java.lang.Object
- gov.nih.mipav.model.file.FileBase
- - gov.nih.mipav.model.file.FileMagnetomVision

public class FileMagnetomVision
extends FileBase

Class that reads Siemens Magnetom Vision files.

Field Summary

Fields
Modifier and Type	Field	Description
`private java.lang.String`	`fileDir`	DOCUMENT ME!
`private java.io.File`	`fileHeader`	DOCUMENT ME!
`private FileInfoMagnetomVision`	`fileInfo`	DOCUMENT ME!
`private java.lang.String`	`fileName`	DOCUMENT ME!
`private int[]`	`imgExtents`	DOCUMENT ME!
`private float[]`	`imgResols`	DOCUMENT ME!
`private int[]`	`orient`	DOCUMENT ME!

Fields inherited from class gov.nih.mipav.model.file.FileBase
BIG_ENDIAN, bitsPerPixel, fileNames, LITTLE_ENDIAN, pBarVisible, raFile, READ, READ_WRITE

Constructor Summary

Constructors
Constructor Description

FileMagnetomVision(java.lang.String fileName, java.lang.String fileDir)
Magnetom Vision reader/writer constructor.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`close()`	Closes random access file.
`void`	`finalize()`	Prepares this class for cleanup.
`FileInfoMagnetomVision`	`getFileInfo()`	Get the file info generated by reading in the magnetom vision file.
`ModelLUT`	`getModelLUT()`	Returns null.
`boolean`	`isMagnetomVision()`	Looks for the string "MAGNETOM VISION" in image header ID.
`FileInfoMagnetomVision`	`readHeader()`	Reads the Magnetom file header and data.
`void`	`readImage(short[] buffer)`	Reads a slice of data at a time and stores the results in the buffer.
`void`	`setFileName(java.lang.String fName)`	Accessor that sets the file name and allocates new FileInfo, File and RandomAccess file objects.

Methods inherited from class gov.nih.mipav.model.file.FileBase
addProgressChangeListener, bytesToDouble, bytesToFloat, bytesToInt, bytesToShort, doubleToBytes, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, floatToBytes, getBufferDouble, getBufferFloat, getBufferInt, getBufferLong, getBufferShort, getBufferUShort, getDataType, getDouble, getFloat, getInt, getLong, getProgressChangeListeners, getRaFile, getSignedShort, getString, getUInt, getUnsignedByte, getUnsignedShort, intToBytes, isBigEndian, isProgressBarVisible, linkProgress, longToBytes, readDouble, readFloat, readInt, readLong, readShort, readString, readUnsignedShort, removeProgressChangeListener, setBigEndian, setBufferFloat, setBufferInt, setBufferLong, setBufferShort, setBufferString, setDataType, setEndianess, shortToBytes, writeBytes, writeDouble, writeFloat, writeInt, writeLong, writeShort

Methods inherited from class java.lang.Object
clone, equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Field Detail
  - fileDir
```
private java.lang.String fileDir
```
    DOCUMENT ME!
  - fileHeader
```
private java.io.File fileHeader
```
    DOCUMENT ME!
  - fileInfo
```
private FileInfoMagnetomVision fileInfo
```
    DOCUMENT ME!
  - fileName
```
private java.lang.String fileName
```
    DOCUMENT ME!
  - imgExtents
```
private int[] imgExtents
```
    DOCUMENT ME!
  - imgResols
```
private float[] imgResols
```
    DOCUMENT ME!
  - orient
```
private int[] orient
```
    DOCUMENT ME!
- Constructor Detail
  - FileMagnetomVision
```
public FileMagnetomVision(java.lang.String fileName,
                          java.lang.String fileDir)
                   throws java.io.IOException
```
    Magnetom Vision reader/writer constructor.
    
    Parameters:
    
    fileName - file name
    
    fileDir - file directory
    
    Throws:
    
    java.io.IOException - if there is an error making the file
- Method Detail
  - finalize
```
public void finalize()
```
    Prepares this class for cleanup. Calls the finalize method for existing elements, closes any open files and sets other elements to null.
    
    Overrides:
    
    finalize in class FileBase
  - close
```
public void close()
           throws java.io.IOException
```
    Closes random access file.
    
    Throws:
    
    java.io.IOException - DOCUMENT ME!
  - getFileInfo
```
public FileInfoMagnetomVision getFileInfo()
```
    Get the file info generated by reading in the magnetom vision file.
    
    Returns:
    
    The file info.
  - getModelLUT
```
public ModelLUT getModelLUT()
```
    Returns null.
    
    Returns:
    
    null.
  - isMagnetomVision
```
public boolean isMagnetomVision()
                         throws java.io.IOException
```
    Looks for the string "MAGNETOM VISION" in image header ID. If present, the image is a Siemens Magnetom Vision format.
    
    Returns:
    
    boolean true if the string "MAGNETOM VISION" was found in the image header.
    
    Throws:
    
    java.io.IOException - Indicates error reading the file
  - readHeader
```
public FileInfoMagnetomVision readHeader()
                                  throws java.io.IOException
```
    Reads the Magnetom file header and data.
    
    Returns:
    
    Returns an object containing the file info.
    
    Throws:
    
    java.io.IOException - if there is an error reading the file
  - readImage
```
public void readImage(short[] buffer)
               throws java.io.IOException
```
    Reads a slice of data at a time and stores the results in the buffer.
    
    Parameters:
    
    buffer - Buffer where the image is stored
    
    Throws:
    
    java.io.IOException - if there is an error reading the file
  - setFileName
```
public void setFileName(java.lang.String fName)
                 throws java.io.IOException
```
    Accessor that sets the file name and allocates new FileInfo, File and RandomAccess file objects.
    
    Parameters:
    
    fName - File name.
    
    Throws:
    
    java.io.IOException - if there is an error constructing the files.

Class FileMagnetomVision

Field Summary

Fields inherited from class gov.nih.mipav.model.file.FileBase

Constructor Summary

Method Summary

Methods inherited from class gov.nih.mipav.model.file.FileBase

Methods inherited from class java.lang.Object

Field Detail

fileDir

fileHeader

fileInfo

fileName

imgExtents

imgResols

orient

Constructor Detail

FileMagnetomVision

Method Detail

finalize

close

getFileInfo

getModelLUT

isMagnetomVision

readHeader

readImage

setFileName