java.lang.Object
- java.awt.Component
- - java.awt.Container
  - - java.awt.Window
    - - java.awt.Frame
      - javax.swing.JFrame
        
        gov.nih.mipav.view.ViewJFrameBase
        
        gov.nih.mipav.view.ViewJFramePaintVasculature

All Implemented Interfaces:

ViewImageUpdateInterface, java.awt.event.ActionListener, java.awt.event.ComponentListener, java.awt.event.WindowListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, java.util.EventListener, javax.accessibility.Accessible, javax.swing.event.ChangeListener, javax.swing.RootPaneContainer, javax.swing.WindowConstants
```
public class ViewJFramePaintVasculature
extends ViewJFrameBase
```
Generates a MIP image from a 3D volume. When the user clicks on a pixel of the MIP, a region grow is performed starting at the point where the clicked intensity occurs.
Rotation of the volume to take different MIPs is something that might be useful to add (it's been partially added (see the MIP menu), but it is untested..).

Not tested with color images... probably won't work.

Right now, the MIP and the volume partially share the same LUT.

Author:

Evan McCreedy

See Also:

ViewJFrameImage, Serialized Form

Nested Class Summary
- Nested classes/interfaces inherited from class javax.swing.JFrame
  javax.swing.JFrame.AccessibleJFrame
- Nested classes/interfaces inherited from class java.awt.Frame
  java.awt.Frame.AccessibleAWTFrame
- Nested classes/interfaces inherited from class java.awt.Window
  java.awt.Window.AccessibleAWTWindow, java.awt.Window.Type
- Nested classes/interfaces inherited from class java.awt.Container
  java.awt.Container.AccessibleAWTContainer
- Nested classes/interfaces inherited from class java.awt.Component
  java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

Fields
Modifier and Type	Field	Description
`protected ViewJComponentEditImage`	`componentImage`	Display of the MIP image.
`protected int`	`fudgeFactor`	Frame adjustment to keep the frame from being just small enough for the ScrollPane to display the scroll bars.
`protected float`	`heightResFactor`	Storage for correction parameters where datasets have non isotropic values.
`protected float[]`	`imageBuffer`	Buffer used to store image intensities the presently viewed slice of image.
`protected boolean`	`logMagDisplay`	Flag indicating whether or not that the image should be displayed in Log scale.
`protected float[]`	`mipBuffer`	Buffer to store the MIP image that results from the raytrace.
`protected int[]`	`mipExtents`	The dimensions of the MIP image.
`protected ModelImage`	`mipImage`	MIP image generated from the volume.
`protected java.util.Hashtable<java.lang.Integer,java.lang.Float>`	`mipZTable`	Table which holds the z coordinate on the 3D volume for a point (x,y) on the 2D MIP image.
`protected JDialogPaintVasculature`	`paintDialog`	Dialog to facilitate vasculature painting.
`protected ViewJFrameBase`	`parent`	Parent frame of this frame.
`protected int[]`	`pixBuffer`	Integer buffer (4 bytes that stores the concatenated Alpha (1 byte), Red (1 byte), Green ( 1 byte ), Blue (1 byte ) data.
`protected float[]`	`resols`	Storage of the image voxel resolutions.
`private javax.swing.JScrollPane`	`scrollPane`	The scrollPane where the image is displayed.
`protected VOI`	`seedPoints`	VOI containing the possible seed points.
`private static long`	`serialVersionUID`	Use serialVersionUID for interoperability.
`protected int[]`	`units`	Storage of the resolution units of measure.
`protected float`	`widthResFactor`	Storage for correction parameters where datasets have non isotropic values.
`protected int`	`xScreen`	Width of the display screen.
`protected int`	`yScreen`	Height of the display screen.
`protected float`	`zoom`	Defaults magnification of image to 1.

