java.lang.Object
- java.awt.Component
- - java.awt.Container
  - - java.awt.Window
    - - java.awt.Dialog
      - javax.swing.JDialog
        
        gov.nih.mipav.view.dialogs.JDialogBase
        
        gov.nih.mipav.view.dialogs.JDialogImageInfo

All Implemented Interfaces:

AlgorithmInterface, DialogDefaultsInterface, java.awt.event.ActionListener, java.awt.event.FocusListener, java.awt.event.ItemListener, java.awt.event.WindowListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, java.util.EventListener, javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants
```
public class JDialogImageInfo
extends JDialogBase
implements java.awt.event.ActionListener, AlgorithmInterface
```
The image attribute input dialog, which consists of six tabbled panes allowing the user to edit image name, resolutions, orientations, dataset origin, history, and transformation matrix.

Version:

0.1 Nov 23, 1999

Author:

Matthew J. McAuliffe, Ph.D.

See Also:

Serialized Form

Nested Class Summary
- Nested classes/interfaces inherited from class gov.nih.mipav.view.dialogs.JDialogBase
  JDialogBase.CancelAction, JDialogBase.HelpAction, JDialogBase.OKAction
- Nested classes/interfaces inherited from class javax.swing.JDialog
  javax.swing.JDialog.AccessibleJDialog
- Nested classes/interfaces inherited from class java.awt.Dialog
  java.awt.Dialog.AccessibleAWTDialog, java.awt.Dialog.ModalExclusionType, java.awt.Dialog.ModalityType
- Nested classes/interfaces inherited from class java.awt.Window
  java.awt.Window.AccessibleAWTWindow, java.awt.Window.Type
- Nested classes/interfaces inherited from class java.awt.Container
  java.awt.Container.AccessibleAWTContainer
- Nested classes/interfaces inherited from class java.awt.Component
  java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

