java.lang.Object
- java.awt.Component
- - java.awt.Container
  - - java.awt.Window
    - - java.awt.Dialog
      - javax.swing.JDialog
        
        gov.nih.mipav.view.dialogs.JDialogBase
        
        gov.nih.mipav.view.dialogs.JDialogScriptableBase
        
        gov.nih.mipav.view.dialogs.JDialogKernelRegression

All Implemented Interfaces:

AlgorithmInterface, ScriptableActionInterface, DialogDefaultsInterface, ActionDiscovery, java.awt.event.ActionListener, java.awt.event.FocusListener, java.awt.event.ItemListener, java.awt.event.WindowListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, java.util.EventListener, javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants
```
public class JDialogKernelRegression
extends JDialogScriptableBase
implements AlgorithmInterface, ActionDiscovery, ScriptableActionInterface
```
Dialog to get user input, then call the algorithm. The user has the option to generate a new image or replace the source image. Algorithms are executed in their own thread.

See Also:

AlgorithmKernelRegression, Serialized Form

Nested Class Summary
- Nested classes/interfaces inherited from class gov.nih.mipav.view.dialogs.JDialogBase
  JDialogBase.CancelAction, JDialogBase.HelpAction, JDialogBase.OKAction
- Nested classes/interfaces inherited from class javax.swing.JDialog
  javax.swing.JDialog.AccessibleJDialog
- Nested classes/interfaces inherited from class java.awt.Dialog
  java.awt.Dialog.AccessibleAWTDialog, java.awt.Dialog.ModalExclusionType, java.awt.Dialog.ModalityType
- Nested classes/interfaces inherited from class java.awt.Window
  java.awt.Window.AccessibleAWTWindow, java.awt.Window.Type
- Nested classes/interfaces inherited from class java.awt.Container
  java.awt.Container.AccessibleAWTContainer
- Nested classes/interfaces inherited from class java.awt.Component
  java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

