Difference between revisions of "Plug-in CT MD, a typical plug-in program"

Latest revision as of 12:11, 24 June 2013

PlugInCT_MD is a typical example of a plug-in program. It consists of three files:

PlugInCT_MD.java-Provides an interface to MIPAV and the plug-in program.

PlugInDialogCT_MD.java-Invokes the dialog to get user-supplied parameters.

PlugInAlgorithmCT_MD.java-Implements the algorithm.

**Figure 23. PlugInCT_MD.java**
PlugInCT_MD.java 1 import plugins.PlugInDialogCT_MT; //associated class file 2 import gov.nih.mipav.plugins.; //needed to load PlugInAlgorithm / PlugInView / 3 //PlugInFile interface 4 import* gov.nih.mipav.view.; 5 import* gov.nih.mipav.model.structures.; 6 7 import* java.awt.; 8 9 /* 10 * This is a simple plugin for the University of Maryland to simple segment an 11 * imagebased on CT Hounsfield units. 12 * 13 * @see PlugInAlgorithm 14 / 15 16 //This is an Algorithm type of PlugIn, and therefore must implement PlugInAlgorithm 17 //Implementing the PlugInAlgorithm requires this class to implement the run method 18 //with the correct parameters 19 public class* PlugInCT_MD implements PlugInAlgorithm { 20 21 /** 22 * Defines body of run method, which was declared in the interface. 23 * @param UI User Interface 24 * @param parentFrame ParentFrame 25 * @param image Current ModelImage--this is an image already loaded into 26 * MIPAV. Can be null. 27 / 28 public void* run (ViewUserInterface UI, Frame parentFrame, ModelImage image){ 29 30 if (parentFrame instanceof ViewJFrameImage) 31 new PlugInDialogCT_MD (parentFrame,image); 32 33 else 34 MipavUtil.displayError ("PlugIn CT_MD only runs on an image frame."); 35 } 36 } 37 }

