java.lang.Object
- java.awt.Component
- - java.awt.Container
  - - java.awt.Window
    - - java.awt.Dialog
      - javax.swing.JDialog
        
        gov.nih.mipav.view.dialogs.JDialogBase
        
        gov.nih.mipav.view.dialogs.JDialogAGVF

All Implemented Interfaces:

AlgorithmInterface, DialogDefaultsInterface, java.awt.event.ActionListener, java.awt.event.FocusListener, java.awt.event.ItemListener, java.awt.event.WindowListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, java.util.EventListener, javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants
```
public class JDialogAGVF
extends JDialogBase
implements AlgorithmInterface, java.awt.event.ItemListener
```
Dialog to get user input, then call the snake-like algorithm.

See Also:

AlgorithmAGVF, Serialized Form

Nested Class Summary
- Nested classes/interfaces inherited from class gov.nih.mipav.view.dialogs.JDialogBase
  JDialogBase.CancelAction, JDialogBase.HelpAction, JDialogBase.OKAction
- Nested classes/interfaces inherited from class javax.swing.JDialog
  javax.swing.JDialog.AccessibleJDialog
- Nested classes/interfaces inherited from class java.awt.Dialog
  java.awt.Dialog.AccessibleAWTDialog, java.awt.Dialog.ModalExclusionType, java.awt.Dialog.ModalityType
- Nested classes/interfaces inherited from class java.awt.Window
  java.awt.Window.AccessibleAWTWindow, java.awt.Window.Type
- Nested classes/interfaces inherited from class java.awt.Container
  java.awt.Container.AccessibleAWTContainer
- Nested classes/interfaces inherited from class java.awt.Component
  java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

Fields
Modifier and Type	Field	Description
`private AlgorithmAGVF`	`agvfAlgo`	DOCUMENT ME!
`private int`	`boundaryIterations`	DOCUMENT ME!
`private javax.swing.JCheckBox`	`checkboxDisplay`	DOCUMENT ME!
`private float`	`dilation`	default dilation:.
`private boolean`	`do25D`	DOCUMENT ME!
`private javax.swing.JCheckBox`	`do25DCheckBox`	DOCUMENT ME!
`private boolean`	`doCellTracking`	When true, do a Cell-tracking version of Active GVF Contours:.
`private javax.swing.JCheckBox`	`doCellTrackingCheckBox`	Checkbox to turn cell-tracking on/off:.
`private boolean`	`doDilate`	When true, dilate the cell radius before finding the next contour:.
`private javax.swing.JCheckBox`	`doDilateCheckBox`	Checkbox to turn cell-tracking on/off:.
`private int`	`groupNum`	DOCUMENT ME!
`private int`	`gvfIterations`	DOCUMENT ME!
`private ModelImage`	`image`	DOCUMENT ME!
`private float`	`kValue`	DOCUMENT ME!
`private javax.swing.JLabel`	`labelDilation`	user-interface for setting the cell-radius dilation (multiple of cell expected radius).
`private javax.swing.JLabel`	`labelGaussZ`	DOCUMENT ME!
`private javax.swing.JLabel`	`labelRadius`	user-interface for setting the estimated cell-radius (pixels).
`private javax.swing.JLabel`	`labelResampling`	user-interface for setting the uniform-resampling constraint contribution:.
`private javax.swing.JLabel`	`labelShape`	user-interface for setting the shape constraint contribution:.
`private javax.swing.JLabel`	`labelSize`	user-interface for setting the size constraint contribution:.
`private javax.swing.JLabel`	`labelVelocity`	user-interface for setting the initial cell velocity:.
`private javax.swing.JRadioButton`	`propagate`	DOCUMENT ME!
`private boolean`	`propagationFlag`	DOCUMENT ME!
`private float`	`radiusConstraint`	Default cell radius (pixels).
`private boolean`	`removeOriginal`	DOCUMENT ME!
`private javax.swing.JCheckBox`	`removeOriginalCheckBox`	DOCUMENT ME!
`private float`	`resamplingConstraint`	default sampling constraint contribution:.
`private ModelImage`	`resultImage`	DOCUMENT ME!
`private float`	`scaleX`	DOCUMENT ME!
`private float`	`scaleY`	DOCUMENT ME!
`private float`	`scaleZ`	DOCUMENT ME!
`private static long`	`serialVersionUID`	Use serialVersionUID for interoperability.
`private float`	`shapeConstraint`	default shape constraint contribution:.
`private float[]`	`sigmas`	DOCUMENT ME!
`private javax.swing.JRadioButton`	`singleSlice`	DOCUMENT ME!
`private float`	`sizeConstraint`	default size constraint contribution:.
`private float`	`smoothness`	DOCUMENT ME!
`private VOI`	`srcVOI`	DOCUMENT ME!
`private javax.swing.JTextField`	`textBoundaryIterations`	DOCUMENT ME!
`private javax.swing.JTextField`	`textDilation`	DOCUMENT ME!
`private javax.swing.JTextField`	`textDx`	DOCUMENT ME!
`private javax.swing.JTextField`	`textDy`	DOCUMENT ME!
`private javax.swing.JTextField`	`textGaussX`	DOCUMENT ME!
`private javax.swing.JTextField`	`textGaussY`	DOCUMENT ME!
`private javax.swing.JTextField`	`textGaussZ`	DOCUMENT ME!
`private javax.swing.JTextField`	`textGVFIterations`	DOCUMENT ME!
`private javax.swing.JTextField`	`textK`	DOCUMENT ME!
`private javax.swing.JTextField`	`textRadius`	DOCUMENT ME!
`private javax.swing.JTextField`	`textResampling`	DOCUMENT ME!
`private javax.swing.JTextField`	`textShape`	DOCUMENT ME!
`private javax.swing.JTextField`	`textSize`	DOCUMENT ME!
`private javax.swing.JTextField`	`textSmoothness`	DOCUMENT ME!
`private java.lang.String[]`	`titles`	DOCUMENT ME!
`private float`	`velocityDx`	default initial velocity (dx):.
`private float`	`velocityDy`	default initial velocity (dx):.
`private java.awt.Color`	`voiColor`	DOCUMENT ME!
`private ViewVOIVector`	`VOIs`	DOCUMENT ME!