Fields
Modifier and Type	Field	Description
`private float`	`alpha`	Structure sensitive parameter
`private float`	`classicStepSize`
`private javax.swing.ButtonGroup`	`destinationGroup`	DOCUMENT ME!
`private javax.swing.JPanel`	`destinationPanel`	DOCUMENT ME!
`private int`	`displayLoc`	DOCUMENT ME!
`private javax.swing.JCheckBox`	`equalCheckBox`
`private double`	`equalValue`
`private javax.swing.JCheckBox`	`greaterEqualCheckBox`
`private double`	`greaterEqualValue`
`private boolean`	`hasEqual`
`private boolean`	`hasGreaterEqual`
`private boolean`	`hasInfinity`
`private boolean`	`hasLesserEqual`
`private boolean`	`hasNaN`
`private ModelImage`	`image`	DOCUMENT ME!
`private boolean`	`image25D`	DOCUMENT ME!
`private javax.swing.JCheckBox`	`image25DCheckBox`	DOCUMENT ME!
`private javax.swing.JCheckBox`	`infinityCheckBox`
`private float`	`initialGlobalSmoothing`	0.8 for STEERING_KERNEL_SECOND_ORDER_L1_NORM
`private int`	`initialKernelSize`
`private int`	`iterations`	Total number of iterations
`private int`	`iterations2`	Iterations in skr2L1_regular for steepest descent method in L1 steering kernel regression in STEERING_KERNEL_SECOND_ORDER_L1_NORM.
`private float`	`iterativeGlobalSmoothing`	1.5 for STEERING_KERNEL_SECOND_ORDER_L1_NORM
`private float`	`iterativeGlobalSmoothing2`
`private int`	`iterativeKernelSize`
`private javax.swing.JRadioButton`	`iterIrregular`
`private javax.swing.JRadioButton`	`iterSteering2`
`private AlgorithmKernelRegression`	`kernelRegressionAlgo`	DOCUMENT ME!
`private javax.swing.JLabel`	`labelAlpha`
`private javax.swing.JLabel`	`labelClassicStep`
`private javax.swing.JLabel`	`labelInitialGlobal`
`private javax.swing.JLabel`	`labelInitialKernel`
`private javax.swing.JLabel`	`labelIterations`
`private javax.swing.JLabel`	`labelIterations2`
`private javax.swing.JLabel`	`labelIterativeGlobal`
`private javax.swing.JLabel`	`labelIterativeGlobal2`
`private javax.swing.JLabel`	`labelIterativeKernel`
`private javax.swing.JLabel`	`labelLambda`
`private javax.swing.JLabel`	`labelSteeringStep`
`private javax.swing.JLabel`	`labelUpscale`
`private javax.swing.JLabel`	`labelWindowSize`
`private float`	`lambda`	Regularization for the elongation parameter
`private javax.swing.JCheckBox`	`lesserEqualCheckBox`
`private double`	`lesserEqualValue`
`private int`	`method`
`private javax.swing.ButtonGroup`	`methodGroup`
`private javax.swing.JCheckBox`	`NaNCheckBox`
`private javax.swing.JRadioButton`	`newImage`	DOCUMENT ME!
`private javax.swing.JPanel`	`paramPanel`	DOCUMENT ME!
`private javax.swing.JRadioButton`	`regSampled2Classic`
`private javax.swing.JRadioButton`	`replaceImage`	DOCUMENT ME!
`private ModelImage`	`resultImage`	DOCUMENT ME!
`private javax.swing.JRadioButton`	`steering2L1Norm`
`private float`	`steeringStepSize`
`private javax.swing.JTextField`	`textAlpha`
`private javax.swing.JTextField`	`textClassicStep`
`private javax.swing.JTextField`	`textEqual`
`private javax.swing.JTextField`	`textGreaterEqual`
`private javax.swing.JTextField`	`textInitialGlobal`
`private javax.swing.JTextField`	`textInitialKernel`
`private javax.swing.JTextField`	`textIterations`
`private javax.swing.JTextField`	`textIterations2`
`private javax.swing.JTextField`	`textIterativeGlobal`
`private javax.swing.JTextField`	`textIterativeGlobal2`
`private javax.swing.JTextField`	`textIterativeKernel`
`private javax.swing.JTextField`	`textLambda`
`private javax.swing.JTextField`	`textLesserEqual`
`private javax.swing.JTextField`	`textSteeringStep`
`private javax.swing.JTextField`	`textUpscale`
`private javax.swing.JTextField`	`textWindowSize`
`private java.lang.String[]`	`titles`	DOCUMENT ME!
`private int`	`upscale`	Upscaling factor
`private ViewUserInterface`	`userInterface`	DOCUMENT ME!
`private int`	`windowSize`	Size of local orientation analysis window

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogScriptableBase
displayInNewFrame, isComplete, scriptParameters

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogBase
applyButton, bar, cancelButton, cancelFlag, closeButton, HELP, helpButton, mainDialogPanel, NEW, OKButton, parentFrame, progressBar, REPLACE, runInSeparateThread, runningScriptFlag, runQuiet, serif12, serif12B, voiManager

Fields inherited from class javax.swing.JDialog
accessibleContext, rootPane, rootPaneCheckingEnabled

Fields inherited from class java.awt.Dialog
DEFAULT_MODALITY_TYPE

Fields inherited from class java.awt.Component
BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver
ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Fields inherited from interface javax.swing.WindowConstants
DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, EXIT_ON_CLOSE, HIDE_ON_CLOSE