{| border="1" cellpadding="5" |+
Figure 328. PlugInDialogCT_MD.javaÂ
|- |
PlugInDialogCT_MD.java
1 import gov.nih.mipav.view.*;
2 import gov.nih.mipav.view.dialogs.*;
3 import gov.nih.mipav.model.structures.*;
4 import gov.nih.mipav.model.algorithms.*;
5
6 import java.awt.event.*;
7 import java.awt.*;
8 import java.util.*;
9
10 import javax.swing.*;
11
12
13 /**
14 *
15 * JDialogBase class.
16 *
17 * Note:
18 *
19 * @version July 12, 2002
20 * @author
21 * @see JDialogBase
22 * @see JDialogMedian
23 * @see AlgorithmInterface
24 *
25 * $Logfile: /mipav/src/plugins/PlugInDialogCT_MD.java $
26 * $Revision: 6 $
27 * $Date: 8/05/04 5:44p $
28 *
29 */
30 public class PlugInDialogCT_MD extends JDialogBase implements AlgorithmInterface {
31
32 private PlugInAlgorithmCT_MD ctSegAlgo = null;
33 private ModelImage image; // source image
34 private ModelImage resultImage = null; // result image
35 private ViewUserInterface userInterface;
36
37 private String titles[];
38
39 private float correctionVal;
40 private JTextField fatLValTF;
41 private JTextField fatHValTF;
42 private JTextField ldmLValTF;
43 private JTextField ldmHValTF;
44 private JTextField hdmLValTF;
45 private JTextField hdmHValTF;
46
47 private int fatLVal;
48 private int fatHVal;
49 private int ldmLVal;
50 private int ldmHVal;
51 private int hdmLVal;
52 private int hdmHVal;
53
|- |
54 /**
55 * Creates new dialog for Median filtering using a plugin.
56 * @param parent Parent frame.
57 * @param im Source image.
58 */
59
60 public PlugInDialogCT_MD(Frame theParentFrame, ModelImage im) {
61 super(theParentFrame, true);
62 if (im.getType() == ModelImage.BOOLEAN || im.isColorImage()) {
63 MipavUtil.displayError("Source Image must NOT be Boolean or Color");
64 dispose();
65 return;
66 }
67 image = im;
68 userInterface = ((ViewJFrameBase)(parentFrame)).getUserInterface();
69 init();
70 }
71
72 /**
73 * Used primarily for the script to store variables and run the algorithm. No
74 * actual dialog will appear but the set up info and result image will be stored
75 * here.
76 * @param UI The user interface, needed to create the image frame.
77 * @param im Source image.
78 */
79 public PlugInDialogCT_MD(ViewUserInterface UI, ModelImage im) {
80 super();
81 userInterface = UI;
82 if (im.getType() == ModelImage.BOOLEAN || im.isColorImage()) {
83 MipavUtil.displayError("Source Image must NOT be Boolean or Color");
84 dispose();
85 return;
86 }
87
88 image = im;
89 }
90
91 /**
92 * Sets up the GUI (panels, buttons, etc) and displays it on the screen.
93 */
94 private void init(){
95
96 setForeground(Color.black);
97 setTitle("CT_segmentation");
98
99 JPanel inputPanel = new JPanel(new GridLayout(3, 3));
100 inputPanel.setForeground(Color.black);
101 inputPanel.setBorder(buildTitledBorder("Input parameters"));
102
103 JLabel labelFat = new JLabel("Fat thresholds: ");
104 labelFat.setForeground(Color.black);
105 labelFat.setFont(serif12);
106 inputPanel.add(labelFat);
107
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108 fatLValTF = new JTextField();
109 fatLValTF.setText("-190");
110 fatLValTF.setFont(serif12);
111 inputPanel.add(fatLValTF);
112
113 fatHValTF = new JTextField();
114 fatHValTF.setText("-30");
115 fatHValTF.setFont(serif12);
116 inputPanel.add(fatHValTF);
117
118 JLabel labelLDM = new JLabel("Low density muscle thresholds: ");
119 labelLDM.setForeground(Color.black);
120 labelLDM.setFont(serif12);
121 inputPanel.add(labelLDM);
122
123 ldmLValTF = new JTextField();
124 ldmLValTF.setText("0");
125 ldmLValTF.setFont(serif12);
126 inputPanel.add(ldmLValTF);
127
128 ldmHValTF = new JTextField();
129 ldmHValTF.setText("30");
130 ldmHValTF.setFont(serif12);
131 inputPanel.add(ldmHValTF);
132
133 JLabel labelHDM = new JLabel("High density muscle thresholds: ");
134 labelHDM.setForeground(Color.black);
135 labelHDM.setFont(serif12);
136 inputPanel.add(labelHDM);
137
138 hdmLValTF = new JTextField();
139 hdmLValTF.setText("31");
140 hdmLValTF.setFont(serif12);
141 inputPanel.add(hdmLValTF);
142
143 hdmHValTF = new JTextField();
144 hdmHValTF.setText("100");
145 hdmHValTF.setFont(serif12);
146 inputPanel.add(hdmHValTF);
147
148 getContentPane().add(inputPanel, BorderLayout.CENTER);
149
150 // Build the Panel that holds the OK and CANCEL Buttons
151 JPanel OKCancelPanel = new JPanel();
152
153 // size and place the OK button
154 buildOKButton();
155 OKCancelPanel.add(OKButton, BorderLayout.WEST);
156 // size and place the CANCEL button
157 buildCancelButton();
158 OKCancelPanel.add(cancelButton, BorderLayout.EAST);
159 getContentPane().add(OKCancelPanel, BorderLayout.SOUTH);
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160 pack();
161 setVisible(true);
162 setResizable(false);
163 System.gc();
164
165 } // end init()
166
167 /**
