Difference between revisions of "Image submission plug-in"
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=== Running the Image Submission plug-in === | === Running the Image Submission plug-in === | ||
# Run the Image Submission Package Creation tool. To run the plug-in form MIPAV, go to '''Plug-ins> Generic> FITBIR Image'''. | # Run the Image Submission Package Creation tool. To run the plug-in form MIPAV, go to '''Plug-ins> Generic> FITBIR Image'''. | ||
| − | '''Note:''' If the plug-in does not appear in the menu, you might need to [[Installing a plug-in|install the plug-in]]. | + | '''Note:''' If the Image Submission plug-in does not appear in the menu, you might need to [[Installing a plug-in|install the plug-in]]. If the installed plug-in did not appear in the MIPAV menu under '''Plug-ins> Generic''', restart MIPAV. |
| − | + | ||
# The main plug-in window appears. | # The main plug-in window appears. | ||
| − | # Use the main window to add | + | # Use the main window to add the image file(s) and appropriate metadata that form the submission package. |
| + | # Metadata can be entered manually, as a form structure or uploaded as an CSV file. | ||
| + | ## To upload an CSV file, use the Load CSV File button. | ||
| + | |||
* Enter appropriate metadata including Age in months, date of interview, extent, GUID, Dimensions, and site subject ID are all required. You may need to scroll down to access all required fields. | * Enter appropriate metadata including Age in months, date of interview, extent, GUID, Dimensions, and site subject ID are all required. You may need to scroll down to access all required fields. | ||
* Add or Remove files, select the output directory, and select finish when all files have the meta data items completed. | * Add or Remove files, select the output directory, and select finish when all files have the meta data items completed. | ||
Revision as of 12:56, 24 June 2013
This page is a stub.
The Image Submission Package Creation tool which is available via MIPAV Image Submission [[Understanding plug-in programs][plug-in]] is used to submit imaging data to - the BRICS Data Dictionary.
MIPAV Image Submission plug-in
MIPAV Image Submission plug-in is designed to help researches to upload the image submission package. The BRICS image submission package includes the brain image file and the queryable meta data that describe the image.
The plug-in supports all file formats supported by MIPAV including processed and unprocessed brain images in DICOM format.
If you are using different file format (not supported by MIPAV), please contact MIPAV support.
System requirements
A recent version of Java Runtime Environment (JRE) is required to run the plug-in.
Running the Image Submission plug-in
- Run the Image Submission Package Creation tool. To run the plug-in form MIPAV, go to Plug-ins> Generic> FITBIR Image.
Note: If the Image Submission plug-in does not appear in the menu, you might need to install the plug-in. If the installed plug-in did not appear in the MIPAV menu under Plug-ins> Generic, restart MIPAV.
- The main plug-in window appears.
- Use the main window to add the image file(s) and appropriate metadata that form the submission package.
- Metadata can be entered manually, as a form structure or uploaded as an CSV file.
- To upload an CSV file, use the Load CSV File button.
- Enter appropriate metadata including Age in months, date of interview, extent, GUID, Dimensions, and site subject ID are all required. You may need to scroll down to access all required fields.
- Add or Remove files, select the output directory, and select finish when all files have the meta data items completed.
- Select Finish, which will generate all the files necessary for validation
- The compressed image
- A JPG that can be used as a thumbnail to preview the image in the FITBIR query tool
- A CSV of the meta-data from the image. The data matches a form structure that is queryable in FITBIR's query tool.
- Validate the files in using Validation Tool.