Constructor Summary

Constructors
Constructor	Description
`JDialogKernelRegression()`	Empty constructor needed for dynamic instantiation (used during scripting).
`JDialogKernelRegression(java.awt.Frame theParentFrame, ModelImage im)`	Creates a new JDialogKernelRegression object.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`actionPerformed(java.awt.event.ActionEvent event)`	Closes dialog box when the OK button is pressed, sets variables and calls algorithm.
`void`	`algorithmPerformed(AlgorithmBase algorithm)`	This method is required if the AlgorithmPerformed interface is implemented.
`protected void`	`callAlgorithm()`	Once all the necessary variables are set, call the Kernel Regression algorithm based on what type of image this is and whether or not there is a separate destination image.
`ParameterTable`	`createInputParameters()`	Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in `setGUIFromParams()`).
`ParameterTable`	`createOutputParameters()`	Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
`protected void`	`doPostAlgorithmActions()`	Store the result image in the script runner's image table now that the action execution is finished.
`ActionMetadata`	`getActionMetadata()`	Return meta-information about this discoverable action for categorization and labeling purposes.
`java.lang.String`	`getOutputImageName(java.lang.String imageParamName)`	Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
`ModelImage`	`getResultImage()`	Accessor that returns the image.
`private void`	`init()`	Initializes the GUI by creating the components, placing them in the dialog, and displaying them.
`boolean`	`isActionComplete()`	Returns whether the action has successfully completed its execution.
`void`	`setAlpha(float alpha)`
`void`	`setClassicStepSize(float classicStepSize)`
`void`	`setDisplayLocNew()`	Accessor that sets the display loc variable to new, so that a new image is created once the algorithm completes.
`void`	`setDisplayLocReplace()`	Accessor that sets the display loc variable to replace, so the current image is replaced once the algorithm completes.
`void`	`setEqualValue(double equalValue)`
`void`	`setGreaterEqualValue(double greaterEqualValue)`
`protected void`	`setGUIFromParams()`	Set the dialog GUI using the script parameters while running this algorithm as part of a script.
`void`	`setHasEqual(boolean hasEqual)`
`void`	`setHasGreaterEqual(boolean hasGreaterEqual)`
`void`	`setHasInfinity(boolean hasInfinity)`
`void`	`setHasLesserEqual(boolean hasLesserEqual)`
`void`	`setHasNaN(boolean hasNaN)`
`void`	`setImage25D(boolean image25D)`	Accessor that sets whether 3D images are 3D or 2.5D filtered.
`void`	`setInitialGlobalSmoothing(float initialGlobalSmoothing)`
`void`	`setInitialKernelSize(int initialKernelSize)`
`void`	`setIterations(int iterations)`
`void`	`setIterations2(int iterations2)`
`void`	`setIterativeGlobalSmoothing(float iterativeGlobalSmoothing)`
`void`	`setIterativeGlobalSmoothing2(float iterativeGlobalSmoothing2)`
`void`	`setIterativeKernelSize(int iterativeKernelSize)`
`void`	`setLambda(float lambda)`
`void`	`setLesserEqualValue(double lesserEqualValue)`
`void`	`setMethod(int method)`
`void`	`setSteeringStepSize(float steeringStepSize)`
`void`	`setUpscale(int upscale)`
`private boolean`	`setVariables()`	Use the GUI results to set up the variables needed to run the algorithm.
`void`	`setWindowSize(int windowSize)`
`protected void`	`storeParamsFromGUI()`	Record the parameters just used to run this algorithm in a script.

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogScriptableBase
getDialogActionString, insertScriptLine, isComplete, scriptRun, setComplete

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogBase
buildApplyButton, buildButtons, buildCancelButton, buildCancelButton, buildCloseButton, buildHelpButton, buildImageComboBox, buildOKButton, buildOKButton, buildOKCancelButtons, buildTitledBorder, buildTitledBorder, createLabel, createProgressBar, createProgressBar, createTextField, focusGained, focusLost, getDialogName, isCancelled, isQuietRunning, isRunInSeparateThread, isScriptRunning, itemStateChanged, loadDefaults, loadDefaults, makeImageName, makeString, openNewFrame, saveDefaults, saveDefaults, setLeftHandSystem, setQuietRunning, setScriptRunning, setSeparateThread, setVisible, setVisible, setVisibleMenuBar, setVisibleStandard, setVOIManager, setWCSystem, testParameter, testParameterMin, updateFFTFileInfo, updateFileInfo, updateFileInfoOtherModality, updateFileInfoStatic, updateFileInfoStatic, updateFileTypeInfo, updateFileTypeInfo, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class javax.swing.JDialog
addImpl, createRootPane, dialogInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update

Methods inherited from class java.awt.Dialog
addNotify, getModalityType, getTitle, hide, isModal, isResizable, isUndecorated, setBackground, setModal, setModalityType, setOpacity, setResizable, setShape, setTitle, setUndecorated, show, toBack

Methods inherited from class java.awt.Window
addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeNotify, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImage, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, toFront