168 * Accessor that returns the image.
169 * @return The result image.
170 */
171 public ModelImage getResultImage() {return resultImage;}
172
173
174
175 /**
176 * Accessor that sets the correction value
177 * @param num Value to set iterations to (should be between 1 and 20).
178 */
179 public void setCorrectionValue(float num) {correctionVal = num;}
180
181 //************************************************************************
182 //************************** Event Processing ****************************
183 //************************************************************************
184
185 /**
186 * Closes dialog box when the OK button is pressed and calls the algorithm.
187 * @param event Event that triggers function.
188 */
189 public void actionPerformed(ActionEvent event) {
190 String command = event.getActionCommand();
191
192 if (command.equals("OK")) {
193 if (setVariables()) {
194 callAlgorithm();
195 }
196 }
197 else if (command.equals("Script")) {
198 callAlgorithm();
199 }
200 else if (command.equals("Cancel")) {
201 dispose();
202 }
203 }
204
205 //************************************************************************
206 //************************** Algorithm Events ****************************
207 //************************************************************************
208
209 /**
210 * This method is required if the AlgorithmPerformed interface is implemented.
211 * It is called by the algorithm when it has completed or failed to to complete,
212 * so that the dialog can be display the result image and/or clean up.
213 * @param algorithm Algorithm that caused the event.
214 */
215 public void algorithmPerformed(AlgorithmBase algorithm) {
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|- |
216 ViewJFrameImage imageFrame = null;
217 if ( algorithm instanceof PlugInAlgorithmCT_MD) {
218 image.clearMask();
219 if(ctSegAlgo.isCompleted() == true && resultImage != null) {
220 //The algorithm has completed and produced a new image to be displayed.
221
222 updateFileInfo(image, resultImage);
223 resultImage.clearMask();
224 try {
225 //resultImage.setImageName("Median: " image.getImageName());
226
227 int dimExtentsLUT[] = new int[2];
228 dimExtentsLUT[0] = 4;
229 dimExtentsLUT[1] = 256;
230 ModelLUT LUTa = new ModelLUT(ModelLUT.COOLHOT, 256, dimExtentsLUT);
231 imageFrame = new ViewJFrameImage(resultImage, LUTa, new Dimension(610,200),
232 userInterface);
233 }
234 catch (OutOfMemoryError error){
235 System.gc();
236 MipavUtil.displayError("Out of memory: unable to open new frame");
237 }
238 }
239 else if (resultImage == null) {
240 // These next lines set the titles in all frames where the source image
241 // is displayed to image name so as to indicate that the image is now
242 // unlocked! The image frames are enabled and then registered to the
243 // userinterface.
244 Vector imageFrames = image.getImageFrameVector();
245 for (int i = 0; i < imageFrames.size(); i ) {
246 ((Frame)(imageFrames.elementAt(i))).setTitle(titles[i]);
247 ((Frame)(imageFrames.elementAt(i))).setEnabled(true);
248 if ( ((Frame)(imageFrames.elementAt(i))) != parentFrame) {
249 userInterface.registerFrame((Frame)(imageFrames.elementAt(i)));
250 }
251 }
252 if (parentFrame != null) userInterface.registerFrame(parentFrame);
253 image.notifyImageDisplayListeners(null, true);
254 }
255 else if (resultImage != null){
256 //algorithm failed but result image still has garbage
257 resultImage.disposeLocal(); // clean up memory
258 resultImage = null;
259 System.gc();
260 }
261 }
262 if (ctSegAlgo.isCompleted() == true) {
263 if (userInterface.isScriptRecording()) {
264 userInterface.getScriptDialog().append("Flow "
265 userInterface.getScriptDialog().getVar(image.getImageName()) " "
266 correctionVal "\n");
267 }
268 }
269 dispose();
270
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271 } // end AlgorithmPerformed()
272
273
274 /**
275 * Use the GUI results to set up the variables needed to run the algorithm.
276 * @return <code>true</code> if parameters set successfully, <code>false
277 * </code> otherwise.
278 */
279 private boolean setVariables() {
280 String tmpStr;
281
282
283 // verify iteration is within bounds
284 tmpStr = fatLValTF.getText();
285 if ( testParameter(tmpStr, -4000, 4000) ){
286 fatLVal = Integer.valueOf(tmpStr).intValue();
287 }
288 else{
289 fatLValTF.requestFocus();
290 fatLValTF.selectAll();
291 return false;
292 }
293
294 tmpStr = fatHValTF.getText();
295 if ( testParameter(tmpStr, -4000, 4000) ){
296 fatHVal = Integer.valueOf(tmpStr).intValue();
297 }
298 else{
299 fatHValTF.requestFocus();
300 fatHValTF.selectAll();
301 return false;
302 }
303
304 tmpStr = ldmLValTF.getText();
305 if ( testParameter(tmpStr, -4000, 4000) ){
306 ldmLVal = Integer.valueOf(tmpStr).intValue();
