java.lang.Object
- java.awt.Component
- - java.awt.Container
  - - java.awt.Window
    - - java.awt.Dialog
      - javax.swing.JDialog
        
        gov.nih.mipav.view.dialogs.JDialogBase
        
        gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasCopyGTstl

All Implemented Interfaces:

AlgorithmInterface, DialogDefaultsInterface, java.awt.event.ActionListener, java.awt.event.FocusListener, java.awt.event.ItemListener, java.awt.event.WindowListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, java.util.EventListener, javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants
```
public class JDialogProstate2DSlicesAtlasCopyGTstl
extends JDialogBase
implements AlgorithmInterface
```
This class copy ground truth stl file to destination directory.

Author:

Ruida Cheng

See Also:

Serialized Form

Nested Class Summary
- Nested classes/interfaces inherited from class gov.nih.mipav.view.dialogs.JDialogBase
  JDialogBase.CancelAction, JDialogBase.HelpAction, JDialogBase.OKAction
- Nested classes/interfaces inherited from class javax.swing.JDialog
  javax.swing.JDialog.AccessibleJDialog
- Nested classes/interfaces inherited from class java.awt.Dialog
  java.awt.Dialog.AccessibleAWTDialog, java.awt.Dialog.ModalExclusionType, java.awt.Dialog.ModalityType
- Nested classes/interfaces inherited from class java.awt.Window
  java.awt.Window.AccessibleAWTWindow, java.awt.Window.Type
- Nested classes/interfaces inherited from class java.awt.Container
  java.awt.Container.AccessibleAWTContainer
- Nested classes/interfaces inherited from class java.awt.Component
  java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

Fields
Modifier and Type	Field	Description
`private javax.swing.JButton`	`buttonKeyImage`
`(package private) java.util.Hashtable<java.lang.String,java.util.Hashtable<java.lang.String,java.util.Vector<java.lang.String>>>`	`imageNameHashtable`
`private javax.swing.JPanel`	`imageSelectionPanel`
`private java.util.Vector<java.lang.String>`	`keyImageVector5`
`private java.util.Vector<java.lang.String>`	`keyImageVOIVector5`
`private javax.swing.JLabel`	`labelKeyImage`	key image directory.
`(package private) java.util.Hashtable<java.lang.String,java.util.Hashtable<java.lang.String,java.lang.String>>`	`origImageTableName`
`(package private) java.util.Hashtable<java.lang.String,java.util.Hashtable<java.lang.String,java.lang.String>>`	`origVOITableName`
`private javax.swing.JFileChooser`	`saveImageChooser`
`private java.lang.String`	`saveImageDirectory`
`private static long`	`serialVersionUID`
`(package private) java.util.Hashtable<java.lang.String,java.util.Vector<ModelImage>>`	`srcImageTable`
`private javax.swing.JTextField`	`textFieldKeyImage`
`private javax.swing.JTextField`	`textFieldSaveImage`
`private ViewUserInterface`	`UI`	The main user interface.
`(package private) java.util.Hashtable<java.lang.String,java.util.Hashtable<java.lang.String,java.lang.String>>`	`voiNameHashtable`

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogBase
applyButton, bar, cancelButton, cancelFlag, closeButton, HELP, helpButton, mainDialogPanel, NEW, OKButton, parentFrame, progressBar, REPLACE, runInSeparateThread, runningScriptFlag, runQuiet, serif12, serif12B, voiManager

Fields inherited from class javax.swing.JDialog
accessibleContext, rootPane, rootPaneCheckingEnabled

Fields inherited from class java.awt.Dialog
DEFAULT_MODALITY_TYPE

Fields inherited from class java.awt.Component
BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver
ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Fields inherited from interface javax.swing.WindowConstants
DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, EXIT_ON_CLOSE, HIDE_ON_CLOSE

