java.lang.Object
- java.awt.Component
- - java.awt.Container
  - - java.awt.Window
    - - java.awt.Dialog
      - javax.swing.JDialog
        
        gov.nih.mipav.view.dialogs.JDialogBase
        
        gov.nih.mipav.view.dialogs.JDialogPowerPaint

All Implemented Interfaces:

DialogDefaultsInterface, java.awt.event.ActionListener, java.awt.event.FocusListener, java.awt.event.ItemListener, java.awt.event.KeyListener, java.awt.event.MouseListener, java.awt.event.MouseWheelListener, java.awt.event.WindowListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, java.util.EventListener, javax.accessibility.Accessible, javax.swing.event.ChangeListener, javax.swing.RootPaneContainer, javax.swing.WindowConstants
```
public class JDialogPowerPaint
extends JDialogBase
implements java.awt.event.MouseListener, java.awt.event.MouseWheelListener, java.awt.event.KeyListener, javax.swing.event.ChangeListener
```
Dialog box for the paint power tools: morphology operations, object delete, etc.

Version:

May 2005

Author:

Pierre-Louis Bazin

See Also:

JDialogBase, AlgorithmInterface, Serialized Form

Nested Class Summary
- Nested classes/interfaces inherited from class gov.nih.mipav.view.dialogs.JDialogBase
  JDialogBase.CancelAction, JDialogBase.HelpAction, JDialogBase.OKAction
- Nested classes/interfaces inherited from class javax.swing.JDialog
  javax.swing.JDialog.AccessibleJDialog
- Nested classes/interfaces inherited from class java.awt.Dialog
  java.awt.Dialog.AccessibleAWTDialog, java.awt.Dialog.ModalExclusionType, java.awt.Dialog.ModalityType
- Nested classes/interfaces inherited from class java.awt.Window
  java.awt.Window.AccessibleAWTWindow, java.awt.Window.Type
- Nested classes/interfaces inherited from class java.awt.Container
  java.awt.Container.AccessibleAWTContainer
- Nested classes/interfaces inherited from class java.awt.Component
  java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