Methods inherited from class java.awt.Container
add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component
action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setMixingCutoutShape, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface gov.nih.mipav.view.dialogs.ActionDiscovery
scriptRun

Methods inherited from interface gov.nih.mipav.model.scripting.ScriptableActionInterface
insertScriptLine, scriptRun

- Field Detail
  - kernelRegressionAlgo
```
private AlgorithmKernelRegression kernelRegressionAlgo
```
    DOCUMENT ME!
  - destinationGroup
```
private javax.swing.ButtonGroup destinationGroup
```
    DOCUMENT ME!
  - destinationPanel
```
private javax.swing.JPanel destinationPanel
```
    DOCUMENT ME!
  - displayLoc
```
private int displayLoc
```
    DOCUMENT ME!
  - image
```
private ModelImage image
```
    DOCUMENT ME!
  - image25D
```
private boolean image25D
```
    DOCUMENT ME!
  - image25DCheckBox
```
private javax.swing.JCheckBox image25DCheckBox
```
    DOCUMENT ME!
  - method
```
private int method
```
  - labelInitialGlobal
```
private javax.swing.JLabel labelInitialGlobal
```
  - textInitialGlobal
```
private javax.swing.JTextField textInitialGlobal
```
  - initialGlobalSmoothing
```
private float initialGlobalSmoothing
```
    0.8 for STEERING_KERNEL_SECOND_ORDER_L1_NORM
  - labelIterativeGlobal
```
private javax.swing.JLabel labelIterativeGlobal
```
  - textIterativeGlobal
```
private javax.swing.JTextField textIterativeGlobal
```
  - iterativeGlobalSmoothing
```
private float iterativeGlobalSmoothing
```
    1.5 for STEERING_KERNEL_SECOND_ORDER_L1_NORM
  - labelIterativeGlobal2
```
private javax.swing.JLabel labelIterativeGlobal2
```
  - textIterativeGlobal2
```
private javax.swing.JTextField textIterativeGlobal2
```
  - iterativeGlobalSmoothing2
```
private float iterativeGlobalSmoothing2
```
  - labelUpscale
```
private javax.swing.JLabel labelUpscale
```
  - textUpscale
```
private javax.swing.JTextField textUpscale
```
  - upscale
```
private int upscale
```
    Upscaling factor
  - labelInitialKernel
```
private javax.swing.JLabel labelInitialKernel
```
  - textInitialKernel
```
private javax.swing.JTextField textInitialKernel
```
  - initialKernelSize
```
private int initialKernelSize
```
  - labelIterativeKernel
```
private javax.swing.JLabel labelIterativeKernel
```
  - textIterativeKernel
```
private javax.swing.JTextField textIterativeKernel
```
  - iterativeKernelSize
```
private int iterativeKernelSize
```
  - labelIterations
```
private javax.swing.JLabel labelIterations
```
  - textIterations
```
private javax.swing.JTextField textIterations
```
  - iterations
```
private int iterations
```
    Total number of iterations
  - labelIterations2
```
private javax.swing.JLabel labelIterations2
```
  - textIterations2
```
private javax.swing.JTextField textIterations2
```
  - iterations2
```
private int iterations2
```
    Iterations in skr2L1_regular for steepest descent method in L1 steering kernel regression in STEERING_KERNEL_SECOND_ORDER_L1_NORM.
  - labelWindowSize
```
private javax.swing.JLabel labelWindowSize
```
  - textWindowSize
```
private javax.swing.JTextField textWindowSize
```
  - windowSize
```
private int windowSize
```
    Size of local orientation analysis window
  - labelLambda
```
private javax.swing.JLabel labelLambda
```
  - textLambda
```
private javax.swing.JTextField textLambda
```
  - lambda
```
private float lambda
```
    Regularization for the elongation parameter
  - labelAlpha
```
private javax.swing.JLabel labelAlpha
```
  - textAlpha
```
private javax.swing.JTextField textAlpha
```
  - alpha
```
private float alpha
```
    Structure sensitive parameter
  - methodGroup
```
private javax.swing.ButtonGroup methodGroup
```
  - iterSteering2
```
private javax.swing.JRadioButton iterSteering2
```
  - iterIrregular
```
private javax.swing.JRadioButton iterIrregular
```
  - regSampled2Classic
```
private javax.swing.JRadioButton regSampled2Classic
```
  - steering2L1Norm
```
private javax.swing.JRadioButton steering2L1Norm
```
  - labelClassicStep
```
private javax.swing.JLabel labelClassicStep
```
  - textClassicStep
```
private javax.swing.JTextField textClassicStep
```
  - classicStepSize
```
private float classicStepSize
```
  - labelSteeringStep
```
private javax.swing.JLabel labelSteeringStep
```
  - textSteeringStep
```
private javax.swing.JTextField textSteeringStep
```
  - steeringStepSize
```
private float steeringStepSize
```
  - NaNCheckBox
```
private javax.swing.JCheckBox NaNCheckBox
```
  - hasNaN
```
private boolean hasNaN
```
  - infinityCheckBox
```
private javax.swing.JCheckBox infinityCheckBox
```
  - hasInfinity
```
private boolean hasInfinity
```
  - greaterEqualCheckBox
```
private javax.swing.JCheckBox greaterEqualCheckBox
```
  - hasGreaterEqual
```
private boolean hasGreaterEqual
```
  - textGreaterEqual
```
private javax.swing.JTextField textGreaterEqual
```
  - greaterEqualValue
```
private double greaterEqualValue
```
  - equalCheckBox
```
private javax.swing.JCheckBox equalCheckBox
```
  - hasEqual
```
private boolean hasEqual
```
  - textEqual
```
private javax.swing.JTextField textEqual
```
  - equalValue
```
private double equalValue
```
  - lesserEqualCheckBox
```
private javax.swing.JCheckBox lesserEqualCheckBox
```
  - hasLesserEqual
```
private boolean hasLesserEqual
```
  - textLesserEqual
```
private javax.swing.JTextField textLesserEqual
```
  - lesserEqualValue
```
private double lesserEqualValue
```
  - newImage
```
private javax.swing.JRadioButton newImage
```
    DOCUMENT ME!
  - paramPanel
```
private javax.swing.JPanel paramPanel
```
    DOCUMENT ME!
  - replaceImage
```
private javax.swing.JRadioButton replaceImage
```
    DOCUMENT ME!
  - resultImage
```
private ModelImage resultImage
```
    DOCUMENT ME!
  - titles
```
private java.lang.String[] titles
```
    DOCUMENT ME!
  - userInterface
```
private ViewUserInterface userInterface
```
    DOCUMENT ME!
- Constructor Detail
  - JDialogKernelRegression
```
public JDialogKernelRegression()
```
    Empty constructor needed for dynamic instantiation (used during scripting).
  - JDialogKernelRegression
```
public JDialogKernelRegression(java.awt.Frame theParentFrame,
                               ModelImage im)
```
    Creates a new JDialogKernelRegression object.
    
