Difference between revisions of "MIPAV toolbars"

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<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> <br /></font></div>
  
=== Displaying MIPAV Toolbars ===
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[[Displaying MIPAV Toolbars]]
 
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<div style="font-style: normal; font-weight: normal; margin-bottom: 6pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> The Toolbars menu contains check boxes for each of the four toolbars: Image, Paint, Scripting, and VOI. Use these check boxes to select which toolbars should appear. See [MIPAV_QuickStart.html#2694188 Figure 16].<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000">
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{| border="1" cellpadding="5"
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|+ <div style="font-style: normal; margin-bottom: 3pt; margin-left: 0pt; margin-right: 0pt; margin-top: 9pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> Figure 16. Toolbars menu<br /></font>'''</div>
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<div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 1pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> <br clear="all" />{| align="center"
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[[Image:ShowingMIPAVToolbars.jpg]]
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|}<br clear="all" /><br /></font></div>
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|}
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<br /></font></div>
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By marking or clearing these check boxes, you can choose which toolbars to display and which to hide. For example, suppose you just started MIPAV a moment ago. You then open an image. The MIPAV window expands in size and displays its full complement of menus. Although it displays the VOI, Scripting, and Image toolbars, you want to work with the Paint toolbar as well as the Image toolbars. However, you don't need to use the VOI and Scripting toolbars. The next section explains how to hide and show toolbars.
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<div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> <br /></font></div>
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==== To hide the VOI and Scripting toolbars and display the Paint toolbar ====
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<div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 18pt; margin-right: 0pt; margin-top: 6pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000">  1 Select Toolbars &gt; VOI to hide the VOI toolbar. MIPAV removes the check mark from the check box and removes the VOI toolbar from the MIPAV window.<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 18pt; margin-right: 0pt; margin-top: 6pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000">  2 Select Toolbars &gt; Scripting to hide the Scripting toolbar. MIPAV removes the check mark from the check box and removes the Scripting toolbar from the MIPAV window.<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 18pt; margin-right: 0pt; margin-top: 6pt; text-align: left; text-decoration: none; text-indent: -18pt; text-transform: none; vertical-align: baseline"><font color="#000000">  3 Select Toolbars &gt; Paint to display the Paint toolbar. The program marks the check box and displays the Paint toolbar in the MIPAV window. <br /></font></div>
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Because the Image toolbar is already displayed, you do not need to do anything.
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== Selecting views ==
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<div style="font-style: normal; font-weight: normal; margin-bottom: 6pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> A <span style="font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline">''<font color="#000000">view</font>''</span> refers to the way an image file is displayed. A view indicates how many images are shown at one time and whether images are advanced manually or automatically. Depending on the view, the size and shape of the image window in which an image is displayed can vary. MIPAV allows you to display images using the following views: <br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000">
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{| border="1" cellpadding="5"
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|-
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<div class="CellBody">Icon</div>
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<div class="CellBody">View</div>
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<div class="CellBody">Icon</div>
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<div class="CellBody">View</div>
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<div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> [[Image:Magnify11Ico.jpg]]<br /></font></div>
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<div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Â <br /></font></div> <div class="CellBody">Default </div>
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<div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> [[Image:VolumeRendererGPUIco.jpg]]<br /></font></div>
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<div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Â <br /></font></div> <div class="CellBody">Surface plotter</div>
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|-
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<div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> <br clear="all" />{| align="left"
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[[Image:CineViewIco.jpg]]
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|}<br clear="all" /><br /></font></div>
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<div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Â <br /></font></div> <div class="CellBody">Animate</div>
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<div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> [[Image:VolumeRendererIco.jpg]]<br /></font></div>
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<div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Â <br /></font></div> <div class="CellBody">Volume renderer</div>
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|-
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<div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> <br clear="all" />{| align="left"
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[[Image:CineViewIco.jpg]]
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|}<br clear="all" /><br /></font></div>
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<div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Â <br /></font></div> <div class="CellBody">Cine (movie) </div>
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<div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> <br clear="all" />{| align="left"
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[[Image:TriPlanarIco.jpg]]
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|}<br clear="all" /><br /></font></div>
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<div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Â <br /></font></div> <div class="CellBody">Tri-planar</div>
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|-
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<div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> <br clear="all" />{| align="left"
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[[Image:LightBoxIco.jpg]]
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|}<br clear="all" /><br /></font></div>
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<div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Â <br /></font></div> <div class="CellBody">Lightbox </div>
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<div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> [[Image:TriPlanarViewIco.jpg]]<br /></font></div>
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<div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Â <br /></font></div> <div class="CellBody">Tri-planar dual</div>
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|-
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<div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> [[Image:LinkImagesIco.jpg]]<br /></font></div>
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<div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Â <br /></font></div> <div class="CellBody">Link to another image</div>
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<div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> <br clear="all" />{| align="left"
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[[Image:VolumeTriPlanarIcoa.jpg]]
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|}<br clear="all" /><br /></font></div>
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<div style="font-style: normal; font-weight: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Â <br /></font></div> <div class="CellBody">Volume Tri-planar </div>
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|}
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<br /></font></div>
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This section explains how to display image files in the <span style="font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline">''<font color="#000000">default</font>''</span>, <span style="font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline">''<font color="#000000">lightbox</font>''</span>, and <span style="font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline">''<font color="#000000">cine</font>''</span> view. To learn how to display image files in other views, refer to Chapter 6 in the <span style="font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline">''<font color="#000000">MIPAV User's Guide.</font>''</span>
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[[Displaying images using the default view]]
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Revision as of 19:24, 7 February 2012