Fields
Modifier and Type	Field	Description
`private static int`	`ALLBACKGROUNDS`	DOCUMENT ME!
`private static int`	`BACKGROUND`	DOCUMENT ME!
`private int`	`backgroundDim`	DOCUMENT ME!
`private int`	`backgroundsDim`	DOCUMENT ME!
`private javax.swing.JPanel`	`botPanel`	DOCUMENT ME!
`private javax.swing.JButton`	`buttonDilate`	DOCUMENT ME!
`private javax.swing.JButton`	`buttonErode`	DOCUMENT ME!
`private javax.swing.JButton`	`buttonExportToMask`	DOCUMENT ME!
`private javax.swing.JButton`	`buttonExportToVOI`	DOCUMENT ME!
`private javax.swing.JButton`	`buttonFillBackground`	DOCUMENT ME!
`private javax.swing.JButton`	`buttonFillBackgrounds`	DOCUMENT ME!
`private javax.swing.JButton`	`buttonGrowRegion`	DOCUMENT ME!
`private javax.swing.JButton`	`buttonImportFromMask`	DOCUMENT ME!
`private javax.swing.JButton`	`buttonImportFromVOI`	DOCUMENT ME!
`private javax.swing.JButton`	`buttonRevert`	DOCUMENT ME!
`private javax.swing.JButton`	`buttonRmObject`	DOCUMENT ME!
`private javax.swing.JButton`	`buttonRmObjects`	DOCUMENT ME!
`private javax.swing.JToggleButton`	`buttonShortkeys`	DOCUMENT ME!
`private int`	`c2x`	DOCUMENT ME!
`private int`	`c2y`	DOCUMENT ME!
`private int`	`c2z`	DOCUMENT ME!
`private int`	`c3x`	DOCUMENT ME!
`private int`	`c3y`	DOCUMENT ME!
`private int`	`c3z`	DOCUMENT ME!
`private javax.swing.JCheckBox`	`checkSave`	DOCUMENT ME!
`private javax.swing.JCheckBox`	`checkThreshold`	handling of intensity threshold.
`private javax.swing.JComboBox`	`comboConnectType`	DOCUMENT ME!
`private javax.swing.JComboBox`	`comboDilateDimType`	DOCUMENT ME!
`private javax.swing.JComboBox`	`comboErodeDimType`	DOCUMENT ME!
`private javax.swing.JComboBox`	`comboStructureType`	DOCUMENT ME!
`private java.lang.String`	`connectType`	DOCUMENT ME!
`private java.lang.String[]`	`connectTypes`	DOCUMENT ME!
`private static int`	`delay`	autosave elements.
`private java.lang.String`	`dilateDimType`	DOCUMENT ME!
`private java.lang.String[]`	`dimTypes`	DOCUMENT ME!
`private java.lang.String`	`erodeDimType`	DOCUMENT ME!
`private javax.swing.JPanel`	`exportPanel`	DOCUMENT ME!
`private int`	`getMouseInput`	DOCUMENT ME!
`private javax.swing.ButtonGroup`	`groupBackground`	DOCUMENT ME!
`private javax.swing.ButtonGroup`	`groupBackgrounds`	DOCUMENT ME!
`private javax.swing.ButtonGroup`	`groupGrowRegion`	DOCUMENT ME!
`private javax.swing.ButtonGroup`	`groupObject`	DOCUMENT ME!
`private javax.swing.ButtonGroup`	`groupObjects`	DOCUMENT ME!
`private static int`	`GROWREGION`	DOCUMENT ME!
`private ModelImage`	`image`	DOCUMENT ME!
`private javax.swing.JLabel`	`labelConnectType`	DOCUMENT ME!
`private javax.swing.JLabel`	`labelO2D`	DOCUMENT ME!
`private javax.swing.JLabel`	`labelO3D`	DOCUMENT ME!
`private javax.swing.JLabel`	`labelStructureType`	DOCUMENT ME!
`private javax.swing.JLabel`	`labelStructuring`	DOCUMENT ME!
`private float`	`lowerThreshold`	handling of intensity threshold.
`private javax.swing.JPanel`	`mainPanel`	dialog elements.
`private static int`	`MaxObject`	DOCUMENT ME!
`private javax.swing.JPanel`	`morphoPanel`	DOCUMENT ME!
`private javax.swing.JPanel`	`movePanel`	DOCUMENT ME!
`private static int`	`NONE`	DOCUMENT ME!
`private int`	`nx`	DOCUMENT ME!
`private int`	`ny`	DOCUMENT ME!
`private int`	`nz`	DOCUMENT ME!
`private javax.swing.JPanel`	`objectPanel`	DOCUMENT ME!
`private javax.swing.JPanel`	`panelThreshold`	DOCUMENT ME!
`private java.util.BitSet`	`previous`	internal objects.
`private javax.swing.JRadioButton`	`radioBackground2D`	DOCUMENT ME!
`private javax.swing.JRadioButton`	`radioBackground3D`	DOCUMENT ME!
`private javax.swing.JRadioButton`	`radioBackgrounds2D`	DOCUMENT ME!
`private javax.swing.JRadioButton`	`radioBackgrounds3D`	DOCUMENT ME!
`private javax.swing.JRadioButton`	`radioGrowRegion2D`	DOCUMENT ME!
`private javax.swing.JRadioButton`	`radioGrowRegion3D`	DOCUMENT ME!
`private javax.swing.JRadioButton`	`radioObject2D`	DOCUMENT ME!
`private javax.swing.JRadioButton`	`radioObject3D`	DOCUMENT ME!
`private javax.swing.JRadioButton`	`radioObjects2D`	DOCUMENT ME!
`private javax.swing.JRadioButton`	`radioObjects3D`	DOCUMENT ME!
`private int`	`regionGrowDim`	parameters.
`private static int`	`REMOVE`	DOCUMENT ME!
`private static int`	`REMOVEALL`	DOCUMENT ME!
`private ModelImage`	`resultImage`	DOCUMENT ME!
`private int`	`rmObjDim`	DOCUMENT ME!
`private int`	`rmObjsDim`	DOCUMENT ME!
`private PaintAutoSave`	`save`	DOCUMENT ME!
`private java.util.Timer`	`saver`	DOCUMENT ME!
`private java.util.BitSet`	`se2xy`	DOCUMENT ME!
`private java.util.BitSet`	`se2xz`	DOCUMENT ME!
`private java.util.BitSet`	`se2yz`	DOCUMENT ME!
`private java.util.BitSet`	`se3`	DOCUMENT ME!
`private static long`	`serialVersionUID`	Use serialVersionUID for interoperability.
`private javax.swing.JSpinner`	`spinLower`	handling of intensity threshold.
`private javax.swing.JSpinner`	`spinUpper`	DOCUMENT ME!
`private float`	`structureSize`	DOCUMENT ME!
`private java.lang.String`	`structureType`	DOCUMENT ME!
`private java.lang.String[]`	`structureTypes`	DOCUMENT ME!
`private javax.swing.JTextField`	`textSave`	DOCUMENT ME!
`private javax.swing.JTextField`	`textStructuring`	DOCUMENT ME!
`private float`	`upperThreshold`	handling of intensity threshold.
`private static int`	`XY`	DOCUMENT ME!
`private static int`	`XZ`	DOCUMENT ME!
`private static int`	`ZY`	DOCUMENT ME!

