java.lang.Object
- gov.nih.mipav.model.structures.ModelSerialCloneable
- - gov.nih.mipav.model.file.FileInfoBase
  - - gov.nih.mipav.model.file.FileInfoXML
    - - gov.nih.mipav.model.file.FileInfoSurfaceXML
      - gov.nih.mipav.view.renderer.J3D.model.file.FileInfoSurfaceXML_J3D

All Implemented Interfaces:

java.io.Serializable, java.lang.Cloneable
```
public class FileInfoSurfaceXML_J3D
extends FileInfoSurfaceXML
```
This structure contains the information that describes how an XML surface (see surface.xsd and FileSurfaceXML.java) is stored on disk.

See Also:

FileIO, FileInfoXML, FileSurfaceXML, Serialized Form

Nested Class Summary
- Nested classes/interfaces inherited from class gov.nih.mipav.model.file.FileInfoBase
  FileInfoBase.AxisOrientation, FileInfoBase.ImageOrientation, FileInfoBase.Modality, FileInfoBase.Unit, FileInfoBase.UnitType

Field Summary

Fields
Modifier and Type Field Description

private javax.media.j3d.Material m_kMaterial
Material properties of the surface:.

private ModelTriangleMesh[] m_kMesh
Surface triangle mesh:.
- Fields inherited from class gov.nih.mipav.model.file.FileInfoSurfaceXML
  m_iUnique_ID, m_kLevelDetail, m_kOpacity, m_kType, meshIndex
- Fields inherited from class gov.nih.mipav.model.file.FileInfoXML
  imageDataFileName, imageDescription
- Fields inherited from class gov.nih.mipav.model.file.FileInfoBase
  ANGSTROMS, ANGSTROMS_STRING, AXIAL, axisOrientation, axisOrientationStr, BIOMAGNETIC_IMAGING, cameraMake, cameraModel, CENTIMETERS, CENTIMETERS_STRING, COLOR_FLOW_DOPPLER, COMPRESSION_BZIP2, COMPRESSION_GZIP, COMPRESSION_NONE, COMPRESSION_ZIP, COMPUTED_RADIOGRAPHY, COMPUTED_TOMOGRAPHY, conversionSpaceTimeUnits, CORONAL, DEGREES, DEGREES_STRING, DIAPHANOGRAPHY, DIGITAL_RADIOGRAPHY, DUPLEX_DOPPLER, ENDOSCOPY, exposureTime, EXTERNAL_CAMERA_PHOTOGRAPHY, FA, fileName, fileSuffix, FNumber, focalLength, focalLength35, GENERAL_MICROSCOPY, HARDCOPY, HOURS, HOURS_STRING, HZ, HZ_STRING, ICG, imageOrientation, INCHES, INCHES_STRING, INTRAORAL_RADIOGRAPHY, ISOSpeedRating, KILOMETERS, KILOMETERS_STRING, LASER_SURFACE_SCAN, MAGNETIC_RESONANCE, MAGNETIC_RESONANCE_ANGIOGRAPHY, MAGNETIC_RESONANCE_SPECTROSCOPY, MAMMOGRAPHY, METERS, METERS_STRING, MICROMETERS, MICROMETERS_STRING, MICROSEC, MICROSEC_STRING, MILES, MILES_STRING, MILLIMETERS, MILLIMETERS_STRING, MILLISEC, MILLISEC_STRING, MILS, MILS_STRING, MINUTES, MINUTES_STRING, modality, NANOMETERS, NANOMETERS_STRING, NANOSEC, NANOSEC_STRING, NUCLEAR_MEDICINE, ORI_A2P_TYPE, ORI_I2S_TYPE, ORI_L2R_TYPE, ORI_P2A_TYPE, ORI_R2L_TYPE, ORI_S2I_TYPE, ORI_UNKNOWN_TYPE, origin, OTHER, PANORAMIC_XRAY, POSITRON_EMISSION_TOMOGRAPHY, PPM, PPM_STRING, RADIO_FLUOROSCOPY, RADIOGRAPHIC_IMAGING, RADIOTHERAPY_DOSE, RADIOTHERAPY_IMAGE, RADIOTHERAPY_PLAN, RADIOTHERAPY_RECORD, RADIOTHERAPY_STRUCTURE_SET, RADS, RADS_STRING, RED_FREE, SAGITTAL, SECONDS, SECONDS_STRING, SINGLE_PHOTON_EMISSION_COMPUTED_TOMOGRAPHY, SLIDE_MICROSCOPY, sUnits, tagDescription, tagName, THERMOGRAPHY, TRANSFORM_ANOTHER_DATASET, TRANSFORM_MNI_152, TRANSFORM_SCANNER_ANATOMICAL, TRANSFORM_TALAIRACH_TOURNOUX, TRANSFORM_UNKNOWN, tUnits, ULTRASOUND, unitsOfMeasure, UNKNOWN_MEASURE, UNKNOWN_MODALITY, UNKNOWN_ORIENT, UNKNOWN_STRING, XRAY_ANGIOGRAPHY