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogBase
applyButton, bar, cancelButton, cancelFlag, closeButton, HELP, helpButton, mainDialogPanel, NEW, OKButton, parentFrame, progressBar, REPLACE, runInSeparateThread, runningScriptFlag, runQuiet, serif12, serif12B, voiManager

Fields inherited from class javax.swing.JDialog
accessibleContext, rootPane, rootPaneCheckingEnabled

Fields inherited from class java.awt.Dialog
DEFAULT_MODALITY_TYPE

Fields inherited from class java.awt.Component
BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver
ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Fields inherited from interface javax.swing.WindowConstants
DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, EXIT_ON_CLOSE, HIDE_ON_CLOSE

Constructor Summary

Constructors
Constructor Description

JDialogAGVF(java.awt.Frame theParentFrame, ModelImage im)
Creates new dialog for finding the GVF.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`actionPerformed(java.awt.event.ActionEvent event)`	When the OK button is pressed, sets variables and calls the algorithm.
`void`	`algorithmPerformed(AlgorithmBase algorithm)`	This method is required if the AlgorithmPerformed interface is implemented.
`private void`	`init()`	Initializes GUI variables and displays dialog.

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogBase
buildApplyButton, buildButtons, buildCancelButton, buildCancelButton, buildCloseButton, buildHelpButton, buildImageComboBox, buildOKButton, buildOKButton, buildOKCancelButtons, buildTitledBorder, buildTitledBorder, createLabel, createProgressBar, createProgressBar, createTextField, focusGained, focusLost, getDialogName, isCancelled, isQuietRunning, isRunInSeparateThread, isScriptRunning, itemStateChanged, loadDefaults, loadDefaults, makeImageName, makeString, openNewFrame, saveDefaults, saveDefaults, setLeftHandSystem, setQuietRunning, setScriptRunning, setSeparateThread, setVisible, setVisible, setVisibleMenuBar, setVisibleStandard, setVOIManager, setWCSystem, testParameter, testParameterMin, updateFFTFileInfo, updateFileInfo, updateFileInfoOtherModality, updateFileInfoStatic, updateFileInfoStatic, updateFileTypeInfo, updateFileTypeInfo, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class javax.swing.JDialog
addImpl, createRootPane, dialogInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update

Methods inherited from class java.awt.Dialog
addNotify, getModalityType, getTitle, hide, isModal, isResizable, isUndecorated, setBackground, setModal, setModalityType, setOpacity, setResizable, setShape, setTitle, setUndecorated, show, toBack

Methods inherited from class java.awt.Window
addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeNotify, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImage, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, toFront

Methods inherited from class java.awt.Container
add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component
action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setMixingCutoutShape, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.awt.event.ItemListener
itemStateChanged

- Field Detail
  - serialVersionUID
```
private static final long serialVersionUID
```
    Use serialVersionUID for interoperability.
    
