java.lang.Object
- java.awt.Component
- - java.awt.Container
  - - java.awt.Window
    - - java.awt.Dialog
      - javax.swing.JDialog
        
        gov.nih.mipav.view.dialogs.JDialogBase
        
        gov.nih.mipav.view.dialogs.JDialogScriptableBase
        
        gov.nih.mipav.view.dialogs.JDialogEmbeddedConfidenceEdgeDetection

All Implemented Interfaces:

AlgorithmInterface, ScriptableActionInterface, DialogDefaultsInterface, java.awt.event.ActionListener, java.awt.event.FocusListener, java.awt.event.ItemListener, java.awt.event.WindowListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, java.util.EventListener, javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants
```
public class JDialogEmbeddedConfidenceEdgeDetection
extends JDialogScriptableBase
implements AlgorithmInterface
```
See Also:

Serialized Form

Nested Class Summary
- Nested classes/interfaces inherited from class gov.nih.mipav.view.dialogs.JDialogBase
  JDialogBase.CancelAction, JDialogBase.HelpAction, JDialogBase.OKAction
- Nested classes/interfaces inherited from class javax.swing.JDialog
  javax.swing.JDialog.AccessibleJDialog
- Nested classes/interfaces inherited from class java.awt.Dialog
  java.awt.Dialog.AccessibleAWTDialog, java.awt.Dialog.ModalExclusionType, java.awt.Dialog.ModalityType
- Nested classes/interfaces inherited from class java.awt.Window
  java.awt.Window.AccessibleAWTWindow, java.awt.Window.Type
- Nested classes/interfaces inherited from class java.awt.Container
  java.awt.Container.AccessibleAWTContainer
- Nested classes/interfaces inherited from class java.awt.Component
  java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

Fields
Modifier and Type	Field	Description
`private double`	`ch`
`private double`	`cl`
`private javax.swing.JComboBox`	`comboBoxHigh`
`private javax.swing.JComboBox`	`comboBoxLow`
`private javax.swing.JComboBox`	`comboBoxSuppression`
`private static double`	`CONF_H`
`private static double`	`CONF_L`
`private static double`	`CONF_NMX`
`private int`	`displayLoc`
`private AlgorithmEmbeddedConfidenceEdgeDetection`	`edgeDetectionAlgo`
`private static int`	`FC_ELLIPSE`
`private static int`	`FC_HORIZ_LINE`
`private static int`	`FC_LINE`
`private static int`	`FC_SQUARE_BOX`
`private static int`	`FC_VERT_LINE`
`private javax.swing.JTextField`	`hysteresisHighConfidenceText`
`private javax.swing.JTextField`	`hysteresisHighRankText`
`private javax.swing.JTextField`	`hysteresisLowConfidenceText`
`private javax.swing.JTextField`	`hysteresisLowRankText`
`private int`	`hystTypeHigh`
`private int`	`hystTypeLow`
`private ModelImage`	`image`
`private static int`	`KERNEL_SIZE`
`private int`	`kernelSize`
`private javax.swing.JRadioButton`	`newImage`
`private int`	`nMin`
`private static int`	`NMIN`
`private javax.swing.JTextField`	`nMinText`
`private double`	`nmxc`
`private double`	`nmxr`
`private int`	`nmxType`
`private static double`	`RANK_H`
`private static double`	`RANK_L`
`private static double`	`RANK_NMX`
`private javax.swing.JRadioButton`	`replaceImage`
`private ModelImage`	`resultImage`
`private double`	`rh`
`private double`	`rl`
`private javax.swing.JTextField`	`suppressionConfidenceText`
`private javax.swing.JTextField`	`suppressionRankText`
`private java.lang.String[]`	`titles`
`private ViewUserInterface`	`userInterface`
`private javax.swing.JTextField`	`windowSizeText`

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogScriptableBase
displayInNewFrame, isComplete, scriptParameters

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogBase
applyButton, bar, cancelButton, cancelFlag, closeButton, HELP, helpButton, mainDialogPanel, NEW, OKButton, parentFrame, progressBar, REPLACE, runInSeparateThread, runningScriptFlag, runQuiet, serif12, serif12B, voiManager