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogBase
applyButton, bar, cancelButton, cancelFlag, closeButton, HELP, helpButton, mainDialogPanel, NEW, OKButton, parentFrame, progressBar, REPLACE, runInSeparateThread, runningScriptFlag, runQuiet, serif12, serif12B, voiManager

Fields inherited from class javax.swing.JDialog
accessibleContext, rootPane, rootPaneCheckingEnabled

Fields inherited from class java.awt.Dialog
DEFAULT_MODALITY_TYPE

Fields inherited from class java.awt.Component
BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver
ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Fields inherited from interface javax.swing.WindowConstants
DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, EXIT_ON_CLOSE, HIDE_ON_CLOSE

Constructor Summary

Constructors
Constructor Description

JDialogPowerPaint(java.awt.Frame theParentFrame, ModelImage im)
Creates dialog for plugin.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`actionPerformed(java.awt.event.ActionEvent event)`	Closes dialog box when the OK button is pressed and calls the algorithm.
`private int[][][]`	`connected18Object3D(boolean[][][] img, int nx, int ny, int nz)`	3D images: 18-neighborhood.
`private int[][][]`	`connected26Object3D(boolean[][][] img, int nx, int ny, int nz)`	3D images: 26-neighborhood.
`private int[][]`	`connected4Object2D(boolean[][] img, int nx, int ny)`	2D images: 4-connectivity.
`private int[][][]`	`connected6Object3D(boolean[][][] img, int nx, int ny, int nz)`	3D images: 6-neighborhood.
`private int[][]`	`connected8Object2D(boolean[][] img, int nx, int ny)`	2D images: 8-neighborhood.
`private void`	`createStructuringElement2D()`	make the structuring element for morphology.
`private void`	`createStructuringElement3D()`	make the structuring element for morphology.
`private void`	`dilateImage()`	dilation.
`private java.util.BitSet`	`dilateObject(java.util.BitSet img, int nx, int ny, int nz, java.util.BitSet mask, int dx, int dy, int dz)`	dilate binary object with a custom kernel using the BitSet structure with indexing convention index = x + nxy + nxny*z.
`private void`	`erodeImage()`	erosion.
`private java.util.BitSet`	`erodeObject(java.util.BitSet img, int nx, int ny, int nz, java.util.BitSet mask, int dx, int dy, int dz)`	erode binary object with a custom kernel using the BitSet structure with indexing convention index = x + nxy + nxny*z.
`private void`	`exportToMask()`	export to Mask.
`private void`	`exportToVOI()`	export to VOI.
`private void`	`fillAllBackgrounds(int xS, int yS, int zS, int sliceDir)`	background filling algorithm.
`private void`	`fillBackground(int xS, int yS, int zS, int sliceDir)`	background filling algorithm.
`ModelImage`	`getResultImage()`	Accessor that returns the image.
`private void`	`growRegion(int xS, int yS, int zS, int sliceDir)`	region growing algorithm.
`private void`	`importFromMask()`	import from Mask.
`private void`	`importFromVOI()`	import from VOI.
`private void`	`init()`	Sets up the GUI (panels, buttons, etc) and displays it on the screen.
`private boolean`	`isInsideIntensityThreshold(int x, int y, int z, ModelImage img, int xS, int yS, int zS)`	check if point (x,y,z) has same intensity as (xS,yS,zS)
`void`	`keyPressed(java.awt.event.KeyEvent e)`	Handle the key pressed event.
`void`	`keyReleased(java.awt.event.KeyEvent e)`	Handle the key released event.
`void`	`keyTyped(java.awt.event.KeyEvent e)`	Handle the key typed event.
`void`	`mouseClicked(java.awt.event.MouseEvent mouseEvent)`	Listening to mouse events when updating paint.
`void`	`mouseEntered(java.awt.event.MouseEvent mouseEvent)`	DOCUMENT ME!
`void`	`mouseExited(java.awt.event.MouseEvent mouseEvent)`	DOCUMENT ME!
`void`	`mousePressed(java.awt.event.MouseEvent mouseEvent)`	DOCUMENT ME!
`void`	`mouseReleased(java.awt.event.MouseEvent mouseEvent)`	DOCUMENT ME!
`void`	`mouseWheelMoved(java.awt.event.MouseWheelEvent mouseEvent)`	DOCUMENT ME!
`private void`	`propagateAll()`	propagate to all slices.
`private void`	`propagateDown()`	propagate to the next slice.
`private void`	`propagateUp()`	propagate to the next slice.
`private void`	`refreshImagePaint(ModelImage img, java.util.BitSet obj)`	refresh the displayed mask.
`private void`	`removeAllObjects(int xS, int yS, int zS, int sliceDir)`	object removal algorithm.
`private void`	`removeObject(int xS, int yS, int zS, int sliceDir)`	object removal algorithm.
`private void`	`revertImage()`	revert to previous mask.
`void`	`stateChanged(javax.swing.event.ChangeEvent e)`	state change listener for the sliders.
`private void`	`trimIntensityThreshold(ModelImage img, java.util.BitSet obj, java.util.BitSet prev)`	trim the mask using the intensity