    Parameters:
    
    theParentFrame - Parent frame.
    
    im - Source image.
- Method Detail
  - actionPerformed
```
public void actionPerformed(java.awt.event.ActionEvent event)
```
    Closes dialog box when the OK button is pressed, sets variables and calls algorithm.
    
    Specified by:
    
    actionPerformed in interface java.awt.event.ActionListener
    
    Overrides:
    
    actionPerformed in class JDialogBase
    
    Parameters:
    
    event - Event that triggers function.
  - algorithmPerformed
```
public void algorithmPerformed(AlgorithmBase algorithm)
```
    This method is required if the AlgorithmPerformed interface is implemented. It is called by the algorithms when it has completed or failed to to complete, so that the dialog can be display the result image and/or clean up.
    
    Specified by:
    
    algorithmPerformed in interface AlgorithmInterface
    
    Parameters:
    
    algorithm - Algorithm that caused the event.
  - getResultImage
```
public ModelImage getResultImage()
```
    Accessor that returns the image.
    
    Returns:
    
    The result image.
  - setDisplayLocNew
```
public void setDisplayLocNew()
```
    Accessor that sets the display loc variable to new, so that a new image is created once the algorithm completes.
  - setDisplayLocReplace
```
public void setDisplayLocReplace()
```
    Accessor that sets the display loc variable to replace, so the current image is replaced once the algorithm completes.
  - setImage25D
```
public void setImage25D(boolean image25D)
```
    Accessor that sets whether 3D images are 3D or 2.5D filtered.
    