Fields
Modifier and Type	Field	Description
`private javax.swing.JTextField[]`	`acpcACFields`	DOCUMENT ME!
`private javax.swing.JTextField[]`	`acpcDimFields`	DOCUMENT ME!
`private javax.swing.JTextField[]`	`acpcMaxFields`	DOCUMENT ME!
`private javax.swing.JTextField[]`	`acpcMinFields`	TLRC Specific info.
`private javax.swing.JTextField[]`	`acpcPCFields`	DOCUMENT ME!
`private javax.swing.JTextField`	`acpcResField`	DOCUMENT ME!
`private javax.swing.JButton`	`addReplaceMatrix`	Add as New/Replace button (depending on selected matrix type).
`private javax.swing.JButton`	`applyButton`	DOCUMENT ME!
`private javax.swing.JRadioButton`	`bigEnd`	Radio button to denote image is big endian.
`private javax.swing.JPanel`	`buttonPanel`	DOCUMENT ME!
`private AlgorithmChangeType`	`changeTypeAlgo`	DOCUMENT ME!!
`private javax.swing.JComboBox`	`comboBoxUnitOfMeasure1`	DOCUMENT ME!
`private javax.swing.JComboBox`	`comboBoxUnitOfMeasure3`	DOCUMENT ME!
`private javax.swing.JComboBox`	`comboBoxUnitOfMeasure4`	DOCUMENT ME!
`private javax.swing.JComboBox`	`comboBoxUnitOfMeasure5`	DOCUMENT ME!
`private int`	`DIM`	DOCUMENT ME!
`private boolean`	`endianess`	Indicates the endianess of the image.
`private TransMatrix`	`fileTransMatrix`	DOCUMENT ME!
`private java.awt.Font`	`font12B`	DOCUMENT ME!
`private ModelImage`	`image`	DOCUMENT ME!
`private javax.swing.JCheckBox`	`isTLRCBox`	DOCUMENT ME!
`private boolean`	`leftHandSystem`	If true change matrix to the left-hand coordinate system.
`private javax.swing.JButton`	`linkedImageButton`	DOCUMENT ME!
`private javax.swing.JTextField`	`linkedImageField`	DOCUMENT ME!
`private javax.swing.JRadioButton`	`littleEnd`	Radio button to denote image is little endian.
`private javax.swing.JButton`	`loadButton`	DOCUMENT ME!
`private double[][]`	`matrix`	DOCUMENT ME!
`private javax.swing.JComboBox`	`matrixBox`	Box to hold the matrices parsed from the MatrixHolder.
`private java.lang.String`	`matrixFile`	DOCUMENT ME!
`private int`	`measure1`	DOCUMENT ME!
`private int`	`measure3`	DOCUMENT ME!
`private int`	`measure4`	DOCUMENT ME!
`private int`	`measure5`	DOCUMENT ME!
`private int`	`modality`	DOCUMENT ME!
`private javax.swing.JComboBox`	`modalityBox`	DOCUMENT ME!
`private java.lang.String[]`	`modalityStr`	DOCUMENT ME!
`private javax.swing.JTextField`	`nameText`	DOCUMENT ME!
`private java.lang.String`	`newImageName`	DOCUMENT ME!
`private int`	`orient`	DOCUMENT ME!
`private javax.swing.JComboBox`	`orientationBox1`	DOCUMENT ME!
`private javax.swing.JComboBox`	`orientationBox2`	DOCUMENT ME!
`private javax.swing.JComboBox`	`orientationBox3`	DOCUMENT ME!
`private int[]`	`orientAxis`	DOCUMENT ME!
`private javax.swing.JComboBox`	`orientBox`	DOCUMENT ME!
`private javax.swing.JTextField[]`	`orientFields`	DOCUMENT ME!
`private javax.swing.JTextField[]`	`origACFields`	ACPC Specific info.
`private javax.swing.JTextField[]`	`origDimFields`	DOCUMENT ME!
`private float[]`	`origin`	DOCUMENT ME!
`private javax.swing.JTextField[]`	`origOriginFields`
`private javax.swing.JTextField[]`	`origPCFields`	DOCUMENT ME!
`private javax.swing.JTextField[]`	`origResFields`	DOCUMENT ME!
`private ModelImage`	`resampleImage`	DOCUMENT ME!
`private int`	`resIndex`	DOCUMENT ME!
`private boolean`	`resizeOnClose`
`private javax.swing.JCheckBox`	`resolutionBox`	DOCUMENT ME!
`private float[]`	`resolutions`	DOCUMENT ME!
`private javax.swing.JButton`	`saveButton`	DOCUMENT ME!
`private static long`	`serialVersionUID`	Use serialVersionUID for interoperability.
`private float`	`sliceThickness`	DOCUMENT ME!
`private javax.swing.JTabbedPane`	`tabbedPane`	DOCUMENT ME!
`private javax.swing.JTextField[][]`	`textMatrix`	DOCUMENT ME!
`private javax.swing.JTextField`	`textRes1`	DOCUMENT ME!
`private javax.swing.JTextField`	`textRes2`	DOCUMENT ME!
`private javax.swing.JTextField`	`textRes3`	DOCUMENT ME!
`private javax.swing.JTextField`	`textRes4`	DOCUMENT ME!
`private javax.swing.JTextField`	`textRes5`	DOCUMENT ME!
`private javax.swing.JTextField`	`textSliceThickness`	DOCUMENT ME!
`private javax.swing.JTextField`	`textSt1`	DOCUMENT ME!
`private javax.swing.JTextField`	`textSt2`	DOCUMENT ME!
`private javax.swing.JTextField`	`textSt3`	DOCUMENT ME!
`private javax.swing.JTextField`	`textSt4`	DOCUMENT ME!
`private java.lang.String[]`	`titles`	DOCUMENT ME!
`private javax.swing.JTextField[]`	`tlrcACFields`	DOCUMENT ME!
`private javax.swing.JTextField[]`	`tlrcDimFields`	DOCUMENT ME!
`private javax.swing.JTextField[]`	`tlrcPCFields`	DOCUMENT ME!
`private javax.swing.JTextField[]`	`tlrcResFields`	DOCUMENT ME!
`private javax.swing.JComboBox`	`transformIDBox`	DOCUMENT ME!
`private ViewUserInterface`	`userInterface`	DOCUMENT ME!
`private boolean`	`wcSystem`	If true change matrix to the world coordinate system.