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogBase
buildApplyButton, buildButtons, buildCancelButton, buildCancelButton, buildCloseButton, buildHelpButton, buildImageComboBox, buildOKButton, buildOKButton, buildOKCancelButtons, buildTitledBorder, buildTitledBorder, createLabel, createProgressBar, createProgressBar, createTextField, focusGained, focusLost, getDialogName, isCancelled, isQuietRunning, isRunInSeparateThread, isScriptRunning, itemStateChanged, loadDefaults, loadDefaults, makeImageName, makeString, openNewFrame, saveDefaults, saveDefaults, setLeftHandSystem, setQuietRunning, setScriptRunning, setSeparateThread, setVisible, setVisible, setVisibleMenuBar, setVisibleStandard, setVOIManager, setWCSystem, testParameter, testParameterMin, updateFFTFileInfo, updateFileInfo, updateFileInfoOtherModality, updateFileInfoStatic, updateFileInfoStatic, updateFileTypeInfo, updateFileTypeInfo, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class javax.swing.JDialog
addImpl, createRootPane, dialogInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update

Methods inherited from class java.awt.Dialog
addNotify, getModalityType, getTitle, hide, isModal, isResizable, isUndecorated, setBackground, setModal, setModalityType, setOpacity, setResizable, setShape, setTitle, setUndecorated, show, toBack

Methods inherited from class java.awt.Window
addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeNotify, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImage, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, toFront

Methods inherited from class java.awt.Container
add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component
action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setMixingCutoutShape, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

serialVersionUID
```
private static final long serialVersionUID
```
Use serialVersionUID for interoperability.

See Also:

Constant Field Values

MaxObject
```
private static final int MaxObject
```
DOCUMENT ME!

See Also:

Constant Field Values

NONE
```
private static int NONE
```
DOCUMENT ME!

BACKGROUND
```
private static int BACKGROUND
```
DOCUMENT ME!

ALLBACKGROUNDS
```
private static int ALLBACKGROUNDS
```
DOCUMENT ME!

REMOVE
```
private static int REMOVE
```
DOCUMENT ME!

REMOVEALL
```
private static int REMOVEALL
```
DOCUMENT ME!

GROWREGION
```
private static int GROWREGION
```
DOCUMENT ME!

XY
```
private static int XY
```
DOCUMENT ME!

XZ
```
private static int XZ
```
DOCUMENT ME!

ZY
```
private static int ZY
```
DOCUMENT ME!

delay
```
private static int delay
```
autosave elements.

backgroundDim
```
private int backgroundDim
```
DOCUMENT ME!

backgroundsDim
```
private int backgroundsDim
```
DOCUMENT ME!

botPanel
```
private javax.swing.JPanel botPanel
```
DOCUMENT ME!

buttonDilate

private javax.swing.JButton buttonDilate

DOCUMENT ME!

buttonErode

private javax.swing.JButton buttonErode

DOCUMENT ME!

buttonExportToMask

private javax.swing.JButton buttonExportToMask

DOCUMENT ME!

buttonExportToVOI

private javax.swing.JButton buttonExportToVOI

DOCUMENT ME!

buttonFillBackground

private javax.swing.JButton buttonFillBackground

DOCUMENT ME!

buttonFillBackgrounds

private javax.swing.JButton buttonFillBackgrounds

DOCUMENT ME!

buttonGrowRegion

private javax.swing.JButton buttonGrowRegion

DOCUMENT ME!

buttonImportFromMask

private javax.swing.JButton buttonImportFromMask

DOCUMENT ME!

buttonImportFromVOI

private javax.swing.JButton buttonImportFromVOI

DOCUMENT ME!

buttonRevert

private javax.swing.JButton buttonRevert

DOCUMENT ME!

buttonRmObject

private javax.swing.JButton buttonRmObject

DOCUMENT ME!

buttonRmObjects

private javax.swing.JButton buttonRmObjects

DOCUMENT ME!

buttonShortkeys

private javax.swing.JToggleButton buttonShortkeys

DOCUMENT ME!

c2x
```
private int c2x
```
DOCUMENT ME!

c2y
```
private int c2y
```
DOCUMENT ME!