Fields inherited from class javax.swing.JDialog
accessibleContext, rootPane, rootPaneCheckingEnabled

Fields inherited from class java.awt.Dialog
DEFAULT_MODALITY_TYPE

Fields inherited from class java.awt.Component
BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver
ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Fields inherited from interface javax.swing.WindowConstants
DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, EXIT_ON_CLOSE, HIDE_ON_CLOSE

Constructor Summary

Constructors
Constructor	Description
`JDialogEmbeddedConfidenceEdgeDetection()`	Empty constructor needed for dynamic instantiation (used during scripting).
`JDialogEmbeddedConfidenceEdgeDetection(java.awt.Frame theParentFrame, ModelImage im)`	Creates new dialog for entering parameters for embedded confidence edge detection.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`actionPerformed(java.awt.event.ActionEvent event)`	actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
`void`	`algorithmPerformed(AlgorithmBase algorithm)`	This method is required if the AlgorithmPerformed interface is implemented.
`protected void`	`callAlgorithm()`	Once all the necessary variables are set, call the Mean Shift Segmentation algorithm based on what type of image this is and whether or not there is a separate destination image.
`private void`	`init()`	Sets up the GUI (panels, buttons, etc) and displays it on the screen.
`void`	`setDisplayLocNew()`	Accessor that sets the display loc variable to new, so that a new image is created once the algorithm completes.
`void`	`setDisplayLocReplace()`	Accessor that sets the display loc variable to replace, so the current image is replaced once the algorithm completes.
`protected void`	`setGUIFromParams()`	Set the dialog GUI using the script parameters while running this algorithm as part of a script.
`private boolean`	`setVariables()`	Use the GUI results to set up the variables needed to run the algorithm.
`protected void`	`storeParamsFromGUI()`	Record the parameters just used to run this algorithm in a script.

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogScriptableBase
doPostAlgorithmActions, getDialogActionString, insertScriptLine, isComplete, scriptRun, setComplete

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogBase
buildApplyButton, buildButtons, buildCancelButton, buildCancelButton, buildCloseButton, buildHelpButton, buildImageComboBox, buildOKButton, buildOKButton, buildOKCancelButtons, buildTitledBorder, buildTitledBorder, createLabel, createProgressBar, createProgressBar, createTextField, focusGained, focusLost, getDialogName, isCancelled, isQuietRunning, isRunInSeparateThread, isScriptRunning, itemStateChanged, loadDefaults, loadDefaults, makeImageName, makeString, openNewFrame, saveDefaults, saveDefaults, setLeftHandSystem, setQuietRunning, setScriptRunning, setSeparateThread, setVisible, setVisible, setVisibleMenuBar, setVisibleStandard, setVOIManager, setWCSystem, testParameter, testParameterMin, updateFFTFileInfo, updateFileInfo, updateFileInfoOtherModality, updateFileInfoStatic, updateFileInfoStatic, updateFileTypeInfo, updateFileTypeInfo, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class javax.swing.JDialog
addImpl, createRootPane, dialogInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update

Methods inherited from class java.awt.Dialog
addNotify, getModalityType, getTitle, hide, isModal, isResizable, isUndecorated, setBackground, setModal, setModalityType, setOpacity, setResizable, setShape, setTitle, setUndecorated, show, toBack

Methods inherited from class java.awt.Window
addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeNotify, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImage, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, toFront

Methods inherited from class java.awt.Container
add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component
action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setMixingCutoutShape, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

- Field Detail
  - CONF_NMX
```
private static final double CONF_NMX
```
    See Also:
    
    Constant Field Values
  - RANK_NMX
```
private static final double RANK_NMX
```
    See Also:
    
    Constant Field Values
  - CONF_H
```
private static final double CONF_H
```
    See Also:
    
    Constant Field Values
  - RANK_H
```
private static final double RANK_H
```
    See Also:
    