MIPAV toolbars

After you open an image in MIPAV and the MIPAV window expands to display all of its menus and toolbars, such as
VOI toolbar. Volume of interest toolbar ([MIPAV_QuickStart.html#2693625 Figure 12]). The VOI toolbar contains tools that help you in selecting the specific area of interest on the image.
Paint toolbar. The Paint toolbar ([MIPAV_QuickStart.html#2693828 Figure 13]) includes tools that allow you to add, adjust, or remove colors and color intensity, erase paint, and adjust the opacity level of the paint.
Scripting toolbar. The Scripting toolbar allows you to locate and run previously recorded scripts, or macros, that contain two or more algorithms on images. See [MIPAV_QuickStart.html#2693906 Figure 14].
Image toolbar. The Image toolbar includes tools for opening, printing, saving, maximizing, and minimizing an image; converting an image from gray scale to color or from color to gray scale; and adding to and removing slices from an image or changing their order; and rotating, cropping, and flipping an image. See [MIPAV_QuickStart.html#2694161 Figure 15].

By default, the MIPAV window displays only the VOI and Image toolbars.

Icon
Name
Icon
Name
Icon
Name

{| align="center"

Default.jpg



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Â
Default Mode

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{| align="center"

| ProtractorToolIco.jpg

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Â
Protractor tool

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{| align="center"

| ChangeColorVOIIco.jpg

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Â
Change VOI color

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{| align="center"

| AnnotationToolICo.jpg

|}

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Â
Annotation Tool

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{| align="center"

| RectangleVOIIco.jpg

|}

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Â
Draw rectangle VOI

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{| align="center"

| UndoIco.jpg

|}

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Â
Undo

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{| align="center"

| PointVOI.jpg

|}

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Â
Draw a point VOI

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{| align="center"

| PolylineVOI.jpg

|}

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Â
Draw polyline VOI

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{| align="center"

| CutVOIIco.jpg

|}

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Â
Cut VOI

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{| align="center"

| InterSlicePolilineIco.jpg

|}

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Â
Draw inter-slice polyline

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{| align="center"

| LevelsetVOIIco.jpg

|}

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Â
Levelset VOI

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{| align="center"

| CopyIco.jpg

|}

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Â
Copy VOI

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{| align="center"

| LineVOIIco.jpg

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Â
Draw line VOI

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{| align="center"