Constructor Summary

Constructors
Constructor Description

JDialogProstate2DSlicesAtlasCopyGTstl(java.awt.Frame theParentFrame)
Constructor.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`actionPerformed(java.awt.event.ActionEvent event)`	Dialog local actionPerformed handler.
`void`	`algorithmPerformed(AlgorithmBase algorithm)`	This method is required if the AlgorithmPerformed interface is implemented.
`void`	`buildKeyImagePanel()`	Panel contains both the 3D image dir and saved 2D slices atlas dir.
`void`	`callAlgorithm()`
`void`	`copyFile()`
`void`	`disposeLocal()`	dispose memory
`void`	`init()`	Initial panel
`private void`	`processDir_folder_5(java.io.File dir)`
`private void`	`readKeyImageDir()`	Read 3D images atlas directory.
`private void`	`recordSaveImageDir()`	Let user specify the saved 2D slices atlas, record the save directory.
`void`	`sortKeyImage_5()`
`private void`	`traverse_firstLayer(java.io.File firstDir, java.lang.String child)`
`private void`	`traverse_firstLayer_DS(java.io.File firstDir, java.lang.String child)`
`private void`	`traverse_Layer(java.io.File dir)`
`private void`	`traverse_Layer_DS(java.io.File dir)`
`private void`	`traverse_scanLayer(java.io.File secondLayer, java.lang.String hashID)`
`private void`	`traverse_secondLayer(java.io.File firstLayer, java.lang.String hashID)`
`private void`	`traverse_secondLayer_DS(java.io.File firstLayer, java.lang.String hashID)`
`private void`	`traverse_T2Layer(java.io.File T2Layer, java.lang.String hashID, java.lang.String orientationLabel)`
`private void`	`traverse_T2Layer_deeper(java.io.File T2Layer, java.lang.String hashID, java.lang.String orientationLabel)`
`private void`	`traverse_voiLayer(java.io.File secondLayer, java.lang.String hashID)`

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogBase
buildApplyButton, buildButtons, buildCancelButton, buildCancelButton, buildCloseButton, buildHelpButton, buildImageComboBox, buildOKButton, buildOKButton, buildOKCancelButtons, buildTitledBorder, buildTitledBorder, createLabel, createProgressBar, createProgressBar, createTextField, focusGained, focusLost, getDialogName, isCancelled, isQuietRunning, isRunInSeparateThread, isScriptRunning, itemStateChanged, loadDefaults, loadDefaults, makeImageName, makeString, openNewFrame, saveDefaults, saveDefaults, setLeftHandSystem, setQuietRunning, setScriptRunning, setSeparateThread, setVisible, setVisible, setVisibleMenuBar, setVisibleStandard, setVOIManager, setWCSystem, testParameter, testParameterMin, updateFFTFileInfo, updateFileInfo, updateFileInfoOtherModality, updateFileInfoStatic, updateFileInfoStatic, updateFileTypeInfo, updateFileTypeInfo, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class javax.swing.JDialog
addImpl, createRootPane, dialogInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update

Methods inherited from class java.awt.Dialog
addNotify, getModalityType, getTitle, hide, isModal, isResizable, isUndecorated, setBackground, setModal, setModalityType, setOpacity, setResizable, setShape, setTitle, setUndecorated, show, toBack

Methods inherited from class java.awt.Window
addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeNotify, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImage, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, toFront

Methods inherited from class java.awt.Container
add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component
action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setMixingCutoutShape, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

serialVersionUID
```
private static final long serialVersionUID
```
See Also:

Constant Field Values

UI
```
private ViewUserInterface UI
```
The main user interface.

labelKeyImage

private javax.swing.JLabel labelKeyImage

key image directory.

textFieldKeyImage

private javax.swing.JTextField textFieldKeyImage

buttonKeyImage

private javax.swing.JButton buttonKeyImage

imageSelectionPanel

private javax.swing.JPanel imageSelectionPanel

keyImageVector5

private java.util.Vector<java.lang.String> keyImageVector5

keyImageVOIVector5

private java.util.Vector<java.lang.String> keyImageVOIVector5

textFieldSaveImage

private javax.swing.JTextField textFieldSaveImage

saveImageChooser

private javax.swing.JFileChooser saveImageChooser

saveImageDirectory

private java.lang.String saveImageDirectory

imageNameHashtable

java.util.Hashtable<java.lang.String,java.util.Hashtable<java.lang.String,java.util.Vector<java.lang.String>>> imageNameHashtable

voiNameHashtable

java.util.Hashtable<java.lang.String,java.util.Hashtable<java.lang.String,java.lang.String>> voiNameHashtable

srcImageTable

java.util.Hashtable<java.lang.String,java.util.Vector<ModelImage>> srcImageTable

origImageTableName

java.util.Hashtable<java.lang.String,java.util.Hashtable<java.lang.String,java.lang.String>> origImageTableName

origVOITableName

java.util.Hashtable<java.lang.String,java.util.Hashtable<java.lang.String,java.lang.String>> origVOITableName

Constructor Detail
- JDialogProstate2DSlicesAtlasCopyGTstl
```
public JDialogProstate2DSlicesAtlasCopyGTstl(java.awt.Frame theParentFrame)
```
  Constructor.
  