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogBase
bar, cancelButton, cancelFlag, closeButton, HELP, helpButton, mainDialogPanel, NEW, OKButton, parentFrame, progressBar, REPLACE, runInSeparateThread, runningScriptFlag, runQuiet, serif12, serif12B, voiManager

Fields inherited from class javax.swing.JDialog
accessibleContext, rootPane, rootPaneCheckingEnabled

Fields inherited from class java.awt.Dialog
DEFAULT_MODALITY_TYPE

Fields inherited from class java.awt.Component
BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver
ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Fields inherited from interface javax.swing.WindowConstants
DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, EXIT_ON_CLOSE, HIDE_ON_CLOSE

Constructor Summary

Constructors
Constructor	Description
`JDialogImageInfo(java.awt.Frame theParentFrame, ModelImage im, int zSlice, int tSlice)`	Builds the image attribute input dialog, with three tabbled panes allowing the user to edit image name, orientation, resolutions, and transformation matrix.

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`actionPerformed(java.awt.event.ActionEvent event)`	When Apply button is pressed, applies changes to all three areas: image name, resolutions, and transformation matrix.
`void`	`algorithmPerformed(AlgorithmBase algorithm)`	DOCUMENT ME!
`private javax.swing.JPanel`	`buildComboBox()`	Builds the ComboBox panel editing units of measure.
`private javax.swing.JPanel`	`buildGeneralPanel()`	Builds the "edit image name" panel.
`private javax.swing.JPanel`	`buildMatrixPanel()`	Builds the panel usd in the tabbed pane "transform" as appropriate for the number of dimensions of the image.
`private javax.swing.JPanel`	`buildOrientPanel()`	Builds the "orientation edit" panel.
`private javax.swing.JPanel`	`buildResolutionPanel()`	Builds the panels which is edited in the tabbed pane "resolutions".
`private javax.swing.JPanel`	`buildStartLocationsPanel()`	Builds the panels which is edited in the tabbed pane "Dataset Origin".
`private javax.swing.JScrollPane`	`buildTalairachPanel()`	Builds the Talairach Transform scrollpane with all talairach related data.
`private void`	`init(java.lang.String addTitle)`	Initializes the dialog box and adds the components.
`protected static float[]`	`initResFactor(float[] imgResols, int[] imgUnits)`	Get the resolution correction needed for non-isotropic images.
`void`	`itemStateChanged(java.awt.event.ItemEvent e)`	DOCUMENT ME!
`java.lang.String`	`matrixFileMenu()`	Allows the user to select matrix file.
`void`	`populateTalairachTab()`	Looks at TalairachTransformInfo saved in ModelImage and populates the talairach scrollpane with the appropriate data.
`void`	`readTransformMatrixFile(java.lang.String fileName)`	Reads a matrix from a file.
`private TransMatrix`	`reorientCoordSystem(TransMatrix rkMatrix)`	Re-orient the matrix to world and left-hand coordinate systems if required.
`private void`	`setComboBox(javax.swing.JComboBox cBox)`	Sets combo box choices that match resolution units listed in FileInfoBase and in the same order.
`void`	`setLeftHandSystem(boolean leftHandSys)`	Sets the left-hand coordinate flag.
`void`	`setMatrix(TransMatrix newMatrix)`	update matrix and text matrix
`void`	`setResolutionTag()`	Set the resolution tag in front view.
`void`	`setSlice(int z, int t)`	Update the title bar and resolution information.
`private boolean`	`setVariables()`	Sets the variables appropriately from the GUI.
`void`	`setWCSystem(boolean wcSys)`	Sets the world coordinate flag.
`private void`	`updateEndianess()`	Updates the image endianess.
`private void`	`updateImageModality()`	Updates the image modality.
`private void`	`updateImageOrientation()`	Updates the image orientation.
`private void`	`updateMatrixBox(boolean refreshFields)`	Refreshes the matrix combo box with the list of available matrices within the image.
`private void`	`updateMatrixFields(TransMatrix newMatrix)`	Updates the matrix fields (transform ID, jtextfields).
`private void`	`updateMatrixInfo()`	Updates the image with the new Matrix information (for matrix replacement).
`private void`	`updateOriginInfo()`	Updates the origin.
`private void`	`updateResolInfo()`	Gives the image new resolutions.
`private void`	`updateTalairachInfo()`	updates the talairach transform info.
`private void`	`updateTransformInfo(TransMatrix tMat)`	Applies the values in the JTabbedPane "Transform" to the transform matrix in the image.
`private void`	`updateXMLLinkedFile()`	method to update the xml file infos with a new linked image path.