    See Also:
    
    Constant Field Values
  - agvfAlgo
```
private AlgorithmAGVF agvfAlgo
```
    DOCUMENT ME!
  - boundaryIterations
```
private int boundaryIterations
```
    DOCUMENT ME!
  - checkboxDisplay
```
private javax.swing.JCheckBox checkboxDisplay
```
    DOCUMENT ME!
  - dilation
```
private float dilation
```
    default dilation:.
  - do25D
```
private boolean do25D
```
    DOCUMENT ME!
  - do25DCheckBox
```
private javax.swing.JCheckBox do25DCheckBox
```
    DOCUMENT ME!
  - doCellTracking
```
private boolean doCellTracking
```
    When true, do a Cell-tracking version of Active GVF Contours:.
  - doCellTrackingCheckBox
```
private javax.swing.JCheckBox doCellTrackingCheckBox
```
    Checkbox to turn cell-tracking on/off:.
  - doDilate
```
private boolean doDilate
```
    When true, dilate the cell radius before finding the next contour:.
  - doDilateCheckBox
```
private javax.swing.JCheckBox doDilateCheckBox
```
    Checkbox to turn cell-tracking on/off:.
  - groupNum
```
private int groupNum
```
    DOCUMENT ME!
  - gvfIterations
```
private int gvfIterations
```
    DOCUMENT ME!
  - image
```
private ModelImage image
```
    DOCUMENT ME!
  - kValue
```
private float kValue
```
    DOCUMENT ME!
  - labelDilation
```
private javax.swing.JLabel labelDilation
```
    user-interface for setting the cell-radius dilation (multiple of cell expected radius).
  - labelGaussZ
```
private javax.swing.JLabel labelGaussZ
```
    DOCUMENT ME!
  - labelRadius
```
private javax.swing.JLabel labelRadius
```
    user-interface for setting the estimated cell-radius (pixels).
  - labelResampling
```
private javax.swing.JLabel labelResampling
```
    user-interface for setting the uniform-resampling constraint contribution:.
  - labelShape
```
private javax.swing.JLabel labelShape
```
    user-interface for setting the shape constraint contribution:.
  - labelSize
```
private javax.swing.JLabel labelSize
```
    user-interface for setting the size constraint contribution:.
  - labelVelocity
```
private javax.swing.JLabel labelVelocity
```
    user-interface for setting the initial cell velocity:.
  - propagate
```
private javax.swing.JRadioButton propagate
```
    DOCUMENT ME!
  - propagationFlag
```
private boolean propagationFlag
```
    DOCUMENT ME!
  - radiusConstraint
```
private float radiusConstraint
```
    Default cell radius (pixels).
  - removeOriginal
```
private boolean removeOriginal
```
    DOCUMENT ME!
  - removeOriginalCheckBox
```
private javax.swing.JCheckBox removeOriginalCheckBox
```
    DOCUMENT ME!
  - resamplingConstraint
```
private float resamplingConstraint
```
    default sampling constraint contribution:.
  - resultImage
```
private ModelImage resultImage
```
    DOCUMENT ME!
  - scaleX
```
private float scaleX
```
    DOCUMENT ME!
  - scaleY
```
private float scaleY
```
    DOCUMENT ME!
  - scaleZ
```
private float scaleZ
```
    DOCUMENT ME!
  - shapeConstraint
```
private float shapeConstraint
```
    default shape constraint contribution:.
  - sigmas
```
private float[] sigmas
```
    DOCUMENT ME!
  - singleSlice
```
private javax.swing.JRadioButton singleSlice
```
    DOCUMENT ME!
  - sizeConstraint
```
private float sizeConstraint
```
    default size constraint contribution:.
  - smoothness
```
private float smoothness
```
    DOCUMENT ME!
  - srcVOI
```
private VOI srcVOI
```
    DOCUMENT ME!
  - textBoundaryIterations
```
private javax.swing.JTextField textBoundaryIterations
```
    DOCUMENT ME!
  - textDilation
```
private javax.swing.JTextField textDilation
```
    DOCUMENT ME!
  - textDx
```
private javax.swing.JTextField textDx
```
    DOCUMENT ME!
  - textDy
```
private javax.swing.JTextField textDy
```
    DOCUMENT ME!
  - textGaussX
```
private javax.swing.JTextField textGaussX
```
    DOCUMENT ME!
  - textGaussY
```
private javax.swing.JTextField textGaussY
```
    DOCUMENT ME!
  - textGaussZ
```
private javax.swing.JTextField textGaussZ
```
    DOCUMENT ME!
  - textGVFIterations
```
private javax.swing.JTextField textGVFIterations
```
    DOCUMENT ME!
  - textK
```
private javax.swing.JTextField textK
```
    DOCUMENT ME!
  - textRadius
```
private javax.swing.JTextField textRadius
```
    DOCUMENT ME!
  - textResampling
```
private javax.swing.JTextField textResampling
```
    DOCUMENT ME!
  - textShape
```
private javax.swing.JTextField textShape
```
    DOCUMENT ME!
  - textSize
```
private javax.swing.JTextField textSize
```
    DOCUMENT ME!
  - textSmoothness
```
private javax.swing.JTextField textSmoothness
```
    DOCUMENT ME!
  - titles
```
private java.lang.String[] titles
```
    DOCUMENT ME!
  - velocityDx
```
private float velocityDx
```
    default initial velocity (dx):.
  - velocityDy
```
private float velocityDy
```
    default initial velocity (dx):.
  - voiColor
```
private java.awt.Color voiColor
```
    DOCUMENT ME!
  - VOIs
```
private ViewVOIVector VOIs
```
    DOCUMENT ME!
- Constructor Detail
  - JDialogAGVF
```
public JDialogAGVF(java.awt.Frame theParentFrame,
                   ModelImage im)
```
    Creates new dialog for finding the GVF.
    