307 }
308 else{
309 ldmLValTF.requestFocus();
310 ldmLValTF.selectAll();
311 return false;
312 }
313
314 tmpStr = ldmHValTF.getText();
315 if ( testParameter(tmpStr, -4000, 4000) ){
316 ldmHVal = Integer.valueOf(tmpStr).intValue();
317 }
318 else{
319 ldmHValTF.requestFocus();
320 ldmHValTF.selectAll();
321 return false;
322 }
323
324
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325 tmpStr = hdmLValTF.getText();
326 if ( testParameter(tmpStr, -4000, 4000) ){
327 hdmLVal = Integer.valueOf(tmpStr).intValue();
328 }
329 else{
330 hdmLValTF.requestFocus();
331 hdmLValTF.selectAll();
332 return false;
333 }
334
335 tmpStr = hdmHValTF.getText();
336 if ( testParameter(tmpStr, -4000, 4000) ){
337 hdmHVal = Integer.valueOf(tmpStr).intValue();
338 }
339 else{
340 hdmHValTF.requestFocus();
341 hdmHValTF.selectAll();
342 return false;
343 }
344
345 return true;
346 } // end setVariables()
347
348 /**
349 * Once all the necessary variables are set, call the Gaussian Blur
350 * algorithm based on what type of image this is and whether or not there
351 * is a separate destination image.
352 */
353 private void callAlgorithm() {
354 String name = makeImageName(image.getImageName(), "_CTseg");
355
356 // stuff to do when working on 2-D images.
357 if (image.getNDims() == 2 ) { // source image is 2D
358 int destExtents[] = new int[2];
359 destExtents[0] = image.getExtents()[0]; // X dim
360 destExtents[1] = image.getExtents()[1]; // Y dim
361
362 try{
363 // Make result image of Ubyte type
364 resultImage = new ModelImage(ModelStorageBase.UBYTE, destExtents, name,
365 userInterface);
366
367 // Make algorithm
368 boolean entireFlag = true;
369
370 //ctSegAlgo = new PlugInAlgorithmFlowWrapFix(resultImage, image, iters,
371 // kernelSize, kernelShape, stdDev, regionFlag);
372 ctSegAlgo = new PlugInAlgorithmCT_MD(resultImage, image);
373
374 System.out.println("Dialog fatL = " fatLVal " fatH = " fatHVal);
375 ctSegAlgo.fatL = fatLVal;
376 ctSegAlgo.fatH = fatHVal;
377 ctSegAlgo.ldmL = ldmLVal;
378 ctSegAlgo.ldmH = ldmHVal;
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379 ctSegAlgo.hdmL = hdmLVal;
380 ctSegAlgo.hdmH = hdmHVal;
381
382
383
384 // This is very important. Adding this object as a listener allows the
385 // algorithm to notify this object when it has completed or failed. See
386 // algorithm performed event.
387 // This is made possible by implementing AlgorithmedPerformed interface
388 ctSegAlgo.addListener(this);
389 setVisible(false); // Hide dialog
390
391 if (runInSeparateThread) {
392 // Start the thread as a low priority because we wish to still have
393 // user interface work fast.
394 if (ctSegAlgo.startMethod(Thread.MIN_PRIORITY) == false){
395 MipavUtil.displayError("A thread is already running on this object");
396 }
397 }
398 else {
399 ctSegAlgo.run();
400 }
401 }
402 catch (OutOfMemoryError x){
403 MipavUtil.displayError("Dialog median: unable to allocate enough memory");
404 if (resultImage != null){
405 resultImage.disposeLocal(); // Clean up memory of result image
406 resultImage = null;
407 }
408 return;
409 }
410 }
411 else if (image.getNDims() == 3 ) {
412 int destExtents[] = new int[3];
413 destExtents[0] = image.getExtents()[0];
414 destExtents[1] = image.getExtents()[1];
415 destExtents[2] = image.getExtents()[2];
416
417 try{
418 // Make result image of float type
419 resultImage = new ModelImage(ModelStorageBase.UBYTE, destExtents, name,
420 userInterface);
421 boolean entireFlag = true;
422
423 ctSegAlgo = new PlugInAlgorithmCT_MD(resultImage, image);
424 ctSegAlgo.fatL = fatLVal;
425 ctSegAlgo.fatH = fatHVal;
426 ctSegAlgo.ldmL = ldmLVal;
427 ctSegAlgo.ldmH = ldmHVal;
428 ctSegAlgo.hdmL = hdmLVal;
429 ctSegAlgo.hdmH = hdmHVal;
430
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431 // This is very important. Adding this object as a listener allows the
432 // algorithm to notify this object when it has completed or failed.
433 // See algorithm performed event. This is made possible by implementing
434 // AlgorithmedPerformed interface
435 ctSegAlgo.addListener(this);
436 setVisible(false); // Hide dialog
437
438 if (runInSeparateThread) {
439 // Start the thread as a low priority because we wish to still have
440 // user interface work fast.
441 if (ctSegAlgo.startMethod(Thread.MIN_PRIORITY) == false){
442 MipavUtil.displayError("A thread is already running on this object");
443 }
444 }
445 else {
446 ctSegAlgo.run();
447 }
448 }
449 catch (OutOfMemoryError x){
450 MipavUtil.displayError("Dialog median: unable to allocate enough memory");
451 if (resultImage != null){
452 resultImage.disposeLocal(); // Clean up image memory
453 resultImage = null;
454 }
455 return;
456 }
457 }
458 } // end callAlgorithm()
459
460 }
|}

