Difference between revisions of "Image submission plug-in"
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This page is a stub. | This page is a stub. | ||
| − | The Image Submission plug-in is used to submit imaging data to - | + | The Image Submission plug-in is used to submit imaging data to - BRICS Data Dictionary. |
== MIPAV Image Submission plug-in == | == MIPAV Image Submission plug-in == | ||
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MIPAV Image Submission plug-in is designed to help researches to upload [[Supported Formats|processed]] and unprocessed brain images in [[Other formats supported by MIPAV#DicomFormat|DICOM format]] to various databases. | MIPAV Image Submission plug-in is designed to help researches to upload [[Supported Formats|processed]] and unprocessed brain images in [[Other formats supported by MIPAV#DicomFormat|DICOM format]] to various databases. | ||
| − | + | The plug-in supports all file formats [[Supported Formats|supported by MIPAV]]. | |
| − | + | If you are using different file format ([[Supported Formats|not supported by MIPAV]]), please contact [mailto:mccreedy@mail.nih.gov?Subject=MIPAV%20class&body=Body%20Text us]. | |
=== System requirements === | === System requirements === | ||
| − | A recent version of | + | A recent version of [http://java.com/en/download/index.jsp Java Runtime Environment (JRE)] is required to run the plug-in. |
| − | === | + | === Running the Image Submission plug-in === |
| + | # Run the Image Submission plug-in. | ||
| + | * To run the plug-in form MIPAV, go to Plug-ins> Generic> FITBIR Image. | ||
* Add Files to the program. | * Add Files to the program. | ||
| − | * Enter appropriate metadata | + | * Enter appropriate metadata including Age in months, date of interview, extent, GUID, Dimensions, and site subject ID are all required. You may need to scroll down to access all required fields. |
* Add or Remove files, select the output directory, and select finish when all files have the meta data items completed. | * Add or Remove files, select the output directory, and select finish when all files have the meta data items completed. | ||
* Select Finish, which will generate all the files necessary for validation | * Select Finish, which will generate all the files necessary for validation | ||
| Line 25: | Line 27: | ||
** A CSV of the meta-data from the image. The data matches a form structure that is queryable in FITBIR's query tool. | ** A CSV of the meta-data from the image. The data matches a form structure that is queryable in FITBIR's query tool. | ||
| − | *Validate the files in | + | *Validate the files in using Validation Tool. |
[[Category:Help]] | [[Category:Help]] | ||
[[Category:Help:Stub]] | [[Category:Help:Stub]] | ||
[[Category:Help:Algorithms]] | [[Category:Help:Algorithms]] | ||
Revision as of 12:00, 24 June 2013
This page is a stub.
The Image Submission plug-in is used to submit imaging data to - BRICS Data Dictionary.
MIPAV Image Submission plug-in
MIPAV Image Submission plug-in is designed to help researches to upload processed and unprocessed brain images in DICOM format to various databases.
The plug-in supports all file formats supported by MIPAV.
If you are using different file format (not supported by MIPAV), please contact us.
System requirements
A recent version of Java Runtime Environment (JRE) is required to run the plug-in.
Running the Image Submission plug-in
- Run the Image Submission plug-in.
- To run the plug-in form MIPAV, go to Plug-ins> Generic> FITBIR Image.
- Add Files to the program.
- Enter appropriate metadata including Age in months, date of interview, extent, GUID, Dimensions, and site subject ID are all required. You may need to scroll down to access all required fields.
- Add or Remove files, select the output directory, and select finish when all files have the meta data items completed.
- Select Finish, which will generate all the files necessary for validation
- The compressed image
- A JPG that can be used as a thumbnail to preview the image in the FITBIR query tool
- A CSV of the meta-data from the image. The data matches a form structure that is queryable in FITBIR's query tool.
- Validate the files in using Validation Tool.
