java.lang.Object
- gov.nih.mipav.model.file.FileBase
- - gov.nih.mipav.model.file.FileXML
  - - gov.nih.mipav.model.file.FileSurfaceGiftiXML

Direct Known Subclasses:

FileSurfaceGiftiXML_WM
```
public abstract class FileSurfaceGiftiXML
extends FileXML
```
Inherits from FileXML, reads SurfaceRef.XML files based on the "surfaceref.xsd" file. Defines specific variables for reading and writing surfaceref.xml files:

Nested Class Summary
- Nested classes/interfaces inherited from class gov.nih.mipav.model.file.FileXML
  FileXML.XMLAttributes

Field Summary

Fields
Modifier and Type	Field	Description
`protected static java.lang.String[]`	`ArrayIndexingOrderValues`
`protected static java.lang.String[]`	`CoordinateSystemTransformMatrixStr`	array of strings representing the tags under in the Gifti xml schema.
`protected static java.lang.String[]`	`DataArrayAttributes`
`protected static java.lang.String[]`	`DataArrayStr`	array of strings representing the tags under in the Gifti xml schema.
`protected static java.lang.String[]`	`DataSpaceValues`
`protected static java.lang.String[]`	`DataStr`	array of strings representing the tags under in the Gifti xml schema.
`protected static java.lang.String[]`	`DataTypeValues`
`protected static java.lang.String[]`	`EncodingTypes`
`protected static java.lang.String[]`	`EndianValues`
`protected static java.lang.String[]`	`GiftiAttributes`
`protected static java.lang.String[]`	`GiftiStr`	array of strings representing the tags under in the Gifti xml schema.
`protected static java.lang.String[]`	`IntentValues`
`protected static java.lang.String[]`	`LabelStr`	array of strings representing the tags under in the Gifti xml schema.
`protected static java.lang.String[]`	`LabelTableStr`	array of strings representing the tags under in the Gifti xml schema.
`protected static java.lang.String[]`	`MatrixDataStr`	array of strings representing the tags under in the Gifti xml schema.
`protected static java.lang.String[]`	`MDStr`	array of strings representing the tags under in the Gifti xml schema.
`protected static java.lang.String[]`	`MetaDataStr`	array of strings representing the tags under in the Gifti xml schema.
`protected static java.lang.String[]`	`NameStr`	array of strings representing the tags under in the Gifti xml schema.
`protected static java.lang.String[]`	`TransformedSpaceStr`	array of strings representing the tags under in the Gifti xml schema.
`protected static java.lang.String[]`	`ValueStr`	array of strings representing the tags under in the Gifti xml schema.

Fields inherited from class gov.nih.mipav.model.file.FileXML
bw, fileDir, fileInfo, fileName, m_kHandler, MIPAV_HEADER, pInterface, TAB, tabLevel, W3C_XML_SCHEMA, XML_ENCODING, XML_HEADER

Fields inherited from class gov.nih.mipav.model.file.FileBase
BIG_ENDIAN, bitsPerPixel, fileNames, LITTLE_ENDIAN, pBarVisible, raFile, READ, READ_WRITE

Constructor Summary

Constructors
Constructor Description

FileSurfaceGiftiXML(java.lang.String fName, java.lang.String fDir)
Constructs new file object.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type Method Description