Next: PlugInAlgorithmCT_MD.java

@@ Line 1: / Line 1: @@
-==== PlugInCT_MD, a typical plugin program ====
 PlugInCT_MD is a typical example of a plug-in program. It consists of three files:
@@ Line 34: / Line 31: @@
 <br /></font></div><div style="font-style: normal; margin-bottom: 2pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000">  {| border="1" cellpadding="5" |+ <div style="font-style: normal; margin-bottom: 3pt; margin-left: 0pt; margin-right: 0pt; margin-top: 9pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> Figure 328. PlugInDialogCT_MD.javaÂ <br /></font>'''</div> |- | <div style="font-style: normal; font-weight: normal; margin-bottom: 12pt; margin-left: 0pt; margin-right: 0pt; margin-top: 6pt; text-align: center; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> PlugInDialogCT_MD.java<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 1 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">import </font>'''</span>gov.nih.mipav.view.*;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 2 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">import</font>'''</span> gov.nih.mipav.view.dialogs.*;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 3 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">import</font>'''</span> gov.nih.mipav.model.structures.*;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 4 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">import</font>'''</span> gov.nih.mipav.model.algorithms.*;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 5 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 6 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">import</font>'''</span> java.awt.event.*;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 7 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">import </font>'''</span>java.awt.*;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 8 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">import</font>'''</span> java.util.*;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 9 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 10 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">import</font>'''</span> javax.swing.*;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 11 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 12 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#00ef07"> 13 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07">/**</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#00ef07"> 14 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>*</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 15 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>* JDialogBase class</nowiki></font></span>.<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#00ef07"> 16 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>*</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 17 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>*</nowiki></font></span> <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07">Note:</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#00ef07"> 18 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>*</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 19 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>*</nowiki></font></span> <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07">@version July 12, 2002</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#00ef07"> 20 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>* @author</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#00ef07"> 21 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>* @see JDialogBase</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#00ef07"> 22 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>* @see JDialogMedian</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#00ef07"> 23 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>* @see AlgorithmInterface</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#00ef07"> 24 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>*</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#00ef07"> 25 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>* $Logfile: /mipav/src/plugins/PlugInDialogCT_MD.java $</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#00ef07"> 26 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>* $Revision: 6 $</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#00ef07"> 27 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>* $Date: 8/05/04 5:44p $</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#00ef07"> 28 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>*</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#00ef07"> 29 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>*/</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 30 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">public class</font>'''</span> PlugInDialogCT_MD <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">extends </font>'''</span>JDialogBase <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">implements</font>'''</span> AlgorithmInterface {<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 31 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 32 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">private</font>'''</span> PlugInAlgorithmCT_MD ctSegAlgo = <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">null</font>'''</span><nowiki>;</nowiki><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 33 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">private </font>'''</span> ModelImage image; <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07">// source image</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 34 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">private</font>'''</span> ModelImage resultImage = <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">null</font>'''</span><nowiki>; </nowiki><span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07">// result image</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 35 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">private</font>'''</span> ViewUserInterface userInterface;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 36 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 37 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">private </font>'''</span> String titles[];<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 38 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 39 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">private float</font>'''</span> correctionVal;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 40 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">private</font>'''</span> JTextField fatLValTF;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 41 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">private</font>'''</span> JTextField fatHValTF;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 42 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">private </font>'''</span> JTextField ldmLValTF;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 43 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">private </font>'''</span> JTextField ldmHValTF;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 44 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000"> private </font>'''</span> JTextField hdmLValTF;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 45 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">private</font>'''</span> JTextField hdmHValTF;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 46 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 47 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">private</font>'''</span> int fatLVal;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 48 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">private</font>'''</span> int fatHVal;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 49 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">private </font>'''</span> int ldmLVal;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 50 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">private</font>'''</span> int ldmHVal;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 51 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">private </font>'''</span> int hdmLVal;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 52 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">private</font>'''</span> int hdmHVal;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 53 <br /></font></div> |- | <div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 54 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07">/**</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 55 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"> * Creates new dialog for Median filtering using a plugin.</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 56 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"> * @param parent Parent frame.</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 57 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>* @param im Source image.</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 58 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"> */</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 59 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 60 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">public</font>'''</span> PlugInDialogCT_MD(Frame theParentFrame, ModelImage im) {<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 61 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">super</font>'''</span>(theParentFrame, <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">true</font>'''</span>);<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 62 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">if</font>'''</span> (im.getType() == ModelImage.BOOLEAN || im.isColorImage()) {<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 63 MipavUtil.displayError("Source Image must NOT be Boolean or Color");<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 64 dispose();<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 65 return;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 66 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 67 image = im;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 68 userInterface = ((ViewJFrameBase)(parentFrame)).getUserInterface();<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 69 init();<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 70 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 71 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 72 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"> /**</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 73 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>* Used primarily for the script to store variables and run the algorithm. No</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 74 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>* actual dialog will appear but the set up info and result image will be stored</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 75 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>*</nowiki></font></span> <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07">here.</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 76 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"> * @param UI The user interface, needed to create the image frame.</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 77 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>* @param im Source image.</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 78 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>*/</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 79 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">public</font>'''</span> PlugInDialogCT_MD(ViewUserInterface UI, ModelImage im) {<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 80 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">super</font>'''</span>();<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 81 userInterface = UI;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 82 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">if</font>'''</span> (im.getType() == ModelImage.BOOLEAN || im.isColorImage()) {<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 83 MipavUtil.displayError("Source Image must NOT be Boolean or Color");<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 84 dispose();<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 85 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">return</font>'''</span><nowiki>;</nowiki><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 86 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 87 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 88 image = im;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 89 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 90 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 91 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07">/**</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 92 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>* Sets up the GUI (panels, buttons, etc) and displays it on the screen.