c2z
```
private int c2z
```
DOCUMENT ME!

c3x
```
private int c3x
```
DOCUMENT ME!

c3y
```
private int c3y
```
DOCUMENT ME!

c3z
```
private int c3z
```
DOCUMENT ME!

checkSave

private javax.swing.JCheckBox checkSave

DOCUMENT ME!

checkThreshold
```
private javax.swing.JCheckBox checkThreshold
```
handling of intensity threshold.

comboConnectType

private javax.swing.JComboBox comboConnectType

DOCUMENT ME!

comboDilateDimType

private javax.swing.JComboBox comboDilateDimType

DOCUMENT ME!

comboErodeDimType

private javax.swing.JComboBox comboErodeDimType

DOCUMENT ME!

comboStructureType

private javax.swing.JComboBox comboStructureType

DOCUMENT ME!

connectType
```
private java.lang.String connectType
```
DOCUMENT ME!

connectTypes

private java.lang.String[] connectTypes

DOCUMENT ME!

dilateDimType
```
private java.lang.String dilateDimType
```
DOCUMENT ME!

dimTypes
```
private java.lang.String[] dimTypes
```
DOCUMENT ME!

erodeDimType
```
private java.lang.String erodeDimType
```
DOCUMENT ME!

exportPanel
```
private javax.swing.JPanel exportPanel
```
DOCUMENT ME!

getMouseInput
```
private int getMouseInput
```
DOCUMENT ME!

groupBackground

private javax.swing.ButtonGroup groupBackground

DOCUMENT ME!

groupBackgrounds

private javax.swing.ButtonGroup groupBackgrounds

DOCUMENT ME!

groupGrowRegion

private javax.swing.ButtonGroup groupGrowRegion

DOCUMENT ME!

groupObject

private javax.swing.ButtonGroup groupObject

DOCUMENT ME!

groupObjects

private javax.swing.ButtonGroup groupObjects

DOCUMENT ME!

image
```
private ModelImage image
```
DOCUMENT ME!

labelConnectType

private javax.swing.JLabel labelConnectType

DOCUMENT ME!

labelO2D
```
private javax.swing.JLabel labelO2D
```
DOCUMENT ME!

labelO3D
```
private javax.swing.JLabel labelO3D
```
DOCUMENT ME!

labelStructureType

private javax.swing.JLabel labelStructureType

DOCUMENT ME!

labelStructuring

private javax.swing.JLabel labelStructuring

DOCUMENT ME!

lowerThreshold
```
private float lowerThreshold
```
handling of intensity threshold.

mainPanel
```
private javax.swing.JPanel mainPanel
```
dialog elements.

morphoPanel
```
private javax.swing.JPanel morphoPanel
```
DOCUMENT ME!

movePanel
```
private javax.swing.JPanel movePanel
```
DOCUMENT ME!

nx
```
private int nx
```
DOCUMENT ME!

ny
```
private int ny
```
DOCUMENT ME!

nz
```
private int nz
```
DOCUMENT ME!

objectPanel
```
private javax.swing.JPanel objectPanel
```
DOCUMENT ME!

panelThreshold

private javax.swing.JPanel panelThreshold

DOCUMENT ME!

previous
```
private java.util.BitSet previous
```
internal objects.

radioBackground2D

private javax.swing.JRadioButton radioBackground2D

DOCUMENT ME!

radioBackground3D

private javax.swing.JRadioButton radioBackground3D

DOCUMENT ME!

radioBackgrounds2D

private javax.swing.JRadioButton radioBackgrounds2D

DOCUMENT ME!

radioBackgrounds3D

private javax.swing.JRadioButton radioBackgrounds3D

DOCUMENT ME!

radioGrowRegion2D

private javax.swing.JRadioButton radioGrowRegion2D

DOCUMENT ME!

radioGrowRegion3D

private javax.swing.JRadioButton radioGrowRegion3D

DOCUMENT ME!

radioObject2D

private javax.swing.JRadioButton radioObject2D

DOCUMENT ME!

radioObject3D

private javax.swing.JRadioButton radioObject3D

DOCUMENT ME!

radioObjects2D

private javax.swing.JRadioButton radioObjects2D

DOCUMENT ME!

radioObjects3D

private javax.swing.JRadioButton radioObjects3D

DOCUMENT ME!

regionGrowDim
```
private int regionGrowDim
```
parameters.

resultImage
```
private ModelImage resultImage
```
DOCUMENT ME!

rmObjDim
```
private int rmObjDim
```
DOCUMENT ME!

rmObjsDim
```
private int rmObjsDim
```
DOCUMENT ME!

save
```
private PaintAutoSave save
```
DOCUMENT ME!