    Constant Field Values
  - CONF_L
```
private static final double CONF_L
```
    See Also:
    
    Constant Field Values
  - RANK_L
```
private static final double RANK_L
```
    See Also:
    
    Constant Field Values
  - NMIN
```
private static final int NMIN
```
    See Also:
    
    Constant Field Values
  - KERNEL_SIZE
```
private static final int KERNEL_SIZE
```
    See Also:
    
    Constant Field Values
  - FC_ELLIPSE
```
private static final int FC_ELLIPSE
```
    See Also:
    
    Constant Field Values
  - FC_VERT_LINE
```
private static final int FC_VERT_LINE
```
    See Also:
    
    Constant Field Values
  - FC_HORIZ_LINE
```
private static final int FC_HORIZ_LINE
```
    See Also:
    
    Constant Field Values
  - FC_LINE
```
private static final int FC_LINE
```
    See Also:
    
    Constant Field Values
  - FC_SQUARE_BOX
```
private static final int FC_SQUARE_BOX
```
    See Also:
    
    Constant Field Values
  - displayLoc
```
private int displayLoc
```
  - image
```
private ModelImage image
```
  - userInterface
```
private ViewUserInterface userInterface
```
  - edgeDetectionAlgo
```
private AlgorithmEmbeddedConfidenceEdgeDetection edgeDetectionAlgo
```
  - resultImage
```
private ModelImage resultImage
```
  - titles
```
private java.lang.String[] titles
```
  - newImage
```
private javax.swing.JRadioButton newImage
```
  - replaceImage
```
private javax.swing.JRadioButton replaceImage
```
  - kernelSize
```
private int kernelSize
```
  - nmxr
```
private double nmxr
```
  - nmxc
```
private double nmxc
```
  - rh
```
private double rh
```
  - ch
```
private double ch
```
  - rl
```
private double rl
```
  - cl
```
private double cl
```
  - nMin
```
private int nMin
```
  - nmxType
```
private int nmxType
```
  - hystTypeHigh
```
private int hystTypeHigh
```
  - hystTypeLow
```
private int hystTypeLow
```
  - windowSizeText
```
private javax.swing.JTextField windowSizeText
```
  - suppressionRankText
```
private javax.swing.JTextField suppressionRankText
```
  - suppressionConfidenceText
```
private javax.swing.JTextField suppressionConfidenceText
```
  - hysteresisHighRankText
```
private javax.swing.JTextField hysteresisHighRankText
```
  - hysteresisHighConfidenceText
```
private javax.swing.JTextField hysteresisHighConfidenceText
```
  - hysteresisLowRankText
```
private javax.swing.JTextField hysteresisLowRankText
```
  - hysteresisLowConfidenceText
```
private javax.swing.JTextField hysteresisLowConfidenceText
```
  - nMinText
```
private javax.swing.JTextField nMinText
```
  - comboBoxSuppression
```
private javax.swing.JComboBox comboBoxSuppression
```
  - comboBoxHigh
```
private javax.swing.JComboBox comboBoxHigh
```
  - comboBoxLow
```
private javax.swing.JComboBox comboBoxLow
```
- Constructor Detail
  - JDialogEmbeddedConfidenceEdgeDetection
```
public JDialogEmbeddedConfidenceEdgeDetection()
```
    Empty constructor needed for dynamic instantiation (used during scripting).
  - JDialogEmbeddedConfidenceEdgeDetection
```
public JDialogEmbeddedConfidenceEdgeDetection(java.awt.Frame theParentFrame,
                                              ModelImage im)
```
    Creates new dialog for entering parameters for embedded confidence edge detection.
    
    Parameters:
    
    theParentFrame - Parent frame
    
    im - Source image
- Method Detail
  - init
```
private void init()
```
    Sets up the GUI (panels, buttons, etc) and displays it on the screen.
  - actionPerformed
```
public void actionPerformed(java.awt.event.ActionEvent event)
```
    actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
    
    Specified by:
    
    actionPerformed in interface java.awt.event.ActionListener
    
    Overrides:
    
    actionPerformed in class JDialogBase
    
    Parameters:
    
    event - event that triggers function
  - setVariables
```
private boolean setVariables()
```
    Use the GUI results to set up the variables needed to run the algorithm.
    
