Supported algorithms

Many of these algorithms are implemented for 2D, 2.5D, 3D, monochromatic, and RGB images. Refer to the Image types section, to learn about image types for a specific algorithm.

MIPAV Algorithms

• Understanding MIPAV capabilities
• Developing new tools using the API
• Overview of MIPAV Algorithms
  • Cost functions used in MIPAV algorithms
  • Interpolation methods used in MIPAV
  • Degrees of freedom
  • Algorithms used to draw VOI

• • Autocorrelation Coefficients
  • Autocovariance Coefficients
  • Barrel Distortion Correction

• • DTI: Create List File
  • DTI Color Display
  • DTI Estimate tensor - under construction
  • DTI Pipeline

• • Edge Detection: Zero X Laplacian
  • Edge Detection: Zero X Non-Maximum Suppression

• • Extract Brain: Extract Brain Surface (BET)
  • Extract Brain: Extract Brain Surface (BSE)
  • Extract Surface (Marching Cubes)
  • Face Anonymizer (BET)

• • Filters (Frequency)
  • Fast Fourier Transformation (FFT)
  • Filters (Spatial): Adaptive Noise Reduction
  • Filters (Spatial): Adaptive Path Smooth
  • Filters (Spatial) Anisotropic Diffusion
  • Filters (Spatial): Coherence-Enhancing Diffusion
  • Filters (Spatial): Gaussian Blur
  • Filters (Spatial): Gradient Magnitude
  • Filters (Spatial): Haralick Texture
  • Filters (Spatial) Laplacian
  • Filters (Spatial): Local Normalization
  • Filters (Spatial): Mean
  • Filters (Spatial): Median
  • Filters (Spatial): Mode
  • Filters (Spatial): Nonlinear Noise Reduction
  • Filters (Spatial): Nonmaximum Suppression
  • Filters (Spatial): Regularized Isotropic (Nonlinear) Diffusion
  • Filters (Spatial): Slice Averaging
  • Filters (Spatial): Unsharp Mask
  • Filters (Wavelet): De-noising BLS GSM
  • Filters (Wavelet): Thresholding
  • Fuzzy C-Means: Multispectral and Single Channel Algorithms

• • Histogram cumulative
  • Histogram Equalization: Regional Adaptive
  • Histogram Equalization: Neighborhood Adaptive
  • Histogram Matching
  • 2D Histogram
  • Histogram summary
  • Hough Transform
  • Image Calculator
  • Manual 2D Series
  • Mask

• • Microscopy Colocalization Orthogonal Regression
  • Microscopy: Fluorescence Resonance Energy Transfer (FRET)-Acceptor
  • Microscopy: FRAP (Fluorescence Recovery After Photobleaching)
  • Microscopy: Fluorescent Resonance Energy Transfer (FRET) Bleed Through and Efficiency
  • Microscopy: Blind Deconvolution

• • Midsagittal line alignment
  • Morphology
    • Background Distance map
    • Close
    • Delete Objects
    • Dilate
    • Distance Map
    • Erode
    • Evaluate Segmentation
    • Fill holes
    • Find Edges
    • ID objects
    • Morphological Filter
    • Open
    • Particle Analysis
    • Skeletonize
    • Skeletonize 3D pot field
    • Ultimate erode
  • Muscle Segmentation
  • NEI Build macular pigment maps

• • Registration: B-Spline Automatic Registration
    • Detect folding
    • B-Spline Automatic Registration Dialog box
  • Registration: Optimized automatic registration 3D and 3.5D
  • Registration: Landmark-Least Squares
  • Registration: Landmark-TPSpline
  • Registration: Manual 2D Series
  • Registration: Midsagittal line alignment
  • Registration: Reslice-Isotropic Voxels
  • Registration: Time Series Optimized Automatic Registration
  • Reslice-Isotropic Voxels
  • Segmentation: Watershed
  • Shading Correction: Inhomogeneity N3 Correction
  • Standard Deviation Threshold
  • Subsampling images
  • Threshold
  • Transform
  • Transform to power of 2
  • Transform: Conformal Mapping Algorithms
  • Transform nonlinear
  • Volume Renderer