    Parameters:
    
    theParentFrame - Parent frame
    
    im - Source image
- Method Detail
  - actionPerformed
```
public void actionPerformed(java.awt.event.ActionEvent event)
```
    When the OK button is pressed, sets variables and calls the algorithm. When the cancel button is pressed, closes the dialog.
    
    Specified by:
    
    actionPerformed in interface java.awt.event.ActionListener
    
    Overrides:
    
    actionPerformed in class JDialogBase
    
    Parameters:
    
    event - Event that triggers function
  - algorithmPerformed
```
public void algorithmPerformed(AlgorithmBase algorithm)
```
    This method is required if the AlgorithmPerformed interface is implemented. It is called by the algorithm when it has completed or failed to to complete, so that the dialog can be display the result image and/or clean up.
    
    Specified by:
    
    algorithmPerformed in interface AlgorithmInterface
    
    Parameters:
    
    algorithm - Algorithm that caused the event.
  - init
```
private void init()
```
    Initializes GUI variables and displays dialog.

Class JDialogAGVF

Nested Class Summary

Nested classes/interfaces inherited from class gov.nih.mipav.view.dialogs.JDialogBase

Nested classes/interfaces inherited from class javax.swing.JDialog

Nested classes/interfaces inherited from class java.awt.Dialog

Nested classes/interfaces inherited from class java.awt.Window

Nested classes/interfaces inherited from class java.awt.Container

Nested classes/interfaces inherited from class java.awt.Component

Field Summary

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogBase

Fields inherited from class javax.swing.JDialog

Fields inherited from class java.awt.Dialog

Fields inherited from class java.awt.Component

Fields inherited from interface java.awt.image.ImageObserver

Fields inherited from interface javax.swing.WindowConstants

Constructor Summary

Method Summary

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogBase

Methods inherited from class javax.swing.JDialog

Methods inherited from class java.awt.Dialog

Methods inherited from class java.awt.Window

Methods inherited from class java.awt.Container

Methods inherited from class java.awt.Component

Methods inherited from class java.lang.Object

Methods inherited from interface java.awt.event.ItemListener

Field Detail

serialVersionUID

agvfAlgo

boundaryIterations

checkboxDisplay

dilation

do25D

do25DCheckBox

doCellTracking

doCellTrackingCheckBox

doDilate

doDilateCheckBox

groupNum

gvfIterations

image

kValue

labelDilation

labelGaussZ

labelRadius

labelResampling

labelShape

labelSize

labelVelocity

propagate

propagationFlag

radiusConstraint

removeOriginal

removeOriginalCheckBox

resamplingConstraint

resultImage

scaleX

scaleY

scaleZ

shapeConstraint

sigmas

singleSlice

sizeConstraint

smoothness

srcVOI

textBoundaryIterations

textDilation

textDx

textDy

textGaussX

textGaussY

textGaussZ

textGVFIterations

textK

textRadius

textResampling

textShape

textSize

textSmoothness

titles

velocityDx