Constructor Summary

Constructors
Constructor	Description
`FileInfoSurfaceXML_J3D(java.lang.String name, java.lang.String directory, int format)`	Main constructor for FileInfoSurfaceXML.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`finalize()`	Prepares the class for cleanup.
`javax.media.j3d.Material`	`getMaterial()`	Returns the material properties for the surface:
`ModelTriangleMesh[]`	`getMesh()`	Returns the ModelTriangleMesh representing the surface:
`void`	`setAmbient(javax.vecmath.Color3f kColor)`	Sets the ambient color of the surface:
`void`	`setDiffuse(javax.vecmath.Color3f kColor)`	Sets the diffuse color of the surface:
`void`	`setEmissive(javax.vecmath.Color3f kColor)`	Sets the emissive color of the surface:
`void`	`setMaterial(javax.media.j3d.Material kMaterial)`	Sets the material properties for the surface:
`void`	`setMesh(ModelTriangleMesh[] kMesh)`	Sets the ModelTriangleMesh representing the surface:
`void`	`setMesh(javax.vecmath.Point3f[] kVertices, javax.vecmath.Vector3f[] kNormals, javax.vecmath.Color4f[] kColors, int[] aiConnectivity)`	Creates the ModelTriangleMesh for the surface:
`void`	`setShininess(float fShininess)`	Sets the surface shininess:
`void`	`setSpecular(javax.vecmath.Color3f kColor)`	Sets the specular color of the surface:
`void`	`updateFileInfos(FileInfoXML fInfo)`	Used to propogate all FileInfoSurfaceXML private variables to other FileInfosSurfaceXML.

Methods inherited from class gov.nih.mipav.model.file.FileInfoSurfaceXML
displayAboutInfo, getID, getLevelDetail, getOpacity, getType, setID, setLevelDetail, setOpacity, setType

Methods inherited from class gov.nih.mipav.model.file.FileInfoXML
appendImageDescription, getImageDataFileName, getImageDescription, setImageDataFileName, setImageDescription

Methods inherited from class gov.nih.mipav.model.file.FileInfoBase
copyCoreInfo, copyCoreInfo, displayAboutInfo, displayPrimaryInfo, getAboutInfo, getAllSameDimUnits, getAreaUnitsOfMeasureStr, getAxisDirection, getAxisOrientation, getAxisOrientation, getAxisOrientationFromStr, getAxisOrientationStr, getCameraMake, getCameraModel, getCompressionType, getDataType, getDataTypeFromStr, getEndianess, getEndianessFromStr, getExposureTime, getExtents, getFileDirectory, getFileFormat, getFileName, getFileSuffix, getFNumber, getFocalLength, getFocalLength35, getImageOrientation, getImageOrientationFromStr, getImageOrientationStr, getIs2_5D, getISOSpeedRating, getLPSOrigin, getLUT, getMax, getMaxB, getMaxG, getMaxR, getMin, getMinB, getMinG, getMinR, getModality, getModalityFromStr, getModalityStr, getModalityStr, getMultiFile, getNumOfBytesPerPixel, getOffset, getOrigin, getOrigin, getOriginalEndianess, getOriginAtSlice, getPhotometric, getPixelPadValue, getPrimaryInfo, getRescaleIntercept, getRescaleSlope, getResolution, getResolutions, getSize, getSliceThickness, getUnitsOfMeasure, getUnitsOfMeasure, getUnitsOfMeasureAbbrevStr, getUnitsOfMeasureAbbrevStr, getUnitsOfMeasureFromStr, getUnitsOfMeasureStr, getUnitsOfMeasureStr, getVolumeUnitsOfMeasureStr, isDicomOrdered, oppositeOrient, sameAxis, setAxisOrientation, setAxisOrientation, setCameraMake, setCameraModel, setCompressionType, setDataType, setEndianess, setExposureTime, setExtents, setExtents, setFileDirectory, setFileFormat, setFileName, setFileSuffix, setFNumber, setFocalLength, setFocalLength35, setImageOrientation, setISOSpeedRating, setLUT, setMax, setMaxB, setMaxG, setMaxR, setMin, setMinB, setMinG, setMinR, setModality, setMultiFile, setOffset, setOrigin, setOrigin, setOriginalEndianess, setPhotometric, setPixelPadValue, setRescaleIntercept, setRescaleSlope, setResolutions, setResolutions, setSliceThickness, setTagDescription, setTagName, setUnitsOfMeasure, setUnitsOfMeasure, setUnitsOfMeasure, setUnitsOfMeasure, toString

Methods inherited from class gov.nih.mipav.model.structures.ModelSerialCloneable
clone, nativeClone

Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

- Field Detail
  - m_kMaterial
```
private javax.media.j3d.Material m_kMaterial
```
    Material properties of the surface:.
  - m_kMesh
```
private ModelTriangleMesh[] m_kMesh
```
    Surface triangle mesh:.
- Constructor Detail
  - FileInfoSurfaceXML_J3D
```
public FileInfoSurfaceXML_J3D(java.lang.String name,
                              java.lang.String directory,
                              int format)
```
    Main constructor for FileInfoSurfaceXML.
    