    Returns:
    
    true if parameters set successfully, false otherwise.
  - algorithmPerformed
```
public void algorithmPerformed(AlgorithmBase algorithm)
```
    This method is required if the AlgorithmPerformed interface is implemented. It is called by the algorithms when it has completed or failed to to complete, so that the dialog can be display the result image and/or clean up.
    
    Specified by:
    
    algorithmPerformed in interface AlgorithmInterface
    
    Parameters:
    
    algorithm - Algorithm that caused the event.
  - callAlgorithm
```
protected void callAlgorithm()
```
    Once all the necessary variables are set, call the Mean Shift Segmentation algorithm based on what type of image this is and whether or not there is a separate destination image.
    
    Specified by:
    
    callAlgorithm in class JDialogScriptableBase
  - setDisplayLocNew
```
public void setDisplayLocNew()
```
    Accessor that sets the display loc variable to new, so that a new image is created once the algorithm completes.
  - setDisplayLocReplace
```
public void setDisplayLocReplace()
```
    Accessor that sets the display loc variable to replace, so the current image is replaced once the algorithm completes.
  - setGUIFromParams
```
protected void setGUIFromParams()
```
    Set the dialog GUI using the script parameters while running this algorithm as part of a script.
    
    Specified by:
    
    setGUIFromParams in class JDialogScriptableBase
  - storeParamsFromGUI
```
protected void storeParamsFromGUI()
                           throws ParserException
```
    Record the parameters just used to run this algorithm in a script.
    
    Specified by:
    
    storeParamsFromGUI in class JDialogScriptableBase
    
    Throws:
    
    ParserException - If there is a problem creating/recording the new parameters.

Class JDialogEmbeddedConfidenceEdgeDetection

Nested Class Summary

Nested classes/interfaces inherited from class gov.nih.mipav.view.dialogs.JDialogBase

Nested classes/interfaces inherited from class javax.swing.JDialog

Nested classes/interfaces inherited from class java.awt.Dialog

Nested classes/interfaces inherited from class java.awt.Window

Nested classes/interfaces inherited from class java.awt.Container

Nested classes/interfaces inherited from class java.awt.Component

Field Summary

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogScriptableBase

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogBase

Fields inherited from class javax.swing.JDialog

Fields inherited from class java.awt.Dialog

Fields inherited from class java.awt.Component

Fields inherited from interface java.awt.image.ImageObserver

Fields inherited from interface javax.swing.WindowConstants

Constructor Summary

Method Summary

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogScriptableBase

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogBase

Methods inherited from class javax.swing.JDialog

Methods inherited from class java.awt.Dialog

Methods inherited from class java.awt.Window

Methods inherited from class java.awt.Container

Methods inherited from class java.awt.Component

Methods inherited from class java.lang.Object

Field Detail

CONF_NMX

RANK_NMX

CONF_H

RANK_H

CONF_L

RANK_L

NMIN

KERNEL_SIZE

FC_ELLIPSE

FC_VERT_LINE

FC_HORIZ_LINE

FC_LINE

FC_SQUARE_BOX

displayLoc

image

userInterface

edgeDetectionAlgo

resultImage

titles

newImage

replaceImage

kernelSize

nmxr

nmxc

rh

ch

rl

cl

nMin

nmxType

hystTypeHigh

hystTypeLow

windowSizeText

suppressionRankText

suppressionConfidenceText

hysteresisHighRankText

hysteresisHighConfidenceText

hysteresisLowRankText

hysteresisLowConfidenceText

nMinText

comboBoxSuppression

comboBoxHigh

comboBoxLow

Constructor Detail

JDialogEmbeddedConfidenceEdgeDetection

JDialogEmbeddedConfidenceEdgeDetection

Method Detail

init

actionPerformed

setVariables

algorithmPerformed

callAlgorithm

setDisplayLocNew