    Parameters:
    
    image25D - true for 2.5D filtering
  - setMethod
```
public void setMethod(int method)
```
    Parameters:
    
    method -
  - setInitialGlobalSmoothing
```
public void setInitialGlobalSmoothing(float initialGlobalSmoothing)
```
    Parameters:
    
    initialGlobalSmoothing -
  - setIterativeGlobalSmoothing
```
public void setIterativeGlobalSmoothing(float iterativeGlobalSmoothing)
```
    Parameters:
    
    iterativeGlobalSmoothing -
  - setIterativeGlobalSmoothing2
```
public void setIterativeGlobalSmoothing2(float iterativeGlobalSmoothing2)
```
    Parameters:
    
    iterativeGlobalSmoothing2 -
  - setUpscale
```
public void setUpscale(int upscale)
```
    Parameters:
    
    upscale -
  - setInitialKernelSize
```
public void setInitialKernelSize(int initialKernelSize)
```
    Parameters:
    
    initialKernelSize -
  - setIterativeKernelSize
```
public void setIterativeKernelSize(int iterativeKernelSize)
```
    Parameters:
    
    iterativeKernelSize -
  - setIterations
```
public void setIterations(int iterations)
```
    Parameters:
    
    iterations -
  - setIterations2
```
public void setIterations2(int iterations2)
```
    Parameters:
    
    iterations2 -
  - setWindowSize
```
public void setWindowSize(int windowSize)
```
    Parameters:
    
    windowSize -
  - setLambda
```
public void setLambda(float lambda)
```
    Parameters:
    
    lambda -
  - setAlpha
```
public void setAlpha(float alpha)
```
    Parameters:
    
    alpha -
  - setClassicStepSize
```
public void setClassicStepSize(float classicStepSize)
```
    Parameters:
    
    classicStepSize -
  - setSteeringStepSize
```
public void setSteeringStepSize(float steeringStepSize)
```
    Parameters:
    
    steeringStepSize -
  - setHasNaN
```
public void setHasNaN(boolean hasNaN)
```
    Parameters:
    
    hasNaN -
  - setHasInfinity
```
public void setHasInfinity(boolean hasInfinity)
```
    Parameters:
    
    hasInfinity -
  - setHasGreaterEqual
```
public void setHasGreaterEqual(boolean hasGreaterEqual)
```
    Parameters:
    
    hasGreaterEqual -
  - setGreaterEqualValue
```
public void setGreaterEqualValue(double greaterEqualValue)
```
    Parameters:
    
    greaterEqualValue -
  - setHasEqual
```
public void setHasEqual(boolean hasEqual)
```
    Parameters:
    
    hasEqual -
  - setEqualValue
```
public void setEqualValue(double equalValue)
```
    Parameters:
    
    equalValue -
  - setHasLesserEqual
```
public void setHasLesserEqual(boolean hasLesserEqual)
```
    Parameters:
    
    hasLesserEqual -
  - setLesserEqualValue
```
public void setLesserEqualValue(double lesserEqualValue)
```
    Parameters:
    
    lesserEqualValue -
  - callAlgorithm
```
protected void callAlgorithm()
```
    Once all the necessary variables are set, call the Kernel Regression algorithm based on what type of image this is and whether or not there is a separate destination image.
    
    Specified by:
    
    callAlgorithm in class JDialogScriptableBase
  - doPostAlgorithmActions
```
protected void doPostAlgorithmActions()
```
    Store the result image in the script runner's image table now that the action execution is finished.
    
    Overrides:
    
    doPostAlgorithmActions in class JDialogScriptableBase
  - setGUIFromParams
```
protected void setGUIFromParams()
```
    Set the dialog GUI using the script parameters while running this algorithm as part of a script.
    
    Specified by:
    
    setGUIFromParams in class JDialogScriptableBase
  - storeParamsFromGUI
```
protected void storeParamsFromGUI()
                           throws ParserException
```
    Record the parameters just used to run this algorithm in a script.
    