void finalize()
Prepares class for cleanup.
- Methods inherited from class gov.nih.mipav.model.file.FileXML
  closedTag, closedTag, closedTag, openTag, readHeader, setPBar
- Methods inherited from class gov.nih.mipav.model.file.FileBase
  addProgressChangeListener, bytesToDouble, bytesToFloat, bytesToInt, bytesToShort, doubleToBytes, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, floatToBytes, getBufferDouble, getBufferFloat, getBufferInt, getBufferLong, getBufferShort, getBufferUShort, getDataType, getDouble, getFloat, getInt, getLong, getProgressChangeListeners, getRaFile, getSignedShort, getString, getUInt, getUnsignedByte, getUnsignedShort, intToBytes, isBigEndian, isProgressBarVisible, linkProgress, longToBytes, readDouble, readFloat, readInt, readLong, readShort, readString, readUnsignedShort, removeProgressChangeListener, setBigEndian, setBufferFloat, setBufferInt, setBufferLong, setBufferShort, setBufferString, setDataType, setEndianess, shortToBytes, writeBytes, writeDouble, writeFloat, writeInt, writeLong, writeShort
- Methods inherited from class java.lang.Object
  clone, equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Field Detail
  - CoordinateSystemTransformMatrixStr
```
protected static final java.lang.String[] CoordinateSystemTransformMatrixStr
```
    array of strings representing the tags under in the Gifti xml schema.
  - DataStr
```
protected static final java.lang.String[] DataStr
```
    array of strings representing the tags under in the Gifti xml schema.
  - DataArrayStr
```
protected static final java.lang.String[] DataArrayStr
```
    array of strings representing the tags under in the Gifti xml schema.
  - DataArrayAttributes
```
protected static final java.lang.String[] DataArrayAttributes
```
  - IntentValues
```
protected static final java.lang.String[] IntentValues
```
  - ArrayIndexingOrderValues
```
protected static final java.lang.String[] ArrayIndexingOrderValues
```
  - DataTypeValues
```
protected static final java.lang.String[] DataTypeValues
```
  - EndianValues
```
protected static final java.lang.String[] EndianValues
```
  - EncodingTypes
```
protected static final java.lang.String[] EncodingTypes
```
  - DataSpaceValues
```
protected static final java.lang.String[] DataSpaceValues
```
  - GiftiStr
```
protected static final java.lang.String[] GiftiStr
```
    array of strings representing the tags under in the Gifti xml schema.
  - GiftiAttributes
```
protected static final java.lang.String[] GiftiAttributes
```
  - LabelStr
```
protected static final java.lang.String[] LabelStr
```
    array of strings representing the tags under in the Gifti xml schema.
  - LabelTableStr
```
protected static final java.lang.String[] LabelTableStr
```
    array of strings representing the tags under in the Gifti xml schema.
  - MatrixDataStr
```
protected static final java.lang.String[] MatrixDataStr
```
    array of strings representing the tags under in the Gifti xml schema.
  - MDStr
```
protected static final java.lang.String[] MDStr
```
    array of strings representing the tags under in the Gifti xml schema.
  - MetaDataStr
```
protected static final java.lang.String[] MetaDataStr
```
    array of strings representing the tags under in the Gifti xml schema.
  - NameStr
```
protected static final java.lang.String[] NameStr
```
    array of strings representing the tags under in the Gifti xml schema.
  - TransformedSpaceStr
```
protected static final java.lang.String[] TransformedSpaceStr
```
    array of strings representing the tags under in the Gifti xml schema.
  - ValueStr
```
protected static final java.lang.String[] ValueStr
```
    array of strings representing the tags under in the Gifti xml schema.
- Constructor Detail
  - FileSurfaceGiftiXML
```
public FileSurfaceGiftiXML(java.lang.String fName,
                           java.lang.String fDir)
```
    Constructs new file object.
    
    Parameters:
    
    fName - File name.
    
    fDir - File directory.
- Method Detail
  - finalize
```
public void finalize()
```
    Prepares class for cleanup.
    
    Overrides:
    
    finalize in class FileXML

Class FileSurfaceGiftiXML

Nested Class Summary

Nested classes/interfaces inherited from class gov.nih.mipav.model.file.FileXML

Field Summary

Fields inherited from class gov.nih.mipav.model.file.FileXML

Fields inherited from class gov.nih.mipav.model.file.FileBase

Constructor Summary

Method Summary

Methods inherited from class gov.nih.mipav.model.file.FileXML

Methods inherited from class gov.nih.mipav.model.file.FileBase

Methods inherited from class java.lang.Object

Field Detail

CoordinateSystemTransformMatrixStr

DataStr

DataArrayStr

DataArrayAttributes

IntentValues

ArrayIndexingOrderValues

DataTypeValues

EndianValues

EncodingTypes

DataSpaceValues

GiftiStr

GiftiAttributes

LabelStr

LabelTableStr

MatrixDataStr

MDStr

MetaDataStr

NameStr

TransformedSpaceStr

ValueStr

Constructor Detail

FileSurfaceGiftiXML

Method Detail

finalize