Fields inherited from class gov.nih.mipav.view.ViewJFrameBase
absoluteGoToButton, absoluteGoToPanel, absoluteLabel, absoluteLabelVals, absolutePanel, absoluteXLabel, absoluteXTextField, absoluteYLabel, absoluteYTextField, absoluteZLabel, absoluteZTextField, alphaBlend, defaultLUTa, defaultLUTb, displayMode, IMAGE_A, IMAGE_A_B, IMAGE_B, imageA, imageB, isClosing, linkedScrolling, linkFrame, linkTriFrame, LUTa, LUTb, progressBar, scannerLPS_APLabel, scannerLPS_APTextField, scannerLPS_GoToButton, scannerLPS_GoToPanel, scannerLPS_ISLabel, scannerLPS_ISTextField, scannerLPS_RLLabel, scannerLPS_RLTextField, scannerLPSLabel, scannerLPSLabelVals, scannerLPSPanel, scannerRAS_APLabel, scannerRAS_APTextField, scannerRAS_GoToButton, scannerRAS_GoToPanel, scannerRAS_ISLabel, scannerRAS_ISTextField, scannerRAS_RLLabel, scannerRAS_RLTextField, scannerRASLabel, scannerRASLabelVals, scannerRASPanel, scannerTabbedPane, tabbedPane, talGoToButton, talGoToPanel, talXLabel, talXTextField, talYLabel, talYTextField, talZLabel, talZTextField, userInterface, zoomMode

Fields inherited from class javax.swing.JFrame
accessibleContext, rootPane, rootPaneCheckingEnabled

Fields inherited from class java.awt.Frame
CROSSHAIR_CURSOR, DEFAULT_CURSOR, E_RESIZE_CURSOR, HAND_CURSOR, ICONIFIED, MAXIMIZED_BOTH, MAXIMIZED_HORIZ, MAXIMIZED_VERT, MOVE_CURSOR, N_RESIZE_CURSOR, NE_RESIZE_CURSOR, NORMAL, NW_RESIZE_CURSOR, S_RESIZE_CURSOR, SE_RESIZE_CURSOR, SW_RESIZE_CURSOR, TEXT_CURSOR, W_RESIZE_CURSOR, WAIT_CURSOR

Fields inherited from class java.awt.Component
BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver
ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Fields inherited from interface javax.swing.WindowConstants
DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, EXIT_ON_CLOSE, HIDE_ON_CLOSE

Constructor Summary

Constructors
Constructor	Description
`ViewJFramePaintVasculature(ModelImage img, ModelLUT lut, java.awt.Dimension loc, ViewJFrameBase frame)`	Constructs the MIP frame and pops up the region grow dialog.