</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 93 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>*/</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 94 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">private void</font>'''</span> init(){<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 95 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 96 setForeground(Color.black);<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 97 setTitle("CT_segmentation");<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 98 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 99 JPanel inputPanel = <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">new</font>'''</span> JPanel(<span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">new</font>'''</span> GridLayout(3, 3));<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 100 inputPanel.setForeground(Color.black);<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 101 inputPanel.setBorder(buildTitledBorder("Input parameters"));<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 102 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 103 JLabel labelFat = <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">new </font>'''</span>JLabel("Fat thresholds: ");<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 104 labelFat.setForeground(Color.black);<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 105 labelFat.setFont(serif12);<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 106 inputPanel.add(labelFat);<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 107 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -24pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Â <br /></font></div> |- | <div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 108 fatLValTF = <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">new</font>'''</span> JTextField();<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 109 fatLValTF.setText("-190");<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 110 fatLValTF.setFont(serif12);<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 111 inputPanel.add(fatLValTF);<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 112 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 113 fatHValTF = <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">new</font>'''</span> JTextField();<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 114 fatHValTF.setText("-30");<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 115 fatHValTF.setFont(serif12);<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 116 inputPanel.add(fatHValTF);<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 117 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 118 JLabel labelLDM = <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">new</font>'''</span> JLabel("Low density muscle thresholds: ");<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 119 labelLDM.setForeground(Color.black);<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 120 labelLDM.setFont(serif12);<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 121 inputPanel.add(labelLDM);<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 122 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 123 ldmLValTF = <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">new</font>'''</span> JTextField();<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 124 ldmLValTF.setText("0");<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 125 ldmLValTF.setFont(serif12);<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 126 inputPanel.add(ldmLValTF);<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 127 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 128 ldmHValTF = <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">new</font>'''</span> JTextField();<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 129 ldmHValTF.setText("30");<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 130 ldmHValTF.setFont(serif12);<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 131 inputPanel.add(ldmHValTF);<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 132 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 133 JLabel labelHDM = <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">new</font>'''</span> JLabel("High density muscle thresholds: ");<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 134 labelHDM.setForeground(Color.black);<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 135 labelHDM.setFont(serif12);<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 136 inputPanel.add(labelHDM);<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 137 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 138 hdmLValTF = <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">new</font>'''</span> JTextField();<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 139 hdmLValTF.setText("31");<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 140 hdmLValTF.setFont(serif12);<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 141 inputPanel.add(hdmLValTF);<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 142 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 143 hdmHValTF = <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">new</font>'''</span> JTextField();<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 144 hdmHValTF.setText("100");<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 145 hdmHValTF.setFont(serif12);<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 146 inputPanel.add(hdmHValTF);<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 147 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 148 getContentPane().add(inputPanel, BorderLayout.CENTER);<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 149 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 150 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07">// Build the Panel that holds the OK and CANCEL Buttons</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 151 JPanel OKCancelPanel = <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">new </font>'''</span>JPanel();<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 152 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 153 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07">// size and place the OK button</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 154 buildOKButton();<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 155 OKCancelPanel.add(OKButton, BorderLayout.WEST);<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 156 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07">// size and place the CANCEL button</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 157 buildCancelButton();<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 158 OKCancelPanel.add(cancelButton, BorderLayout.EAST);<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 159 getContentPane().add(OKCancelPanel, BorderLayout.SOUTH);<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -24pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Â <br /></font></div> |- | <div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 160 pack();<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 161 setVisible(<span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">true</font>'''</span>);<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 162 setResizable(<span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">false</font>'''</span>);<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 163 System.gc();<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 164 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 165 } // end init()<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 166 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 167 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07">/**</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 168 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>* Accessor that returns the image.</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 169 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>* @return The result image.</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 170 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"> */</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 171 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">public</font>'''</span> ModelImage getResultImage() {<span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">return</font>'''</span> resultImage;}<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 172 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 173 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 174 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 175 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07">/**</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 176 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>* Accessor that sets the correction value</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 177 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>* @param num Value to set iterations to (should be between 1 and 20).</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 178 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>*/</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 179 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">public void</font>'''</span> setCorrectionValue(<span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">float</font>'''</span> num) {correctionVal = num;}<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 180 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 181 //************************************************************************<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 182 //************************** Event Processing ****************************<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 183 //************************************************************************<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 184 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 185 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07">/**</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 186 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>* Closes dialog box when the OK button is pressed and calls the algorithm.</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 187 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>* @param event Event that triggers function.</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 188 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>*/</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 189 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">public void</font>'''</span> actionPerformed(ActionEvent event) {<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 190 String command = event.getActionCommand();<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 191 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 192 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">if</font>'''</span> (command.equals("OK")) {<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 193 if (setVariables()) {<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 194 callAlgorithm();<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 195 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 196 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 197 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">else if</font>'''</span> (command.equals("Script")) {<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 198 callAlgorithm();<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 199 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 200 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">else if</font>'''</span> (command.equals("Cancel")) {<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 201 dispose();<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 202 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 203 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 204 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 205 //************************************************************************<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 206 //************************** Algorithm Events ****************************<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 207 //************************************************************************<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 208 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 209 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07">/**</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 210 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>* This method is required if the AlgorithmPerformed interface is implemented.</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 211 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>* It is called by the algorithm when it has completed or failed to to complete,</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 212 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>* so that the dialog can be display the result image and/or clean up.</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 213 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>* @param algorithm Algorithm that caused the event.</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 214 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>*/</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 215 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">public void</font>'''</span> algorithmPerformed(AlgorithmBase algorithm) {<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -24pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Â <br /></font></div> |- | <div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 216 ViewJFrameImage imageFrame = <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">null</font>'''</span><nowiki>;</nowiki><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 217 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">if </font>'''</span>( algorithm <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">instanceof</font>'''</span> PlugInAlgorithmCT_MD) {<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 218 image.clearMask();<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 219 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">if</font>'''</span>(ctSegAlgo.isCompleted() == <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">true</font>'''</span> &amp;&amp; resultImage != null) {<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 220 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07">//The algorithm has completed and produced a new image to be displayed.