Difference between revisions of "ImageJ"
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| − | [http://imagejdocu.tudor.lu/ ImageJ] is another open-source Java program for processing medical images. Many medical imaging packages (specifically those dedicated to microscopy) have extended [http://imagejdocu.tudor.lu/doku.php?id=plugin:start | + | [http://imagejdocu.tudor.lu/ ImageJ] is another open-source Java program for processing medical images. Many medical imaging packages (specifically those dedicated to microscopy) have extended [http://imagejdocu.tudor.lu/doku.php?id=plugin:start ImageJ plug-ins]. MIPAV can now run ImageJ plugins and convert MIPAV images in formats supported by ImageJ. |
<div id="LaunchImageJ"></div> | <div id="LaunchImageJ"></div> | ||
== Launching ImageJ from MIPAV == | == Launching ImageJ from MIPAV == | ||
| − | [[File: | + | [[File:ImageJicons.jpg|390px|thumb|right|The MIPAV ImageJ toolbar]] |
'''To launch ImageJ''', | '''To launch ImageJ''', | ||
| Line 18: | Line 18: | ||
<ol> | <ol> | ||
<li>Open a MIPAV image of interest;</li> | <li>Open a MIPAV image of interest;</li> | ||
| − | <li>On the ImageJ toolbar, click '''the Convert MIPAV image to ImageJ image icon'''. The ImageJ window appears.</li> | + | <li>On the MIPAV ImageJ toolbar, click '''the Convert MIPAV image to ImageJ image icon'''. The ImageJ window appears.</li> |
| − | <li> Press OK to proceed with conversion.</li> | + | <li>Press OK to proceed with conversion.</li> |
</ol> | </ol> | ||
'''Note:''' Your MIPAV image should be either UBYTE, USHORT, FLOAT or ARGB, in order to be converted to the ImageJ image. If it is not, the message window appears suggesting the conversion. In order to convert the MIPAV image to one of these types, go to Utilities > Convert Type and use the conversion options offered by the [[Converting image datasets to different data types#ConvertType | Convert Image Type dialog box]]. See also, [[Standard tasks provided through commands on the Utilities menu]]. | '''Note:''' Your MIPAV image should be either UBYTE, USHORT, FLOAT or ARGB, in order to be converted to the ImageJ image. If it is not, the message window appears suggesting the conversion. In order to convert the MIPAV image to one of these types, go to Utilities > Convert Type and use the conversion options offered by the [[Converting image datasets to different data types#ConvertType | Convert Image Type dialog box]]. See also, [[Standard tasks provided through commands on the Utilities menu]]. | ||
<br /> | <br /> | ||
| + | |||
| + | <div id="ImageJtoMIpav"></div> | ||
| + | == Converting an ImageJ image to a MIPAV image== | ||
| + | |||
| + | '''To convert an ImageJ image to MIPAV image''', | ||
| + | <ol> | ||
| + | <li>have your ImageJ image of interest open;</li> | ||
| + | <li>Make it an active MIPAV Image A image. An active image is the image that has a red frame around it. In order to make your image the active one, just click on it.</li> | ||
| + | <li>On the MIPAV ImageJ toolbar, click '''the Convert ImageJ image to MIPAV image icon'''. The converted image appears in a new window.</li> | ||
| + | <li> Now, you can save it as a MIPAV image.</li> | ||
| + | </ol> | ||
[[Category:Help]] | [[Category:Help]] | ||
Revision as of 15:04, 3 April 2012
ImageJ is another open-source Java program for processing medical images. Many medical imaging packages (specifically those dedicated to microscopy) have extended ImageJ plug-ins. MIPAV can now run ImageJ plugins and convert MIPAV images in formats supported by ImageJ.
Launching ImageJ from MIPAV
To launch ImageJ,
- Open a MIPAV image which you would like to process using ImageJ;
- On the ImageJ toolbar that appears, you will see 3 ImageJ icons;
- Click the Launch ImageJ icon. The ImageJ window appears.
Converting a MIPAV image to an ImageJ image
To convert a MIPAV image to an ImageJ image,
- Open a MIPAV image of interest;
- On the MIPAV ImageJ toolbar, click the Convert MIPAV image to ImageJ image icon. The ImageJ window appears.
- Press OK to proceed with conversion.
Note: Your MIPAV image should be either UBYTE, USHORT, FLOAT or ARGB, in order to be converted to the ImageJ image. If it is not, the message window appears suggesting the conversion. In order to convert the MIPAV image to one of these types, go to Utilities > Convert Type and use the conversion options offered by the Convert Image Type dialog box. See also, Standard tasks provided through commands on the Utilities menu.
Converting an ImageJ image to a MIPAV image
To convert an ImageJ image to MIPAV image,
- have your ImageJ image of interest open;
- Make it an active MIPAV Image A image. An active image is the image that has a red frame around it. In order to make your image the active one, just click on it.
- On the MIPAV ImageJ toolbar, click the Convert ImageJ image to MIPAV image icon. The converted image appears in a new window.
- Now, you can save it as a MIPAV image.