Method Summary

All Methods Static Methods Instance Methods Concrete Methods Deprecated Methods
Modifier and Type	Method	Description
`void`	`actionPerformed(java.awt.event.ActionEvent event)`	Listen for events from the MIP frame GUI.
`void`	`calcMIPBuffer(int firstDim, int secondDim, int thirdDim)`	Generates a MIP image from the volume.
`void`	`close()`	Closes window and disposes of frame and component.
`void`	`componentResized(java.awt.event.ComponentEvent event)`	Resizes frame and all components.
`protected static double`	`distance(WildMagic.LibFoundation.Mathematics.Vector3f pt1, WildMagic.LibFoundation.Mathematics.Vector3f pt2)`	Calculates the 3D euclidian distance between two points.
`void`	`finalize()`	Cleans memory.
`void`	`findSeedPoints(int val)`	Mark all points within the image which match a certain intensity with point VOIs.
`ViewJComponentEditImage`	`getComponentImage()`	Returns the reference to the component image.
`ViewControlsImage`	`getControls()`	Placeholder.
`ModelImage`	`getImageA()`	Returns the reference to mipImage.
`ModelImage`	`getImageB()`	Deprecated. DOCUMENT ME!
`float`	`getMIPZValue(int index)`	Gets the Z value where a pixel in the MIP image occurred in the volume.
`ViewJFrameBase`	`getParentFrame()`	Get the parent frame of this MIP image frame.
`ModelRGB`	`getRGBTA()`	Gets the RGB LUT table for ARGB image A.
`ModelRGB`	`getRGBTB()`	Deprecated. DOCUMENT ME!
`VOI`	`getSeedPoints()`	Return the points that have been marked on the MIP as possible seed points.
`private void`	`initComponentImage()`	Construct the component image which contains the MIP image (should be called after calcMIPBuffer).
`void`	`initFrame(java.awt.Dimension loc)`	Initializes the 2D MIP image frame.
`void`	`removeControls()`	Placeholder.
`void`	`setActiveImage(int val)`	Deprecated. DOCUMENT ME!
`void`	`setAlphaBlend(int val)`	Deprecated. DOCUMENT ME!
`void`	`setControls()`	Placeholder.
`void`	`setEnabled(boolean flag)`	Controls whether or not the images/VOIs of the frame can be modified.
`void`	`setImageB(ModelImage imB)`	Deprecated. DOCUMENT ME!
`void`	`setLUTa(ModelLUT LUT)`	Sets the LUT for image A.
`void`	`setPaintBitmapSwitch(boolean val)`	Deprecated. DOCUMENT ME!
`void`	`setRGBTA(ModelRGB RGBT)`	Sets the RGB LUT table for ARGB image A.
`void`	`setRGBTB(ModelRGB val)`	Deprecated. DOCUMENT ME!
`void`	`setSlice(int val)`	Deprecated. DOCUMENT ME!
`void`	`setTimeSlice(int val)`	Deprecated. DOCUMENT ME!
`void`	`setTitle()`	Sets the title of the frame with the image name of slice location.
`void`	`updateFrame(float sX, float sY)`	Updates the this frame's size the compnents sizes.
`boolean`	`updateImageExtents()`	This methods calls the componentImage's REPAINT method to redraw the screen.
`boolean`	`updateImages()`	This methods calls the componentImage's update method to redraw the screen - fastest of the three update methods.
`boolean`	`updateImages(boolean forceShow)`	This methods calls the componentImage's update method to redraw the screen.
`boolean`	`updateImages(ModelLUT _LUTa, ModelLUT _LUTb, boolean forceShow, int interpMode)`	This methods calls the componentImage's update method to redraw the screen.
`void`	`windowClosing(java.awt.event.WindowEvent event)`	Closes window and disposes of frame and component.

Methods inherited from class gov.nih.mipav.view.ViewJFrameBase
about, buildLabelPanel, canCloseImageBAfterLoad, close, closeImageB, componentHidden, componentMoved, componentShown, getAlphaBlend, getDefaultLUTa, getDefaultLUTb, getDisplayMode, getImageNameA, getImageNameB, getLastState, getLUTa, getLUTb, getTriImg, getUserInterface, handleMaskPopupMenu, handlePaintToMaskPopupMenu, handleZoomPopupMenu, initExtents, initImageBuffer, initLUT, initNumSlices, initPixelBuffer, initResFactor, initResolutions, initRGB, initSlicePositions, initUnits, initZoom, loadAllVOIs, loadAllVOIsFrom, loadImage, loadLUT, loadLUTandTransferFunctionFrom, loadLUTandTransferFunctionFrom, makeString, newFrameBeenCreated, openVOI, openVOI, pickImageFile, save, save, save, saveAllVOIs, saveAllVOIsTo, saveLabels, saveLUT, saveLUTandTransferFunction, saveLUTandTransferFunction, saveLUTAs, saveLUTAs, saveVOI, saveVOIAs, saveVOIAs, saveVOIIntensities, saveVOIIntensitiesTo, setAbsPositionLabels, setEnableCloseImageBAfterLoad, setImageA, setLastState, setLinkedFrame, setLinkedTriFrame, setLUTb, setLUTs, setMessageText, setOpacityInfo, setpaintBitmap, setScannerPosition, stateChanged, windowActivated, windowClosed, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class javax.swing.JFrame
addImpl, createRootPane, frameInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setIconImage, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update

Methods inherited from class java.awt.Frame
addNotify, getCursorType, getExtendedState, getFrames, getIconImage, getMaximizedBounds, getMenuBar, getState, getTitle, isResizable, isUndecorated, remove, removeNotify, setBackground, setCursor, setExtendedState, setMaximizedBounds, setMenuBar, setOpacity, setResizable, setShape, setState, setTitle, setUndecorated

Methods inherited from class java.awt.Window
addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, hide, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, setVisible, show, toBack, toFront

Methods inherited from class java.awt.Container
add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component
action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setMixingCutoutShape, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object
clone, equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.awt.MenuContainer
getFont, postEvent

- Field Detail
  - serialVersionUID
```
private static final long serialVersionUID
```
    Use serialVersionUID for interoperability.
    