  Parameters:
  
  theParentFrame -

Method Detail

disposeLocal
```
public void disposeLocal()
```
dispose memory

actionPerformed
```
public void actionPerformed(java.awt.event.ActionEvent event)
```
Dialog local actionPerformed handler.

Specified by:

actionPerformed in interface java.awt.event.ActionListener

Overrides:

actionPerformed in class JDialogBase

recordSaveImageDir
```
private void recordSaveImageDir()
```
Let user specify the saved 2D slices atlas, record the save directory.

readKeyImageDir
```
private void readKeyImageDir()
```
Read 3D images atlas directory.

traverse_Layer_DS

private void traverse_Layer_DS(java.io.File dir)

traverse_firstLayer_DS

private void traverse_firstLayer_DS(java.io.File firstDir,
                                    java.lang.String child)

traverse_secondLayer_DS

private void traverse_secondLayer_DS(java.io.File firstLayer,
                                     java.lang.String hashID)

traverse_Layer

private void traverse_Layer(java.io.File dir)

traverse_firstLayer

private void traverse_firstLayer(java.io.File firstDir,
                                 java.lang.String child)

traverse_secondLayer

private void traverse_secondLayer(java.io.File firstLayer,
                                  java.lang.String hashID)

traverse_scanLayer

private void traverse_scanLayer(java.io.File secondLayer,
                                java.lang.String hashID)

traverse_T2Layer

private void traverse_T2Layer(java.io.File T2Layer,
                              java.lang.String hashID,
                              java.lang.String orientationLabel)

traverse_T2Layer_deeper

private void traverse_T2Layer_deeper(java.io.File T2Layer,
                                     java.lang.String hashID,
                                     java.lang.String orientationLabel)

traverse_voiLayer

private void traverse_voiLayer(java.io.File secondLayer,
                               java.lang.String hashID)

processDir_folder_5

private void processDir_folder_5(java.io.File dir)

sortKeyImage_5
```
public void sortKeyImage_5()
```

algorithmPerformed
```
public void algorithmPerformed(AlgorithmBase algorithm)
```
This method is required if the AlgorithmPerformed interface is implemented. It is called by the algorithms when it has completed or failed to to complete, so that the dialog can be display the result image and/or clean up.

Specified by:

algorithmPerformed in interface AlgorithmInterface

Parameters:

algorithm - Algorithm that caused the event.

callAlgorithm
```
public void callAlgorithm()
```

copyFile
```
public void copyFile()
```

init
```
public void init()
```
Initial panel

buildKeyImagePanel
```
public void buildKeyImagePanel()
```
Panel contains both the 3D image dir and saved 2D slices atlas dir.

Class JDialogProstate2DSlicesAtlasCopyGTstl

Nested Class Summary

Nested classes/interfaces inherited from class gov.nih.mipav.view.dialogs.JDialogBase

Nested classes/interfaces inherited from class javax.swing.JDialog

Nested classes/interfaces inherited from class java.awt.Dialog

Nested classes/interfaces inherited from class java.awt.Window

Nested classes/interfaces inherited from class java.awt.Container

Nested classes/interfaces inherited from class java.awt.Component

Field Summary

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogBase

Fields inherited from class javax.swing.JDialog

Fields inherited from class java.awt.Dialog

Fields inherited from class java.awt.Component

Fields inherited from interface java.awt.image.ImageObserver

Fields inherited from interface javax.swing.WindowConstants

Constructor Summary

Method Summary

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogBase

Methods inherited from class javax.swing.JDialog

Methods inherited from class java.awt.Dialog

Methods inherited from class java.awt.Window

Methods inherited from class java.awt.Container

Methods inherited from class java.awt.Component

Methods inherited from class java.lang.Object

Field Detail

serialVersionUID

UI

labelKeyImage

textFieldKeyImage

buttonKeyImage

imageSelectionPanel

keyImageVector5

keyImageVOIVector5

textFieldSaveImage

saveImageChooser

saveImageDirectory

imageNameHashtable

voiNameHashtable

srcImageTable

origImageTableName

origVOITableName

Constructor Detail

JDialogProstate2DSlicesAtlasCopyGTstl

Method Detail

disposeLocal

actionPerformed

recordSaveImageDir

readKeyImageDir

traverse_Layer_DS

traverse_firstLayer_DS

traverse_secondLayer_DS

traverse_Layer

traverse_firstLayer

traverse_secondLayer

traverse_scanLayer

traverse_T2Layer

traverse_T2Layer_deeper

traverse_voiLayer

processDir_folder_5

sortKeyImage_5

algorithmPerformed

callAlgorithm

copyFile

init

buildKeyImagePanel