    Specified by:
    
    storeParamsFromGUI in class JDialogScriptableBase
    
    Throws:
    
    ParserException - If there is a problem creating/recording the new parameters.
  - init
```
private void init()
```
    Initializes the GUI by creating the components, placing them in the dialog, and displaying them.
  - setVariables
```
private boolean setVariables()
```
    Use the GUI results to set up the variables needed to run the algorithm.
    
    Returns:
    
    true if parameters set successfully, false otherwise.
  - getActionMetadata
```
public ActionMetadata getActionMetadata()
```
    Return meta-information about this discoverable action for categorization and labeling purposes.
    
    Specified by:
    
    getActionMetadata in interface ActionDiscovery
    
    Returns:
    
    Metadata for this action.
  - createInputParameters
```
public ParameterTable createInputParameters()
```
    Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in setGUIFromParams()).
    
    Specified by:
    
    createInputParameters in interface ActionDiscovery
    
    Returns:
    
    A parameter table listing the inputs of this algorithm.
  - createOutputParameters
```
public ParameterTable createOutputParameters()
```
    Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
    
    Specified by:
    
    createOutputParameters in interface ActionDiscovery
    
    Returns:
    
    A parameter table listing the outputs of this algorithm.
  - getOutputImageName
```
public java.lang.String getOutputImageName(java.lang.String imageParamName)
```
    Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
    
    Specified by:
    
    getOutputImageName in interface ActionDiscovery
    
    Parameters:
    
    imageParamName - The output image parameter label for which to get the image name.
    
    Returns:
    
    The image name of the requested output image parameter label.
  - isActionComplete
```
public boolean isActionComplete()
```
    Returns whether the action has successfully completed its execution.
    
    Specified by:
    
    isActionComplete in interface ActionDiscovery
    
    Returns:
    
    True, if the action is complete. False, if the action failed or is still running.

Class JDialogKernelRegression

Nested Class Summary

Nested classes/interfaces inherited from class gov.nih.mipav.view.dialogs.JDialogBase

Nested classes/interfaces inherited from class javax.swing.JDialog

Nested classes/interfaces inherited from class java.awt.Dialog

Nested classes/interfaces inherited from class java.awt.Window

Nested classes/interfaces inherited from class java.awt.Container

Nested classes/interfaces inherited from class java.awt.Component

Field Summary

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogScriptableBase

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogBase

Fields inherited from class javax.swing.JDialog

Fields inherited from class java.awt.Dialog

Fields inherited from class java.awt.Component

Fields inherited from interface java.awt.image.ImageObserver

Fields inherited from interface javax.swing.WindowConstants

Constructor Summary

Method Summary

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogScriptableBase

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogBase

Methods inherited from class javax.swing.JDialog

Methods inherited from class java.awt.Dialog

Methods inherited from class java.awt.Window

Methods inherited from class java.awt.Container

Methods inherited from class java.awt.Component

Methods inherited from class java.lang.Object

Methods inherited from interface gov.nih.mipav.view.dialogs.ActionDiscovery

Methods inherited from interface gov.nih.mipav.model.scripting.ScriptableActionInterface

Field Detail

kernelRegressionAlgo

destinationGroup

destinationPanel

displayLoc

image

image25D

image25DCheckBox

method

labelInitialGlobal

textInitialGlobal

initialGlobalSmoothing

labelIterativeGlobal

textIterativeGlobal

iterativeGlobalSmoothing

labelIterativeGlobal2

textIterativeGlobal2

iterativeGlobalSmoothing2

labelUpscale

textUpscale

upscale

labelInitialKernel

textInitialKernel

initialKernelSize

labelIterativeKernel

textIterativeKernel

iterativeKernelSize

labelIterations

textIterations

iterations

labelIterations2

textIterations2

iterations2

labelWindowSize

textWindowSize

windowSize

labelLambda

textLambda

lambda

labelAlpha

textAlpha

alpha

methodGroup

iterSteering2

iterIrregular

regSampled2Classic

steering2L1Norm

labelClassicStep

textClassicStep

classicStepSize

labelSteeringStep

textSteeringStep