    See Also:
    
    Constant Field Values
  - componentImage
```
protected ViewJComponentEditImage componentImage
```
    Display of the MIP image.
  - fudgeFactor
```
protected int fudgeFactor
```
    Frame adjustment to keep the frame from being just small enough for the ScrollPane to display the scroll bars. Windows seems to find an inset value needing a fudge factor of 3, but Mac OS 10 (X), doesn't, and needs a fudge factor of 7 to not require scroll bars. Either way, insets + fudge-factor must equal 7.
  - heightResFactor
```
protected float heightResFactor
```
    Storage for correction parameters where datasets have non isotropic values.
  - imageBuffer
```
protected float[] imageBuffer
```
    Buffer used to store image intensities the presently viewed slice of image.
  - logMagDisplay
```
protected boolean logMagDisplay
```
    Flag indicating whether or not that the image should be displayed in Log scale. Used primarily for displaying the FFT of an image.
  - mipBuffer
```
protected float[] mipBuffer
```
    Buffer to store the MIP image that results from the raytrace.
  - mipExtents
```
protected int[] mipExtents
```
    The dimensions of the MIP image.
  - mipImage
```
protected ModelImage mipImage
```
    MIP image generated from the volume.
  - mipZTable
```
protected java.util.Hashtable<java.lang.Integer,java.lang.Float> mipZTable
```
    Table which holds the z coordinate on the 3D volume for a point (x,y) on the 2D MIP image.
  - paintDialog
```
protected JDialogPaintVasculature paintDialog
```
    Dialog to facilitate vasculature painting.
  - parent
```
protected ViewJFrameBase parent
```
    Parent frame of this frame.
  - pixBuffer
```
protected int[] pixBuffer
```
    Integer buffer (4 bytes that stores the concatenated Alpha (1 byte), Red (1 byte), Green ( 1 byte ), Blue (1 byte ) data. The ARGB values are generated by using the mipImage intensities as a index into a LUT.
  - resols
```
protected float[] resols
```
    Storage of the image voxel resolutions. One resolution value per dimension.
  - seedPoints
```
protected VOI seedPoints
```
    VOI containing the possible seed points.
  - units
```
protected int[] units
```
    Storage of the resolution units of measure. For example, mm, cm, inches ...
  - widthResFactor
```
protected float widthResFactor
```
    Storage for correction parameters where datasets have non isotropic values.
  - xScreen
```
protected int xScreen
```
    Width of the display screen.
  - yScreen
```
protected int yScreen
```
    Height of the display screen.
  - zoom
```
protected float zoom
```
    Defaults magnification of image to 1.
  - scrollPane
```
private javax.swing.JScrollPane scrollPane
```
    The scrollPane where the image is displayed.
- Constructor Detail
  - ViewJFramePaintVasculature
```
public ViewJFramePaintVasculature(ModelImage img,
                                  ModelLUT lut,
                                  java.awt.Dimension loc,
                                  ViewJFrameBase frame)
```
    Constructs the MIP frame and pops up the region grow dialog.
    
    Parameters:
    
    img - volume to perform the MIP on
    
    lut - LUT of the volume
    
    loc - where to place the frame
    
    frame - the parent frame (which must have the component image containing img)
- Method Detail
  - actionPerformed
```
public void actionPerformed(java.awt.event.ActionEvent event)
```
    Listen for events from the MIP frame GUI.
    