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogBase
buildApplyButton, buildButtons, buildCancelButton, buildCancelButton, buildCloseButton, buildHelpButton, buildImageComboBox, buildOKButton, buildOKButton, buildOKCancelButtons, buildTitledBorder, buildTitledBorder, createLabel, createProgressBar, createProgressBar, createTextField, focusGained, focusLost, getDialogName, isCancelled, isQuietRunning, isRunInSeparateThread, isScriptRunning, loadDefaults, loadDefaults, makeImageName, makeString, openNewFrame, saveDefaults, saveDefaults, setQuietRunning, setScriptRunning, setSeparateThread, setVisible, setVisible, setVisibleMenuBar, setVisibleStandard, setVOIManager, testParameter, testParameterMin, updateFFTFileInfo, updateFileInfo, updateFileInfoOtherModality, updateFileInfoStatic, updateFileInfoStatic, updateFileTypeInfo, updateFileTypeInfo, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class javax.swing.JDialog
addImpl, createRootPane, dialogInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update

Methods inherited from class java.awt.Dialog
addNotify, getModalityType, getTitle, hide, isModal, isResizable, isUndecorated, setBackground, setModal, setModalityType, setOpacity, setResizable, setShape, setTitle, setUndecorated, show, toBack

Methods inherited from class java.awt.Window
addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeNotify, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImage, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, toFront

Methods inherited from class java.awt.Container
add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component
action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setMixingCutoutShape, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

- Field Detail
  - serialVersionUID
```
private static final long serialVersionUID
```
    Use serialVersionUID for interoperability.
    
    See Also:
    