    Parameters:
    
    name - String file name
    
    directory - String file directory
    
    format - int file format (data type)
- Method Detail
  - finalize
```
public void finalize()
```
    Description copied from class: FileInfoSurfaceXML
    
    Prepares the class for cleanup.
    
    Overrides:
    
    finalize in class FileInfoSurfaceXML
  - getMaterial
```
public javax.media.j3d.Material getMaterial()
```
    Returns the material properties for the surface:
    
    Returns:
    
    DOCUMENT ME!
  - getMesh
```
public ModelTriangleMesh[] getMesh()
```
    Returns the ModelTriangleMesh representing the surface:
    
    Returns:
    
    DOCUMENT ME!
  - setAmbient
```
public void setAmbient(javax.vecmath.Color3f kColor)
```
    Sets the ambient color of the surface:
    
    Parameters:
    
    kColor - DOCUMENT ME!
  - setDiffuse
```
public void setDiffuse(javax.vecmath.Color3f kColor)
```
    Sets the diffuse color of the surface:
    
    Parameters:
    
    kColor - DOCUMENT ME!
  - setEmissive
```
public void setEmissive(javax.vecmath.Color3f kColor)
```
    Sets the emissive color of the surface:
    
    Parameters:
    
    kColor - DOCUMENT ME!
  - setMaterial
```
public void setMaterial(javax.media.j3d.Material kMaterial)
```
    Sets the material properties for the surface:
    
    Parameters:
    
    kMaterial - DOCUMENT ME!
  - setMesh
```
public void setMesh(ModelTriangleMesh[] kMesh)
```
    Sets the ModelTriangleMesh representing the surface:
    
    Parameters:
    
    kMesh - DOCUMENT ME!
  - setMesh
```
public void setMesh(javax.vecmath.Point3f[] kVertices,
                    javax.vecmath.Vector3f[] kNormals,
                    javax.vecmath.Color4f[] kColors,
                    int[] aiConnectivity)
```
    Creates the ModelTriangleMesh for the surface:
    
    Parameters:
    
    kVertices - Mesh coordinates
    
    kNormals - Mesh normals (may be null)
    
    kColors - Mesh colors (may be null)
    
    aiConnectivity - Mesh index connectivity array
  - setShininess
```
public void setShininess(float fShininess)
```
    Sets the surface shininess:
    
    Parameters:
    
    fShininess - DOCUMENT ME!
  - setSpecular
```
public void setSpecular(javax.vecmath.Color3f kColor)
```
    Sets the specular color of the surface:
    
    Parameters:
    
    kColor - DOCUMENT ME!
  - updateFileInfos
```
public void updateFileInfos(FileInfoXML fInfo)
```
    Used to propogate all FileInfoSurfaceXML private variables to other FileInfosSurfaceXML.
    
    Overrides:
    
    updateFileInfos in class FileInfoSurfaceXML
    
    Parameters:
    
    fInfo - FileInfoSurfaceXML file info to be copied into

Modifier and Type	Field	Description
`private javax.media.j3d.Material`	`m_kMaterial`	Material properties of the surface:.
`private ModelTriangleMesh[]`	`m_kMesh`	Surface triangle mesh:.

Class FileInfoSurfaceXML_J3D

Nested Class Summary

Nested classes/interfaces inherited from class gov.nih.mipav.model.file.FileInfoBase

Field Summary

Fields inherited from class gov.nih.mipav.model.file.FileInfoSurfaceXML

Fields inherited from class gov.nih.mipav.model.file.FileInfoXML

Fields inherited from class gov.nih.mipav.model.file.FileInfoBase

Constructor Summary

Method Summary

Methods inherited from class gov.nih.mipav.model.file.FileInfoSurfaceXML

Methods inherited from class gov.nih.mipav.model.file.FileInfoXML

Methods inherited from class gov.nih.mipav.model.file.FileInfoBase

Methods inherited from class gov.nih.mipav.model.structures.ModelSerialCloneable

Methods inherited from class java.lang.Object

Field Detail

m_kMaterial

m_kMesh

Constructor Detail

FileInfoSurfaceXML_J3D

Method Detail

finalize

getMaterial

getMesh

setAmbient

setDiffuse

setEmissive

setMaterial

setMesh

setMesh

setShininess

setSpecular

updateFileInfos