    Specified by:
    
    actionPerformed in interface java.awt.event.ActionListener
    
    Specified by:
    
    actionPerformed in class ViewJFrameBase
    
    Parameters:
    
    event - event triggered by GUI
  - calcMIPBuffer
```
public void calcMIPBuffer(int firstDim,
                          int secondDim,
                          int thirdDim)
```
    Generates a MIP image from the volume.
    
    Parameters:
    
    firstDim - the "x" dimension of the generated MIP
    
    secondDim - the slowest moving dimension -- the "y" dimension of the generated MIP
    
    thirdDim - the fastest moving dimension -- the one we are finding the maximum intensity of
  - close
```
public void close()
```
    Closes window and disposes of frame and component.
    
    Overrides:
    
    close in class ViewJFrameBase
  - componentResized
```
public void componentResized(java.awt.event.ComponentEvent event)
```
    Resizes frame and all components.
    
    Specified by:
    
    componentResized in interface java.awt.event.ComponentListener
    
    Overrides:
    
    componentResized in class ViewJFrameBase
    
    Parameters:
    
    event - event that triggered function
  - finalize
```
public void finalize()
              throws java.lang.Throwable
```
    Cleans memory.
    
    Overrides:
    
    finalize in class ViewJFrameBase
    
    Throws:
    
    java.lang.Throwable - if something goes wrong in the parent constructor
  - findSeedPoints
```
public void findSeedPoints(int val)
```
    Mark all points within the image which match a certain intensity with point VOIs. If points are too close to one another in the volume, only one is marked.
    
    Parameters:
    
    val - the intensity value to mark
  - getComponentImage
```
public ViewJComponentEditImage getComponentImage()
```
    Returns the reference to the component image.
    
    Returns:
    
    component image
  - getControls
```
public ViewControlsImage getControls()
```
    Placeholder.
    
    Specified by:
    
    getControls in class ViewJFrameBase
    
    Returns:
    
    null
  - getImageA
```
public ModelImage getImageA()
```
    Returns the reference to mipImage.
    
    Specified by:
    
    getImageA in class ViewJFrameBase
    
    Returns:
    
    image
  - getImageB
```
public ModelImage getImageB()
```
    Deprecated.
    DOCUMENT ME!
    
    Placeholder required by ViewJFrameBase.
    
    Specified by:
    
    getImageB in class ViewJFrameBase
    
    Returns:
    
    the second image
  - getMIPZValue
```
public float getMIPZValue(int index)
```
    Gets the Z value where a pixel in the MIP image occurred in the volume. Used to translate points on the MIP to points on the volume.
    
    Parameters:
    
    index - index into the mip buffer of the point to get ( index = x + y * xDimSize )
    
    Returns:
    
    z value of the point on the volume which was used for the MIP image point
  - getParentFrame
```
public ViewJFrameBase getParentFrame()
```
    Get the parent frame of this MIP image frame.
    
    Returns:
    
    the parent frame (the main RFAST frame)
  - getRGBTA
```
public ModelRGB getRGBTA()
```
    Gets the RGB LUT table for ARGB image A.
    
    Overrides:
    
    getRGBTA in class ViewJFrameBase
    
    Returns:
    
    RGBT the new RGB LUT to be applied to the image
  - getRGBTB
```
public ModelRGB getRGBTB()
```
    Deprecated.
    DOCUMENT ME!
    
    Placeholder required by ViewJFrameBase.
    
    Overrides:
    
    getRGBTB in class ViewJFrameBase
    
    Returns:
    
    the RGBTB data
  - getSeedPoints
```
public VOI getSeedPoints()
```
    Return the points that have been marked on the MIP as possible seed points.
    
    Returns:
    
    a VOI containing the possible seed points
  - initFrame
```
public void initFrame(java.awt.Dimension loc)
               throws java.lang.OutOfMemoryError
```
    Initializes the 2D MIP image frame.
    
    Parameters:
    
    loc - where the frame should be placed
    
    Throws:
    
    java.lang.OutOfMemoryError - if there is not enough memory available to construct the MIP window
  - removeControls
```
public void removeControls()
```
    Placeholder.
    