</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 221 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 222 updateFileInfo(image, resultImage);<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 223 resultImage.clearMask();<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 224 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">try</font>'''</span> {<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 225 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07">//resultImage.setImageName("Median: " image.getImageName());</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 226 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 227 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">int</font>'''</span> dimExtentsLUT[] = <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">new</font>'''</span> int[2];<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 228 dimExtentsLUT[0] = 4;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 229 dimExtentsLUT[1] = 256;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 230 ModelLUT LUTa = <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">new</font>'''</span> ModelLUT(ModelLUT.COOLHOT, 256, dimExtentsLUT);<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 231 imageFrame = <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">new</font>'''</span> ViewJFrameImage(resultImage, LUTa, <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">new</font>'''</span> Dimension(610,200),<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 232 userInterface);<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 233 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 234 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">catch</font>'''</span> (OutOfMemoryError error){<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 235 System.gc();<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 236 MipavUtil.displayError("Out of memory: unable to open new frame");<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 237 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 238 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 239 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">else if</font>'''</span> (resultImage == <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">null</font>'''</span>) {<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 240 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07">// These next lines set the titles in all frames where the source image</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#00ef07"> 241 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"> // is displayed to image name so as to indicate that the image is now</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#00ef07"> 242 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"> // unlocked! The image frames are enabled and then registered to the</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#00ef07"> 243 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"> // userinterface.</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 244 Vector imageFrames = image.getImageFrameVector();<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 245 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">for</font>'''</span> (<span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">int</font>'''</span> i = 0; i &lt; imageFrames.size(); i ) {<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 246 ((Frame)(imageFrames.elementAt(i))).setTitle(titles[i]);<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 247 ((Frame)(imageFrames.elementAt(i))).setEnabled(true);<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 248 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">if</font>'''</span> ( ((Frame)(imageFrames.elementAt(i))) != parentFrame) {<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 249 userInterface.registerFrame((Frame)(imageFrames.elementAt(i)));<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 250 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 251 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 252 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">if</font>'''</span> (parentFrame != <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">null</font>'''</span>) userInterface.registerFrame(parentFrame);<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 253 image.notifyImageDisplayListeners(<span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">null</font>'''</span>, <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">true</font>'''</span>);<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 254 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 255 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">else if </font>'''</span>(resultImage != <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">null</font>'''</span>){<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 256 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07">//algorithm failed but result image still has garbage</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 257 resultImage.disposeLocal(); <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07">// clean up memory</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 258 resultImage = <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">null</font>'''</span><nowiki>;</nowiki><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 259 System.gc();<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 260 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 261 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 262 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">if </font>'''</span>(ctSegAlgo.isCompleted() == <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">true</font>'''</span>) {<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 263 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">if</font>'''</span> (userInterface.isScriptRecording()) {<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 264 userInterface.getScriptDialog().append("Flow " <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 265 userInterface.getScriptDialog().getVar(image.getImageName()) " "<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 266 correctionVal "\n");<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 267 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 268 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 269 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">dispose</font>'''</span>();<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 270 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -24pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Â <br /></font></div> |- | <div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 271 } <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07">// end AlgorithmPerformed()</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 272 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 273 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 274 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07">/**</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 275 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>* Use the GUI results to set up the variables needed to run the algorithm.</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 276 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>* @return &lt;code&gt;true&lt;/code&gt; if parameters set successfully, &lt;code&gt;false</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 277 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"> * &lt;/code&gt;</font></span> <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07">otherwise.</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 278 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>*/</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 279 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">private boolean</font>'''</span> setVariables() {<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 280 String tmpStr;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 281 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 282 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 283 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"> // verify iteration is within bounds</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 284 tmpStr = fatLValTF.getText();<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 285 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">if</font>'''</span> ( testParameter(tmpStr, -4000, 4000) ){<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 286 fatLVal = Integer.valueOf(tmpStr).intValue();<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 287 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 288 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">else</font>'''</span>{<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 289 fatLValTF.requestFocus();<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 290 fatLValTF.selectAll();<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 291 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">return false</font>'''</span><nowiki>;</nowiki><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 292 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 293 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 294 tmpStr = fatHValTF.getText();<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 295 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">if</font>'''</span> ( testParameter(tmpStr, -4000, 4000) ){<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 296 fatHVal = Integer.valueOf(tmpStr).intValue();<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 297 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 298 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07">else</font></span>{<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 299 fatHValTF.requestFocus();<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 300 fatHValTF.selectAll();<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 301 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">return false</font>'''</span><nowiki>;</nowiki><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 302 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 303 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 304 tmpStr = ldmLValTF.getText();<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 305 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">if </font>'''</span>( testParameter(tmpStr, -4000, 4000) ){<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 306 ldmLVal = Integer.valueOf(tmpStr).intValue();<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 307 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 308 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">else</font>'''</span>{<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 309 ldmLValTF.requestFocus();<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 310 ldmLValTF.selectAll();<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 311 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">return false</font>'''</span><nowiki>;</nowiki><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 312 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 313 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 314 tmpStr = ldmHValTF.getText();<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 315 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">if </font>'''</span>( testParameter(tmpStr, -4000, 4000) ){<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 316 ldmHVal = Integer.valueOf(tmpStr).intValue();<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 317 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 318 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">else</font>'''</span>{<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 319 ldmHValTF.requestFocus();<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 320 ldmHValTF.selectAll();<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 321 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">return false</font>'''</span><nowiki>;</nowiki><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 322 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 323 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 324 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -24pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Â <br /></font></div> |- | <div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 325 tmpStr = hdmLValTF.getText();<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 326 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">if</font>'''</span> ( testParameter(tmpStr, -4000, 4000) ){<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 327 hdmLVal = Integer.valueOf(tmpStr).intValue();<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 328 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 329 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">else</font>'''</span>{<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 330 hdmLValTF.requestFocus();<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 331 hdmLValTF.selectAll();<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 332 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">return false</font>'''</span><nowiki>;</nowiki><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 333 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 334 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 335 tmpStr = hdmHValTF.getText();<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 336 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">if</font>'''</span> ( testParameter(tmpStr, -4000, 4000) ){<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 337 hdmHVal = Integer.valueOf(tmpStr).intValue();<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 338 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 339 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">else</font>'''</span>{<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 340 hdmHValTF.requestFocus();<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 341 hdmHValTF.selectAll();<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 342 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">return false</font>'''</span><nowiki>;</nowiki><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 343 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 344 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 345 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">return true</font>'''</span><nowiki>;</nowiki><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 346 } <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07">// end setVariables()</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 347 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 348 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07">/**</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 349 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>* Once all the necessary variables are set, call the Gaussian Blur</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 350 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>* algorithm based on what type of image this is and whether or not there</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 351 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>* is a separate destination image.