    Constant Field Values
  - acpcACFields
```
private javax.swing.JTextField[] acpcACFields
```
    DOCUMENT ME!
  - acpcDimFields
```
private javax.swing.JTextField[] acpcDimFields
```
    DOCUMENT ME!
  - acpcMaxFields
```
private javax.swing.JTextField[] acpcMaxFields
```
    DOCUMENT ME!
  - acpcMinFields
```
private javax.swing.JTextField[] acpcMinFields
```
    TLRC Specific info.
  - acpcPCFields
```
private javax.swing.JTextField[] acpcPCFields
```
    DOCUMENT ME!
  - acpcResField
```
private javax.swing.JTextField acpcResField
```
    DOCUMENT ME!
  - addReplaceMatrix
```
private javax.swing.JButton addReplaceMatrix
```
    Add as New/Replace button (depending on selected matrix type).
  - applyButton
```
private javax.swing.JButton applyButton
```
    DOCUMENT ME!
  - bigEnd
```
private javax.swing.JRadioButton bigEnd
```
    Radio button to denote image is big endian.
  - buttonPanel
```
private javax.swing.JPanel buttonPanel
```
    DOCUMENT ME!
  - changeTypeAlgo
```
private AlgorithmChangeType changeTypeAlgo
```
    DOCUMENT ME!!
  - comboBoxUnitOfMeasure1
```
private javax.swing.JComboBox comboBoxUnitOfMeasure1
```
    DOCUMENT ME!
  - comboBoxUnitOfMeasure3
```
private javax.swing.JComboBox comboBoxUnitOfMeasure3
```
    DOCUMENT ME!
  - comboBoxUnitOfMeasure4
```
private javax.swing.JComboBox comboBoxUnitOfMeasure4
```
    DOCUMENT ME!
  - comboBoxUnitOfMeasure5
```
private javax.swing.JComboBox comboBoxUnitOfMeasure5
```
    DOCUMENT ME!
  - DIM
```
private int DIM
```
    DOCUMENT ME!
  - endianess
```
private boolean endianess
```
    Indicates the endianess of the image.
  - fileTransMatrix
```
private TransMatrix fileTransMatrix
```
    DOCUMENT ME!
  - font12B
```
private final java.awt.Font font12B
```
    DOCUMENT ME!
  - image
```
private final ModelImage image
```
    DOCUMENT ME!
  - isTLRCBox
```
private javax.swing.JCheckBox isTLRCBox
```
    DOCUMENT ME!
  - leftHandSystem
```
private boolean leftHandSystem
```
    If true change matrix to the left-hand coordinate system.
  - linkedImageButton
```
private javax.swing.JButton linkedImageButton
```
    DOCUMENT ME!
  - linkedImageField
```
private javax.swing.JTextField linkedImageField
```
    DOCUMENT ME!
  - littleEnd
```
private javax.swing.JRadioButton littleEnd
```
    Radio button to denote image is little endian.
  - loadButton
```
private javax.swing.JButton loadButton
```
    DOCUMENT ME!
  - matrix
```
private double[][] matrix
```
    DOCUMENT ME!
  - matrixBox
```
private javax.swing.JComboBox matrixBox
```
    Box to hold the matrices parsed from the MatrixHolder.
  - matrixFile
```
private java.lang.String matrixFile
```
    DOCUMENT ME!
  - measure1
```
private int measure1
```
    DOCUMENT ME!
  - measure3
```
private int measure3
```
    DOCUMENT ME!
  - measure4
```
private int measure4
```
    DOCUMENT ME!
  - measure5
```
private int measure5
```
    DOCUMENT ME!
  - modality
```
private int modality
```
    DOCUMENT ME!
  - modalityBox
```
private javax.swing.JComboBox modalityBox
```
    DOCUMENT ME!
  - modalityStr
```
private java.lang.String[] modalityStr
```
    DOCUMENT ME!
  - nameText
```
private javax.swing.JTextField nameText
```
    DOCUMENT ME!
  - newImageName
```
private java.lang.String newImageName
```
    DOCUMENT ME!
  - orient
```
private int orient
```
    DOCUMENT ME!
  - orientationBox1
```
private javax.swing.JComboBox orientationBox1
```
    DOCUMENT ME!
  - orientationBox2
```
private javax.swing.JComboBox orientationBox2
```
    DOCUMENT ME!
  - orientationBox3
```
private javax.swing.JComboBox orientationBox3
```
    DOCUMENT ME!
  - orientAxis
```
private final int[] orientAxis
```
    DOCUMENT ME!
  - orientBox
```
private javax.swing.JComboBox orientBox
```
    DOCUMENT ME!
  - orientFields
```
private javax.swing.JTextField[] orientFields
```
    DOCUMENT ME!
  - origACFields
```
private javax.swing.JTextField[] origACFields
```
    ACPC Specific info.
  - origDimFields
```
private javax.swing.JTextField[] origDimFields
```
    DOCUMENT ME!
  - origOriginFields
```
private javax.swing.JTextField[] origOriginFields
```
  - origin
```
private float[] origin
```
    DOCUMENT ME!
  - origPCFields
```
private javax.swing.JTextField[] origPCFields
```
    DOCUMENT ME!
  - origResFields
```
private javax.swing.JTextField[] origResFields
```
    DOCUMENT ME!
  - resampleImage
```
private final ModelImage resampleImage
```
    DOCUMENT ME!
  - resIndex
```
private int resIndex
```
    DOCUMENT ME!
  - resolutionBox
```
private javax.swing.JCheckBox resolutionBox
```
    DOCUMENT ME!
  - resolutions
```
private float[] resolutions
```
    DOCUMENT ME!
  - saveButton
```
private javax.swing.JButton saveButton
```
    DOCUMENT ME!
  - sliceThickness
```
private float sliceThickness
```
    DOCUMENT ME!
  - tabbedPane
```
private javax.swing.JTabbedPane tabbedPane
```
    DOCUMENT ME!
  - textMatrix
```
private javax.swing.JTextField[][] textMatrix
```
    DOCUMENT ME!
  - textRes1
```
private javax.swing.JTextField textRes1
```
    DOCUMENT ME!
  - textRes2
```
private javax.swing.JTextField textRes2
```
    DOCUMENT ME!
  - textRes3
```
private javax.swing.JTextField textRes3
```
    DOCUMENT ME!
  - textRes4
```
private javax.swing.JTextField textRes4
```
    DOCUMENT ME!
  - textRes5
```
private javax.swing.JTextField textRes5
```
    DOCUMENT ME!
  - textSt1
```
private javax.swing.JTextField textSt1
```
    DOCUMENT ME!
  - textSt2
```
private javax.swing.JTextField textSt2
```
    DOCUMENT ME!
  - textSt3
```
private javax.swing.JTextField textSt3
```
    DOCUMENT ME!
  - textSt4
```
private javax.swing.JTextField textSt4
```
    DOCUMENT ME!
  - textSliceThickness
```
private javax.swing.JTextField textSliceThickness
```
    DOCUMENT ME!
  - titles
```
private java.lang.String[] titles
```
    DOCUMENT ME!
  - tlrcACFields
```
private javax.swing.JTextField[] tlrcACFields
```
    DOCUMENT ME!
  - tlrcDimFields
```
private javax.swing.JTextField[] tlrcDimFields
```
    DOCUMENT ME!
  - tlrcPCFields
```
private javax.swing.JTextField[] tlrcPCFields
```
    DOCUMENT ME!
  - tlrcResFields
```
private javax.swing.JTextField[] tlrcResFields
```
    DOCUMENT ME!
  - transformIDBox
```
private javax.swing.JComboBox transformIDBox
```
    DOCUMENT ME!
  - userInterface
```
private final ViewUserInterface userInterface
```
    DOCUMENT ME!
  - wcSystem
```
private boolean wcSystem
```
    If true change matrix to the world coordinate system.
  - resizeOnClose
```
private boolean resizeOnClose
```
- Constructor Detail
  - JDialogImageInfo
```
public JDialogImageInfo(java.awt.Frame theParentFrame,
                        ModelImage im,
                        int zSlice,
                        int tSlice)
```
    Builds the image attribute input dialog, with three tabbled panes allowing the user to edit image name, orientation, resolutions, and transformation matrix.
    