saver
```
private java.util.Timer saver
```
DOCUMENT ME!

se2xy
```
private java.util.BitSet se2xy
```
DOCUMENT ME!

se2yz
```
private java.util.BitSet se2yz
```
DOCUMENT ME!

se2xz
```
private java.util.BitSet se2xz
```
DOCUMENT ME!

se3
```
private java.util.BitSet se3
```
DOCUMENT ME!

spinLower
```
private javax.swing.JSpinner spinLower
```
handling of intensity threshold.

spinUpper
```
private javax.swing.JSpinner spinUpper
```
DOCUMENT ME!

structureSize
```
private float structureSize
```
DOCUMENT ME!

structureType
```
private java.lang.String structureType
```
DOCUMENT ME!

structureTypes

private java.lang.String[] structureTypes

DOCUMENT ME!

textSave

private javax.swing.JTextField textSave

DOCUMENT ME!

textStructuring

private javax.swing.JTextField textStructuring

DOCUMENT ME!

upperThreshold
```
private float upperThreshold
```
handling of intensity threshold.

Constructor Detail

JDialogPowerPaint

public JDialogPowerPaint(java.awt.Frame theParentFrame,
                         ModelImage im)

Creates dialog for plugin.

Parameters:: theParentFrame - Parent frame.; im - Source image.

Method Detail
- actionPerformed
```
public void actionPerformed(java.awt.event.ActionEvent event)
```
  Closes dialog box when the OK button is pressed and calls the algorithm.
  
  Specified by:
  
  actionPerformed in interface java.awt.event.ActionListener
  
  Overrides:
  
  actionPerformed in class JDialogBase
  
  Parameters:
  
  event - Event that triggers function.
- getResultImage
```
public ModelImage getResultImage()
```
  Accessor that returns the image.
  
  Returns:
  
  The result image.
- keyPressed
```
public void keyPressed(java.awt.event.KeyEvent e)
```
  Handle the key pressed event.
  
  Specified by:
  
  keyPressed in interface java.awt.event.KeyListener
  
  Parameters:
  
  e - DOCUMENT ME!
- keyReleased
```
public void keyReleased(java.awt.event.KeyEvent e)
```
  Handle the key released event.
  
  Specified by:
  
  keyReleased in interface java.awt.event.KeyListener
  
  Parameters:
  
  e - DOCUMENT ME!
- keyTyped
```
public void keyTyped(java.awt.event.KeyEvent e)
```
  Handle the key typed event.
  
  Specified by:
  
  keyTyped in interface java.awt.event.KeyListener
  
  Parameters:
  
  e - DOCUMENT ME!
- mouseClicked
```
public void mouseClicked(java.awt.event.MouseEvent mouseEvent)
```
  Listening to mouse events when updating paint.
  
  Specified by:
  
  mouseClicked in interface java.awt.event.MouseListener
  
  Parameters:
  
  mouseEvent - MouseEvent
- mouseEntered
```
public void mouseEntered(java.awt.event.MouseEvent mouseEvent)
```
  DOCUMENT ME!
  
  Specified by:
  
  mouseEntered in interface java.awt.event.MouseListener
  
  Parameters:
  
  mouseEvent - DOCUMENT ME!
- mouseExited
```
public void mouseExited(java.awt.event.MouseEvent mouseEvent)
```
  DOCUMENT ME!
  
  Specified by:
  
  mouseExited in interface java.awt.event.MouseListener
  
  Parameters:
  
  mouseEvent - DOCUMENT ME!
- mousePressed
```
public void mousePressed(java.awt.event.MouseEvent mouseEvent)
```
  DOCUMENT ME!
  
  Specified by:
  
  mousePressed in interface java.awt.event.MouseListener
  
  Parameters:
  
  mouseEvent - DOCUMENT ME!
- mouseReleased
```
public void mouseReleased(java.awt.event.MouseEvent mouseEvent)
```
  DOCUMENT ME!
  
  Specified by:
  
  mouseReleased in interface java.awt.event.MouseListener
  
  Parameters:
  
  mouseEvent - DOCUMENT ME!
- mouseWheelMoved
```
public void mouseWheelMoved(java.awt.event.MouseWheelEvent mouseEvent)
```
  DOCUMENT ME!
  
  Specified by:
  
  mouseWheelMoved in interface java.awt.event.MouseWheelListener
  
  Parameters:
  
  mouseEvent - DOCUMENT ME!
- stateChanged
```
public void stateChanged(javax.swing.event.ChangeEvent e)
```
  state change listener for the sliders.
  
  Specified by:
  
  stateChanged in interface javax.swing.event.ChangeListener
  
  Parameters:
  
  e - DOCUMENT ME!
- connected18Object3D
```
private int[][][] connected18Object3D(boolean[][][] img,
                                      int nx,
                                      int ny,
                                      int nz)
```
  3D images: 18-neighborhood.
  