| 3DrectangularVOIIco.jpg

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Draw 3D rectangular VOI

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{| align="center"

| PasteIco.jpg

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Â
Paste contour

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{| align="center"

| PropagateLeftIco.jpg

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Propagate VOI down

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{| align="center"

| PropagateBothSideIco.jpg

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Propagate both sides

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{| align="center"

| PropagateRightIco.jpg

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Â
Propagate VOI up

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{| align="center"

| SplitVOIContour.jpg

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Split VOI contour

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{| align="center"

| LifeWireVOIIco.jpg

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Live wire VOI

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{| align="center"

| VIewVOIProperties.jpg

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View VOI properties

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{| align="center"

| QuickAndVOIMaskOperationIco.jpg

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Quick AND VOI mask operation

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{| align="center"

| QuickNOTVOIMaskOperationIco.jpg

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Quick NOT VOI operation

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Â

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Â

|- | rowspan="1" colspan="6" |

Figure 12. VOI Toolbar

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Icon
Name
Icon
Name
Icon
Name

{| align="center"

AddBlankMaskIco.jpg



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Â
Â
Add a blank mask

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{| align="center"

| FillsAreaIco.jpg

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Fill an area with color

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{| align="center"

| PaintBrushEditorIco.jpg

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Â
Paint brush editor

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{| align="center"

| OpenMaskFromFileIco.jpg

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Â
Open a mask from a file

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{| align="center"

| ErasesPaintIco.jpg

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Â
Erase a paint

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{| align="center"

| ChoosePaintColorIco.jpg

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Â
Change paint color

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{| align="center"

| SaveCurrntMaskIco.jpg

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Save the current mask

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{| align="center"

| ErasePaintFormCurrentFrameIco.jpg

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Erase a paint from a current frame

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{| align="center"

| ChangeOpacityOfPaintIco.jpg

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Change opacity of the paint

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{| align="center"

| AndMaskOperationIco.jpg

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AND mask operation

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{| align="center"

| EraseAllPaint.jpg

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Â
Erase all paints

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{| align="center"

| DisplayBordersAroundPaintedAreaIco.jpg

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Display a border around painted areas

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{| align="center"

| DrawIsongBrushIco.jpg

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Draw using a brush

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{| align="center"

| PropagatePainttoPreviousSliceIco.jpg

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Propagate the paint to the previous slice

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{| align="center"

| MasksInsidePaintedAreaIco.jpg

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Masks the inside of the painted area

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{| align="center"

| LoadAdvancedPaintToolsIco.jpg

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Load advanced brush tools

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{| align="center"

| PropagatePaintBothSidesIco.jpg

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Propagate the paint both sides

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{| align="center"

| MasksOutsidePaintedAreaIco.jpg

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Masks the outside of the painted area

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{| align="center"

| PIckColorIco.jpg

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Pick up a color from an image

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{| align="center"

| PropagatePainttoNextSliceIco.jpg

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Propagate the paint to the next slice

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{| align="center"

| UndoIco.jpg

|}

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Â
Undo

|- | rowspan="1" colspan="2" |


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{| align="center"

| CalculateVolumePaintIco.jpg

|}

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Â
Calculate volume

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{| align="center"

| LoadPOwerPaintToolIco.jpg

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Â
Load power paint tools

|- | rowspan="1" colspan="6" |

Figure 13. Paint Toolbar

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Icon
Name
Icon
Name
{| align="left"

ScriptsDirectoryIco.jpg


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Open the Scripts Home catalogue

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{| align="center"

| RefreshScriptsIco.jpg

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Refresh the Scripts Home catalogue

|- | rowspan="1" colspan="3" |


{| align="center"

| CurrentScriptIco.jpg

|}

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Show the current script to run

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{| align="center"

| RusSelectedScriptIco.jpg

|}

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Run the script from Current Scripts

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Â

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Â

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Â

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Â

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{| align="center"

| StartRecordingScriptIco.jpg

|}

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Start recording the script

|- | rowspan="1" colspan="6" |

Figure 14. Scripting Toolbar

|}