    Parameters:
    
    theParentFrame - Parent frame of dialog.
    
    im - Image whose attributes the user is editing.
    
    zSlice - DOCUMENT ME!
    
    tSlice - DOCUMENT ME!
- Method Detail
  - actionPerformed
```
public void actionPerformed(java.awt.event.ActionEvent event)
```
    When Apply button is pressed, applies changes to all three areas: image name, resolutions, and transformation matrix. When OK button is pressed, applies changes and closes dialog box. When Cancel button is pressed, closes dialog without making any additional changes.
    
    Specified by:
    
    actionPerformed in interface java.awt.event.ActionListener
    
    Overrides:
    
    actionPerformed in class JDialogBase
    
    Parameters:
    
    event - Event that triggers this function.
  - algorithmPerformed
```
public void algorithmPerformed(AlgorithmBase algorithm)
```
    DOCUMENT ME!
    
    Specified by:
    
    algorithmPerformed in interface AlgorithmInterface
    
    Parameters:
    
    algorithm - DOCUMENT ME!
  - itemStateChanged
```
public void itemStateChanged(java.awt.event.ItemEvent e)
```
    DOCUMENT ME!
    
    Specified by:
    
    itemStateChanged in interface java.awt.event.ItemListener
    
    Overrides:
    
    itemStateChanged in class JDialogBase
    
    Parameters:
    
    e - DOCUMENT ME!
  - matrixFileMenu
```
public java.lang.String matrixFileMenu()
```
    Allows the user to select matrix file.
    