    Specified by:
    
    removeControls in class ViewJFrameBase
  - setActiveImage
```
public void setActiveImage(int val)
```
    Deprecated.
    DOCUMENT ME!
    
    Placeholder required by ViewJFrameBase.
    
    Specified by:
    
    setActiveImage in class ViewJFrameBase
    
    Parameters:
    
    val - the active image number
  - setAlphaBlend
```
public void setAlphaBlend(int val)
```
    Deprecated.
    DOCUMENT ME!
    
    Placeholder required by ViewJFrameBase.
    
    Specified by:
    
    setAlphaBlend in class ViewJFrameBase
    
    Parameters:
    
    val - alpha blending value
  - setControls
```
public void setControls()
```
    Placeholder.
    
    Specified by:
    
    setControls in class ViewJFrameBase
  - setEnabled
```
public void setEnabled(boolean flag)
```
    Controls whether or not the images/VOIs of the frame can be modified.
    
    Specified by:
    
    setEnabled in class ViewJFrameBase
    
    Parameters:
    
    flag - if true the image/VOIs can be modified; if false image/VOIs can NOT be modified
  - setImageB
```
public void setImageB(ModelImage imB)
```
    Deprecated.
    DOCUMENT ME!
    
    Placeholder required by ViewJFrameBase.
    
    Specified by:
    
    setImageB in class ViewJFrameBase
    
    Parameters:
    
    imB - the second image
  - setLUTa
```
public void setLUTa(ModelLUT LUT)
```
    Sets the LUT for image A.
    
    Overrides:
    
    setLUTa in class ViewJFrameBase
    
    Parameters:
    
    LUT - the LUT
  - setPaintBitmapSwitch
```
public void setPaintBitmapSwitch(boolean val)
```
    Deprecated.
    DOCUMENT ME!
    
    Placeholder required by ViewJFrameBase.
    
    Specified by:
    
    setPaintBitmapSwitch in class ViewJFrameBase
    
    Parameters:
    
    val - whether to show the paint mask
  - setRGBTA
```
public void setRGBTA(ModelRGB RGBT)
```
    Sets the RGB LUT table for ARGB image A.
    
    Specified by:
    
    setRGBTA in class ViewJFrameBase
    
    Parameters:
    
    RGBT - the new RGB LUT to be applied to the image
  - setRGBTB
```
public void setRGBTB(ModelRGB val)
```
    Deprecated.
    DOCUMENT ME!
    
    Placeholder required by ViewJFrameBase.
    
    Specified by:
    
    setRGBTB in class ViewJFrameBase
    
    Parameters:
    
    val - the RGBTB data
  - setSlice
```
public void setSlice(int val)
```
    Deprecated.
    DOCUMENT ME!
    
    Placeholder required by ViewJFrameBase.
    
    Parameters:
    
    val - the slice
  - setTimeSlice
```
public void setTimeSlice(int val)
```
    Deprecated.
    DOCUMENT ME!
    
    Placeholder required by ViewJFrameBase.
    
    Parameters:
    
    val - the time slice
  - setTitle
```
public void setTitle()
```
    Sets the title of the frame with the image name of slice location.
    
    Specified by:
    
    setTitle in class ViewJFrameBase
  - updateFrame
```
public void updateFrame(float sX,
                        float sY)
```
    Updates the this frame's size the compnents sizes. If the magnified image fits into the frame that will fit into the screen then frame and image are sized appropriately. If the frame, to fit the image, exceeds the screen size the frame remains the same size and the image magnified and placed in the scroll pane.
    
    Parameters:
    
    sX - zoom in the x dimension
    
    sY - zoom in the y dimension
  - updateImageExtents
```
public boolean updateImageExtents()
```
    This methods calls the componentImage's REPAINT method to redraw the screen. The extents on this image have changed, so the extents need to be read in again and menus, panes and slide bars adjusted accordingly.
    
    Specified by:
    
    updateImageExtents in interface ViewImageUpdateInterface
    
    Specified by:
    
    updateImageExtents in class ViewJFrameBase
    
    Returns:
    
    whether the update was successful.
    