  Parameters:
  
  img - DOCUMENT ME!
  
  nx - DOCUMENT ME!
  
  ny - DOCUMENT ME!
  
  nz - DOCUMENT ME!
  
  Returns:
  
  DOCUMENT ME!
- connected26Object3D
```
private int[][][] connected26Object3D(boolean[][][] img,
                                      int nx,
                                      int ny,
                                      int nz)
```
  3D images: 26-neighborhood.
  
  Parameters:
  
  img - DOCUMENT ME!
  
  nx - DOCUMENT ME!
  
  ny - DOCUMENT ME!
  
  nz - DOCUMENT ME!
  
  Returns:
  
  DOCUMENT ME!
- connected4Object2D
```
private int[][] connected4Object2D(boolean[][] img,
                                   int nx,
                                   int ny)
```
  2D images: 4-connectivity.
  
  Parameters:
  
  img - DOCUMENT ME!
  
  nx - DOCUMENT ME!
  
  ny - DOCUMENT ME!
  
  Returns:
  
  DOCUMENT ME!
- connected6Object3D
```
private int[][][] connected6Object3D(boolean[][][] img,
                                     int nx,
                                     int ny,
                                     int nz)
```
  3D images: 6-neighborhood.
  
  Parameters:
  
  img - DOCUMENT ME!
  
  nx - DOCUMENT ME!
  
  ny - DOCUMENT ME!
  
  nz - DOCUMENT ME!
  
  Returns:
  
  DOCUMENT ME!
- connected8Object2D
```
private int[][] connected8Object2D(boolean[][] img,
                                   int nx,
                                   int ny)
```
  2D images: 8-neighborhood.
  
  Parameters:
  
  img - DOCUMENT ME!
  
  nx - DOCUMENT ME!
  
  ny - DOCUMENT ME!
  
  Returns:
  
  DOCUMENT ME!
- createStructuringElement2D
```
private void createStructuringElement2D()
```
  make the structuring element for morphology.
- createStructuringElement3D
```
private void createStructuringElement3D()
```
  make the structuring element for morphology.
- dilateImage
```
private void dilateImage()
```
  dilation.
- dilateObject
```
private java.util.BitSet dilateObject(java.util.BitSet img,
                                      int nx,
                                      int ny,
                                      int nz,
                                      java.util.BitSet mask,
                                      int dx,
                                      int dy,
                                      int dz)
```
  dilate binary object with a custom kernel using the BitSet structure with indexing convention index = x + nx*y + nx*ny*z.
  
  Parameters:
  
  img - DOCUMENT ME!
  
  nx - DOCUMENT ME!
  
  ny - DOCUMENT ME!
  
  nz - DOCUMENT ME!
  
  mask - DOCUMENT ME!
  
  dx - DOCUMENT ME!
  
  dy - DOCUMENT ME!
  
  dz - DOCUMENT ME!
  
  Returns:
  
  DOCUMENT ME!
- erodeImage
```
private void erodeImage()
```
  erosion.
- erodeObject
```
private java.util.BitSet erodeObject(java.util.BitSet img,
                                     int nx,
                                     int ny,
                                     int nz,
                                     java.util.BitSet mask,
                                     int dx,
                                     int dy,
                                     int dz)
```
  erode binary object with a custom kernel using the BitSet structure with indexing convention index = x + nx*y + nx*ny*z.
  
  Parameters:
  
  img - DOCUMENT ME!
  
  nx - DOCUMENT ME!
  
  ny - DOCUMENT ME!
  
  nz - DOCUMENT ME!
  
  mask - DOCUMENT ME!
  
  dx - DOCUMENT ME!
  
  dy - DOCUMENT ME!
  
  dz - DOCUMENT ME!
  
  Returns:
  
  DOCUMENT ME!
- exportToMask
```
private void exportToMask()
```
  export to Mask.
- exportToVOI
```
private void exportToVOI()
```
  export to VOI.
- fillAllBackgrounds
```
private void fillAllBackgrounds(int xS,
                                int yS,
                                int zS,
                                int sliceDir)
```
  background filling algorithm.
  
  Parameters:
  
  xS - ModelImage-Space x coordinate
  
  yS - ModelImage-Space y coordinate
  
  zS - ModelImage-Space z coordinate
  
  sliceDir - (XY, XZ, ZY)
- fillBackground
```
private void fillBackground(int xS,
                            int yS,
                            int zS,
                            int sliceDir)
```
  background filling algorithm.
  