    Returns:
    
    fileName
  - populateTalairachTab
```
public void populateTalairachTab()
```
    Looks at TalairachTransformInfo saved in ModelImage and populates the talairach scrollpane with the appropriate data.
  - readTransformMatrixFile
```
public void readTransformMatrixFile(java.lang.String fileName)
```
    Reads a matrix from a file.
    
    Parameters:
    
    fileName - name of the matrix file.
  - setLeftHandSystem
```
public void setLeftHandSystem(boolean leftHandSys)
```
    Sets the left-hand coordinate flag. If true, change matrix to the left-hand coordinate system.
    
    Overrides:
    
    setLeftHandSystem in class JDialogBase
    
    Parameters:
    
    leftHandSys - true for left-handed
  - setMatrix
```
public void setMatrix(TransMatrix newMatrix)
```
    update matrix and text matrix
    
    Parameters:
    
    newMatrix - matrix to copy
  - setResolutionTag
```
public void setResolutionTag()
```
    Set the resolution tag in front view.
  - setSlice
```
public void setSlice(int z,
                     int t)
```
    Update the title bar and resolution information.
    
    Parameters:
    
    z - int z-dim
    
    t - int t-dim
  - setWCSystem
```
public void setWCSystem(boolean wcSys)
```
    Sets the world coordinate flag. If true, change matrix to the world coordinate system.
    
    Overrides:
    
    setWCSystem in class JDialogBase
    
    Parameters:
    
    wcSys - DOCUMENT ME!
  - buildComboBox
```
private javax.swing.JPanel buildComboBox()
```
    Builds the ComboBox panel editing units of measure.
    
    Returns:
    
    The combo box panel.
  - buildGeneralPanel
```
private javax.swing.JPanel buildGeneralPanel()
```
    Builds the "edit image name" panel.
    
    Returns:
    
    The panel on which the user can edit the name of the image.
  - buildMatrixPanel
```
private javax.swing.JPanel buildMatrixPanel()
```
    Builds the panel usd in the tabbed pane "transform" as appropriate for the number of dimensions of the image.
    
    Returns:
    
    The newly created matrix panel.
  - buildOrientPanel
```
private javax.swing.JPanel buildOrientPanel()
```
    Builds the "orientation edit" panel.
    
    Returns:
    
    The panel on which the user can edit the name of the image.
  - buildResolutionPanel
```
private javax.swing.JPanel buildResolutionPanel()
```
    Builds the panels which is edited in the tabbed pane "resolutions".
    
    Returns:
    
    The resolutions panel.
  - buildStartLocationsPanel
```
private javax.swing.JPanel buildStartLocationsPanel()
```
    Builds the panels which is edited in the tabbed pane "Dataset Origin".
    
    Returns:
    
    The Dataset Origin panel.
  - buildTalairachPanel
```
private javax.swing.JScrollPane buildTalairachPanel()
```
    Builds the Talairach Transform scrollpane with all talairach related data.
    
    Returns:
    
    JScrollPane talairach scrollpane
  - init
```
private void init(java.lang.String addTitle)
```
    Initializes the dialog box and adds the components.
    
    Parameters:
    
    addTitle - DOCUMENT ME!
  - reorientCoordSystem
```
private TransMatrix reorientCoordSystem(TransMatrix rkMatrix)
```
    Re-orient the matrix to world and left-hand coordinate systems if required.
    
    Parameters:
    
    rkMatrix - the matrix to be converted
    
    Returns:
    
    result
    
    See Also:
    
    reorientCoordSystem(gov.nih.mipav.model.structures.TransMatrix)
  - setComboBox
```
private void setComboBox(javax.swing.JComboBox cBox)
```
    Sets combo box choices that match resolution units listed in FileInfoBase and in the same order.
    
    Parameters:
    
    cBox - Combo box to setup to display the units.
  - setVariables
```
private boolean setVariables()
```
    Sets the variables appropriately from the GUI.
    