    See Also:
    
    ViewImageUpdateInterface
  - updateImages
```
public boolean updateImages()
```
    This methods calls the componentImage's update method to redraw the screen - fastest of the three update methods.
    
    Returns:
    
    boolean confirming successful update
  - updateImages
```
public boolean updateImages(boolean forceShow)
```
    This methods calls the componentImage's update method to redraw the screen. Without LUT changes.
    
    Parameters:
    
    forceShow - forces show to re import image and calc. java image
    
    Returns:
    
    boolean confirming successful update
  - updateImages
```
public boolean updateImages(ModelLUT _LUTa,
                            ModelLUT _LUTb,
                            boolean forceShow,
                            int interpMode)
```
    This methods calls the componentImage's update method to redraw the screen.
    
    Parameters:
    
    _LUTa - LUT used to update imageA (and mipImage)
    
    _LUTb - LUT used to update imageB
    
    forceShow - forces show to re import image and calc. java image
    
    interpMode - image interpolation method (Nearest or Smooth)
    
    Returns:
    
    boolean confirming successful update
  - windowClosing
```
public void windowClosing(java.awt.event.WindowEvent event)
```
    Closes window and disposes of frame and component.
    
    Specified by:
    
    windowClosing in interface java.awt.event.WindowListener
    
    Overrides:
    
    windowClosing in class ViewJFrameBase
    
    Parameters:
    
    event - Event that triggered function
  - distance
```
protected static final double distance(WildMagic.LibFoundation.Mathematics.Vector3f pt1,
                                       WildMagic.LibFoundation.Mathematics.Vector3f pt2)
```
    Calculates the 3D euclidian distance between two points.
    
    Parameters:
    
    pt1 - first point
    
    pt2 - second point
    
    Returns:
    
    returns the distance
  - initComponentImage
```
private void initComponentImage()
```
    Construct the component image which contains the MIP image (should be called after calcMIPBuffer).

Class ViewJFramePaintVasculature

Nested Class Summary

Nested classes/interfaces inherited from class javax.swing.JFrame

Nested classes/interfaces inherited from class java.awt.Frame

Nested classes/interfaces inherited from class java.awt.Window

Nested classes/interfaces inherited from class java.awt.Container

Nested classes/interfaces inherited from class java.awt.Component

Field Summary

Fields inherited from class gov.nih.mipav.view.ViewJFrameBase

Fields inherited from class javax.swing.JFrame

Fields inherited from class java.awt.Frame

Fields inherited from class java.awt.Component

Fields inherited from interface java.awt.image.ImageObserver

Fields inherited from interface javax.swing.WindowConstants

Constructor Summary

Method Summary

Methods inherited from class gov.nih.mipav.view.ViewJFrameBase

Methods inherited from class javax.swing.JFrame

Methods inherited from class java.awt.Frame

Methods inherited from class java.awt.Window

Methods inherited from class java.awt.Container

Methods inherited from class java.awt.Component

Methods inherited from class java.lang.Object

Methods inherited from interface java.awt.MenuContainer

Field Detail

serialVersionUID

componentImage

fudgeFactor

heightResFactor

imageBuffer

logMagDisplay

mipBuffer

mipExtents

mipImage

mipZTable

paintDialog

parent

pixBuffer

resols

seedPoints

units

widthResFactor

xScreen

yScreen

zoom

scrollPane

Constructor Detail

ViewJFramePaintVasculature

Method Detail

actionPerformed

calcMIPBuffer

close

componentResized

finalize

findSeedPoints

getComponentImage

getControls

getImageA

getImageB

getMIPZValue

getParentFrame

getRGBTA

getRGBTB

getSeedPoints

initFrame

removeControls

setActiveImage

setAlphaBlend

setControls

setEnabled

setImageB

setLUTa

setPaintBitmapSwitch

setRGBTA

setRGBTB

setSlice

setTimeSlice

setTitle

updateFrame

updateImageExtents