 169 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 170 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 171 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 172 <br /></font></div> |- | <div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 173 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"> //destImage.releaseLock();</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 174 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 175 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">if</font>'''</span> (threadStopped) {<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 176 finalize();<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 177 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">return</font>'''</span><nowiki>;</nowiki><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 178 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 179 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 180 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">float </font>'''</span>area = srcImage.getFileInfo()[0].getResolutions()[0] *<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 181 srcImage.getFileInfo()[0].getResolutions()[1];<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 182 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 183 destImage.getUserInterface().getMessageFrame().append("Number of Fat pixels = " <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 184 fat , ViewJFrameMessage.DATA );<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 185 destImage.getUserInterface().getMessageFrame().append(" Area = " (fat*area) <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 186 " mm^2\n", ViewJFrameMessage.DATA );<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 187 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 188 destImage.getUserInterface().getMessageFrame().append("Number of LDM pixels = " <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 189 ldMuscle , ViewJFrameMessage.DATA );<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 190 destImage.getUserInterface().getMessageFrame().append(" Area = " (ldMuscle*area) <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 191 " mm^2\n", ViewJFrameMessage.DATA );<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 192 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 193 destImage.getUserInterface().getMessageFrame().append("Number of HDM pixels = " <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 194 hdMuscle , ViewJFrameMessage.DATA );<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 195 destImage.getUserInterface().getMessageFrame().append(" Area = " (hdMuscle*area) <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 196 " mm^2\n", ViewJFrameMessage.DATA );<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 197 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 198 destImage.calcMinMax();<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 199 setCompleted(<span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">true</font>'''</span>);<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 200 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 201 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 202 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"> /**</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 203 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>* This function produces a new volume image that has been median filtered.</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 204 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>* Image can be filtered by filtering each slice individually, or by filtering</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 205 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"> * using a</font></span> <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07">kernel-volume.</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 206 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>*/</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 207 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">private void</font>'''</span> calcStoreInDest3D(){<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 208 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 209 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">int</font>'''</span> totLength, imgLength;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 210 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">float</font>'''</span> buffer[];<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 211 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 212 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">float</font>'''</span> vol = srcImage.getFileInfo()[0].getResolutions()[0] *<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 213 srcImage.getFileInfo()[0].getResolutions()[1] *<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 214 srcImage.getFileInfo()[0].getResolutions()[2];<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 215 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 216 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">try</font>'''</span> {<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 217 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07">// image totLength is totLength in 3 dims</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 218 imgLength = srcImage.getSliceSize();<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 219 totLength = srcImage.getSliceSize() * srcImage.getExtents()[2];<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 220 buffer = <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">new float</font>'''</span>[totLength];<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 221 srcImage.exportData(0,totLength, buffer); <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07">// locks and releases lock</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 222 buildProgressBar(srcImage.getImageName(), "Processing image ...", 0, 100);<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 223 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 224 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 225 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">catch</font>'''</span> (IOException error) {<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 226 buffer = <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">null</font>'''</span><nowiki>;</nowiki><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 227 errorCleanUp("Algorithm CT_MD: source image locked", <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">true</font>'''</span>);<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 228 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">return</font>'''</span><nowiki>;</nowiki><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 229 }<br /></font></div> |- | <div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 230 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">catch</font>'''</span> (OutOfMemoryError e){<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 231 buffer = <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">null</font>'''</span><nowiki>;</nowiki><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 232 errorCleanUp("Algorithm CT_MD: Out of memory creating process buffer", <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">true</font>'''</span>);<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 233 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">return</font>'''</span><nowiki>;</nowiki><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 234 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 235 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 236 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">int</font>'''</span> totFat = 0;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 237 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">int</font>'''</span> totLdMuscle = 0;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 238 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">int</font>'''</span> totHdMuscle = 0;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 239 initProgressBar();<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 240 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 241 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">for</font>'''</span> (<span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">int</font>'''</span> i = 0; i < srcImage.getExtents()[2] && !threadStopped; i ){<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 242 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">int</font>'''</span> fat = 0;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 243 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">int</font>'''</span> ldMuscle = 0;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 244 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">int</font>'''</span> hdMuscle = 0;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 245 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 246 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">if</font>'''</span> ( isProgressBarVisible() )<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 247 progressBar.setValue(Math.round((<span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">float</font>'''</span>)(i)/(srcImage.getExtents()[2]-1) *<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 248 100));<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 249 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 250 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000"> for</font>'''</span> (int j = 0; j < imgLength && !threadStopped; j ){<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 251 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07">//System.out.println(" j = " j);</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 252 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">int</font>'''</span> index = i*imgLength j;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 253 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">if</font>'''</span>( buffer[index] >= fatL && buffer[index] <= fatH ) {<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 254 destImage.set(index, 60);<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 255 totFat ;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 256 fat ;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 257 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 258 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">else if</font>'''</span>( buffer[index] >= ldmL && buffer[index] <= ldmH ) {<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 259 destImage.set(index, 120);<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 260 totLdMuscle ;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 261 ldMuscle ;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 262 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 263 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000"> else if</font>'''</span>( buffer[index] >= hdmL && buffer[index] <= hdmH ) {<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 264 destImage.set(index, 200);<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 265 totHdMuscle ;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 266 hdMuscle ;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 267 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 268 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">else</font>'''</span> {<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 269 destImage.set(index, 0);<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 270 <span style="font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline">''<font color="#000000"> </font>''</span><span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07">//buffer[i] = -1024;</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 271 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 272 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 273 destImage.getUserInterface().getMessageFrame().append("\n\n ***************** Slice<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 274 " i " totals ***************\n",<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 275 ViewJFrameMessage.DATA);<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 276 destImage.getUserInterface().getMessageFrame().append("Number of fat pixels = " <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 277 fat , ViewJFrameMessage.DATA );<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 278 destImage.getUserInterface().getMessageFrame().append(" Volume = " (fat*vol) <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 279 " mm^3\n", ViewJFrameMessage.DATA );<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 280 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 281 destImage.getUserInterface().getMessageFrame().append("Number of LDM pixels = " <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 282 ldMuscle , ViewJFrameMessage.DATA );<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 283 destImage.getUserInterface().getMessageFrame().append(" Volume = " <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 284 (ldMuscle*vol) " mm^3\n", ViewJFrameMessage.DATA );<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 285 <br /></font></div> |- | <div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 286 destImage.getUserInterface().getMessageFrame().append("Number of HDM pixels<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 287 = " hdMuscle , ViewJFrameMessage.DATA );<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 288 destImage.getUserInterface().getMessageFrame().append(" Volume = " <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 289 (hdMuscle*vol) " mm^3\n", ViewJFrameMessage.DATA );<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 290 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 291 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 292 destImage.releaseLock();<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 293 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 294 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">if</font>'''</span> (threadStopped) {<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 295 finalize();<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 296 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">return</font>'''</span><nowiki>;</nowiki><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 297 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 298 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 299 destImage.getUserInterface().getMessageFrame().append("\n ************************<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 300 Totals ********************\n",<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 301 ViewJFrameMessage.DATA);<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 302 destImage.getUserInterface().getMessageFrame().append("Number of totFat pixels = " <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 303 totFat , ViewJFrameMessage.DATA );<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 304 destImage.getUserInterface().getMessageFrame().append(" Volume = " (totFat*vol) <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 305 " mm^3\n", ViewJFrameMessage.DATA );<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 306 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 307 destImage.getUserInterface().getMessageFrame().append("Number of LDM pixels = " <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 308 totLdMuscle , ViewJFrameMessage.DATA );<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 309 destImage.getUserInterface().getMessageFrame().append(" Volume = " (totLdMuscle*vol)<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 310 " mm^3\n", ViewJFrameMessage.DATA );<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 311 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 312 destImage.getUserInterface().getMessageFrame().append("Number of HDM pixels = " <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 313 totHdMuscle , ViewJFrameMessage.DATA );<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 314 destImage.getUserInterface().getMessageFrame().append(" Volume = " (totHdMuscle*vol)<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 315 " mm^3\n", ViewJFrameMessage.DATA );<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 316 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 317 destImage.calcMinMax();<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 318 progressBar.dispose();<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 319 setCompleted(<span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">true</font>'''</span>);<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 320 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 321 }<br /></font></div> |} <br /></font>'''</div> | |
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