  Parameters:
  
  xS - ModelImage-Space x coordinate
  
  yS - ModelImage-Space y coordinate
  
  zS - ModelImage-Space z coordinate
  
  sliceDir - (XY, XZ, ZY)
- growRegion
```
private void growRegion(int xS,
                        int yS,
                        int zS,
                        int sliceDir)
```
  region growing algorithm.
  
  Parameters:
  
  xS - ModelImage-Space x coordinate
  
  yS - ModelImage-Space y coordinate
  
  zS - ModelImage-Space z coordinate
  
  sliceDir - (XY, XZ, ZY)
- importFromMask
```
private void importFromMask()
```
  import from Mask.
- importFromVOI
```
private void importFromVOI()
```
  import from VOI.
- init
```
private void init()
```
  Sets up the GUI (panels, buttons, etc) and displays it on the screen.
- propagateAll
```
private void propagateAll()
```
  propagate to all slices.
- propagateDown
```
private void propagateDown()
```
  propagate to the next slice.
- propagateUp
```
private void propagateUp()
```
  propagate to the next slice.
- refreshImagePaint
```
private void refreshImagePaint(ModelImage img,
                               java.util.BitSet obj)
```
  refresh the displayed mask.
  
  Parameters:
  
  img - DOCUMENT ME!
  
  obj - DOCUMENT ME!
- isInsideIntensityThreshold
```
private boolean isInsideIntensityThreshold(int x,
                                           int y,
                                           int z,
                                           ModelImage img,
                                           int xS,
                                           int yS,
                                           int zS)
```
  check if point (x,y,z) has same intensity as (xS,yS,zS)
- trimIntensityThreshold
```
private void trimIntensityThreshold(ModelImage img,
                                    java.util.BitSet obj,
                                    java.util.BitSet prev)
```
  trim the mask using the intensity
  
  Parameters:
  
  img - DOCUMENT ME!
  
  obj - DOCUMENT ME!
  
  prev - DOCUMENT ME!
- removeAllObjects
```
private void removeAllObjects(int xS,
                              int yS,
                              int zS,
                              int sliceDir)
```
  object removal algorithm.
  
  Parameters:
  
  xS - ModelImage-Space x coordinate
  
  yS - ModelImage-Space y coordinate
  
  zS - ModelImage-Space z coordinate
  
  sliceDir - (XY, XZ, ZY)
- removeObject
```
private void removeObject(int xS,
                          int yS,
                          int zS,
                          int sliceDir)
```
  object removal algorithm.
  
  Parameters:
  
  xS - ModelImage-Space x coordinate
  
  yS - ModelImage-Space y coordinate
  
  zS - ModelImage-Space z coordinate
  
  sliceDir - (XY, XZ, ZY)
- revertImage
```
private void revertImage()
```
  revert to previous mask.

Class JDialogPowerPaint

Nested Class Summary

Nested classes/interfaces inherited from class gov.nih.mipav.view.dialogs.JDialogBase

Nested classes/interfaces inherited from class javax.swing.JDialog

Nested classes/interfaces inherited from class java.awt.Dialog

Nested classes/interfaces inherited from class java.awt.Window

Nested classes/interfaces inherited from class java.awt.Container

Nested classes/interfaces inherited from class java.awt.Component

Field Summary

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogBase

Fields inherited from class javax.swing.JDialog

Fields inherited from class java.awt.Dialog

Fields inherited from class java.awt.Component

Fields inherited from interface java.awt.image.ImageObserver

Fields inherited from interface javax.swing.WindowConstants

Constructor Summary

Method Summary

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogBase

Methods inherited from class javax.swing.JDialog

Methods inherited from class java.awt.Dialog

Methods inherited from class java.awt.Window

Methods inherited from class java.awt.Container

Methods inherited from class java.awt.Component

Methods inherited from class java.lang.Object

Field Detail

serialVersionUID

MaxObject

NONE

BACKGROUND

ALLBACKGROUNDS

REMOVE

REMOVEALL

GROWREGION

XY

XZ

ZY

delay

backgroundDim

backgroundsDim

botPanel

buttonDilate

buttonErode

buttonExportToMask

buttonExportToVOI

buttonFillBackground

buttonFillBackgrounds

buttonGrowRegion

buttonImportFromMask

buttonImportFromVOI

buttonRevert

buttonRmObject

buttonRmObjects

buttonShortkeys

c2x

c2y

c2z

c3x

c3y

c3z

checkSave

checkThreshold

comboConnectType

comboDilateDimType

comboErodeDimType

comboStructureType

connectType

connectTypes

dilateDimType

dimTypes

erodeDimType

exportPanel

getMouseInput

groupBackground

groupBackgrounds

groupGrowRegion

groupObject

groupObjects

image

labelConnectType

labelO2D