</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 352 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"><nowiki>*/</nowiki></font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 353 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">private void</font>'''</span> callAlgorithm() {<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 354 String name = makeImageName(image.getImageName(), "_CTseg");<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 355 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 356 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07">// stuff to do when working on 2-D images.</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 357 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">if</font>'''</span> (image.getNDims() == 2 ) { <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07">// source image is 2D</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 358 int destExtents[] = <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">new int</font>'''</span>[2];<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 359 destExtents[0] = image.getExtents()[0]; <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07">// X dim</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 360 destExtents[1] = image.getExtents()[1]; <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07">// Y dim</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 361 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 362 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">try</font>'''</span>{<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 363 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07">// Make result image of Ubyte type</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 364 resultImage = <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">new</font>'''</span> ModelImage(ModelStorageBase.UBYTE, destExtents, name,<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 365 userInterface);<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 366 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 367 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07">// Make algorithm</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 368 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">boolean</font>'''</span> entireFlag = <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">true</font>'''</span><nowiki>;</nowiki><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 369 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 370 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07">//ctSegAlgo = new PlugInAlgorithmFlowWrapFix(resultImage, image, iters,</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#00ef07"> 371 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"> // kernelSize, kernelShape, stdDev, regionFlag);</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 372 ctSegAlgo = <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">new</font>'''</span> PlugInAlgorithmCT_MD(resultImage, image);<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 373 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 374 System.out.println("Dialog fatL = " fatLVal " fatH = " fatHVal);<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 375 ctSegAlgo.fatL = fatLVal;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 376 ctSegAlgo.fatH = fatHVal;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 377 ctSegAlgo.ldmL = ldmLVal;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 378 ctSegAlgo.ldmH = ldmHVal;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -24pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Â <br /></font></div> |- | <div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 379 ctSegAlgo.hdmL = hdmLVal;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 380 ctSegAlgo.hdmH = hdmHVal;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 381 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 382 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 383 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 384 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07">// This is very important. Adding this object as a listener allows the</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#00ef07"> 385 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"> // algorithm to </font></span>notify this object when it has completed or failed. See<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#00ef07"> 386 // algorithm performed event.<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 387 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07">// This is made possible by implementing AlgorithmedPerformed interface</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 388 ctSegAlgo.addListener(<span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">this</font>'''</span>);<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 389 setVisible(<span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">false</font>'''</span>); <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07">// Hide dialog</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 390 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 391 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">if</font>'''</span> (runInSeparateThread) {<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 392 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07">// Start the thread as a low priority because we wish to still have</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#00ef07"> 393 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"> // user interface work fast.</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 394 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">if</font>'''</span> (ctSegAlgo.startMethod(Thread.MIN_PRIORITY) == <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">false</font>'''</span>){<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 395 MipavUtil.displayError("A thread is already running on this object");<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 396 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 397 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 398 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">else</font>'''</span> {<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 399 ctSegAlgo.run();<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 400 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 401 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 402 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">catch</font>'''</span> (OutOfMemoryError x){<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 403 MipavUtil.displayError("Dialog median: unable to allocate enough memory");<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 404 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">if</font>'''</span> (resultImage != <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">null</font>'''</span>){<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 405 resultImage.disposeLocal(); <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07">// Clean up memory of result image</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 406 resultImage = <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">null</font>'''</span><nowiki>;</nowiki><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 407 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 408 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">return</font>'''</span><nowiki>;</nowiki><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 409 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 410 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 411 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">else if</font>'''</span> (image.getNDims() == 3 ) {<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 412 int destExtents[] = <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">new int</font>'''</span>[3];<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 413 destExtents[0] = image.getExtents()[0];<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 414 destExtents[1] = image.getExtents()[1];<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 415 destExtents[2] = image.getExtents()[2];<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 416 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 417 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">try</font>'''</span>{<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 418 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07">// Make result image of float type</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 419 resultImage = <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">new</font>'''</span> ModelImage(ModelStorageBase.UBYTE, destExtents, name,<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 420 userInterface);<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 421 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">boolean</font>'''</span> entireFlag = <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">true</font>'''</span><nowiki>;</nowiki><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 422 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 423 ctSegAlgo = <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">new</font>'''</span> PlugInAlgorithmCT_MD(resultImage, image);<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 424 ctSegAlgo.fatL = fatLVal;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 425 ctSegAlgo.fatH = fatHVal;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 426 ctSegAlgo.ldmL = ldmLVal;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 427 ctSegAlgo.ldmH = ldmHVal;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 428 ctSegAlgo.hdmL = hdmLVal;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 429 ctSegAlgo.hdmH = hdmHVal;<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 430 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -24pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Â <br /></font></div> |- | <div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 431 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"> // This is very important. Adding this object as a listener allows the</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 432 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"> // algorithm to notify this object when it has completed or failed.</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#00ef07"> 433 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"> // See algorithm performed event. This is made possible by implementing</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 434 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07">// AlgorithmedPerformed interface</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 435 ctSegAlgo.addListener(<span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">this</font>'''</span>);<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 436 setVisible(<span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">false</font>'''</span>); // Hide dialog<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 437 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 438 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">if </font>'''</span>(runInSeparateThread) {<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 439 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07">// Start the thread as a low priority because we wish to still have</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#00ef07"> 440 <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07"> // user interface work fast.</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 441 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">if (</font>'''</span>ctSegAlgo.startMethod(Thread.MIN_PRIORITY) == false){<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 442 MipavUtil.displayError("A thread is already running on this object");<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 443 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 444 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 445 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">else</font>'''</span> {<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 446 ctSegAlgo.run();<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 447 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 448 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 449 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">catch</font>'''</span> (OutOfMemoryError x){<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 450 MipavUtil.displayError("Dialog median: unable to allocate enough memory");<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 451 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">if</font>'''</span> (resultImage != <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">null</font>'''</span>){<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 452 resultImage.disposeLocal(); <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07">// Clean up image memory</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 453 resultImage = <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">null</font>'''</span><nowiki>;</nowiki><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 454 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 455 <span style="font-style: normal; text-decoration: none; text-transform: none; vertical-align: baseline">'''<font color="#000000">return</font>'''</span><nowiki>;</nowiki><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 456 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 457 }<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 458 } <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#00ef07">// end callAlgorithm()</font></span><br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 459 <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 30pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: -30pt; text-transform: none; vertical-align: baseline"><font color="#000000"> 460 }<br /></font></div> |} <br />
+'''Next:''' [[PlugInAlgorithmCT_MD.java]]
+== See also: ==
+*[[Understanding plug-in programs]]
+*[[Using the API documentation]]
+*[[Developing plug-in programs]]
+*[[Creating a self-contained plug-in frame]]
+*[[Installing a plug-in]]
+*[[Examples of MIPAV plug-ins]]
+**[[Plug-in CT_MD, a typical plug-in program]]
+***[[PlugInAlgorithmCT_MD.java]]
+***[[Plug-in CT_MD.java]]

Difference between revisions of "Plug-in CT MD, a typical plug-in program"

Latest revision as of 12:11, 24 June 2013

Contents

PlugInCT_MD.java

PlugInDialogCT_MD.java

PlugInAlgorithmCT_MD.java

PlugInDialogImageVOIDisplay.java

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