    Returns:
    
    Flag indicating successful set.
  - updateEndianess
```
private void updateEndianess()
```
    Updates the image endianess.
  - updateImageModality
```
private void updateImageModality()
```
    Updates the image modality.
  - updateImageOrientation
```
private void updateImageOrientation()
```
    Updates the image orientation.
  - updateMatrixBox
```
private void updateMatrixBox(boolean refreshFields)
```
    Refreshes the matrix combo box with the list of available matrices within the image.
    
    Parameters:
    
    refreshFields - whether or not to refresh the matrix fields (not done in init() bc of order of operations)
  - updateMatrixFields
```
private void updateMatrixFields(TransMatrix newMatrix)
```
    Updates the matrix fields (transform ID, jtextfields).
    
    Parameters:
    
    newMatrix - new matrix to use in the update
  - updateMatrixInfo
```
private void updateMatrixInfo()
```
    Updates the image with the new Matrix information (for matrix replacement).
  - updateOriginInfo
```
private void updateOriginInfo()
```
    Updates the origin. Each image has a fileinfo where the origin are stored. Note that the start location for the Z (3rd) dimension change with the change is the slice. The origin is in the upper left corner and we are using the right hand rule. + x -> left to right; + y -> top to bottom and + z -> into screen.
  - updateResolInfo
```
private void updateResolInfo()
```
    Gives the image new resolutions.
  - initResFactor
```
protected static float[] initResFactor(float[] imgResols,
                                       int[] imgUnits)
```
    Get the resolution correction needed for non-isotropic images.
    
    Parameters:
    
    imgResols - the image resolution
    
    imgUnits - the image units of measure
    
    Returns:
    
    the resolution correction factor in the x (the first element) and y (the second element) dimensions
  - updateTalairachInfo
```
private void updateTalairachInfo()
```
    updates the talairach transform info.
  - updateTransformInfo
```
private void updateTransformInfo(TransMatrix tMat)
```
    Applies the values in the JTabbedPane "Transform" to the transform matrix in the image. Note that there are no visual changes made to the image itself.
    
    Parameters:
    
    tMat - DOCUMENT ME!
  - updateXMLLinkedFile
```
private void updateXMLLinkedFile()
```
    method to update the xml file infos with a new linked image path.

Class JDialogImageInfo

Nested Class Summary

Nested classes/interfaces inherited from class gov.nih.mipav.view.dialogs.JDialogBase

Nested classes/interfaces inherited from class javax.swing.JDialog

Nested classes/interfaces inherited from class java.awt.Dialog

Nested classes/interfaces inherited from class java.awt.Window

Nested classes/interfaces inherited from class java.awt.Container

Nested classes/interfaces inherited from class java.awt.Component

Field Summary

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogBase

Fields inherited from class javax.swing.JDialog

Fields inherited from class java.awt.Dialog

Fields inherited from class java.awt.Component

Fields inherited from interface java.awt.image.ImageObserver

Fields inherited from interface javax.swing.WindowConstants

Constructor Summary

Method Summary

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogBase

Methods inherited from class javax.swing.JDialog

Methods inherited from class java.awt.Dialog

Methods inherited from class java.awt.Window

Methods inherited from class java.awt.Container

Methods inherited from class java.awt.Component

Methods inherited from class java.lang.Object

Field Detail

serialVersionUID

acpcACFields

acpcDimFields

acpcMaxFields

acpcMinFields

acpcPCFields

acpcResField

addReplaceMatrix

applyButton

bigEnd

buttonPanel

changeTypeAlgo

comboBoxUnitOfMeasure1

comboBoxUnitOfMeasure3

comboBoxUnitOfMeasure4

comboBoxUnitOfMeasure5

DIM

endianess

fileTransMatrix

font12B

image

isTLRCBox

leftHandSystem

linkedImageButton

linkedImageField

littleEnd

loadButton

matrix

matrixBox

matrixFile

measure1

measure3

measure4

measure5

modality

modalityBox

modalityStr

nameText

newImageName

orient

orientationBox1

orientationBox2

orientationBox3

orientAxis

orientBox

orientFields

origACFields

origDimFields

origOriginFields

origin

origPCFields

origResFields

resampleImage

resIndex

resolutionBox