Package gov.nih.mipav.model.file

Class FileInfoLIFF

java.lang.Object

gov.nih.mipav.model.structures.ModelSerialCloneable

gov.nih.mipav.model.file.FileInfoBase

gov.nih.mipav.model.file.FileInfoLIFF

All Implemented Interfaces:

java.io.Serializable, java.lang.Cloneable

public class FileInfoLIFF
extends FileInfoBase

File info storage container.

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class gov.nih.mipav.model.file.FileInfoBase

FileInfoBase.AxisOrientation, FileInfoBase.ImageOrientation, FileInfoBase.Modality, FileInfoBase.Unit, FileInfoBase.UnitType

Field Summary

Fields

Modifier and Type	Field	Description
(package private) double	autoContrast
(package private) double	binning
(package private) short	bitDepth
(package private) java.lang.String	camera
(package private) java.lang.String[]	channelArray
(package private) int	channelNumber
(package private) double	colorization
(package private) double	cooling
(package private) double	CRIRGBFilter
(package private) double	digitalGain
(package private) double[]	emissionFilterChangerArray
(package private) double[]	excitationArray
(package private) double[]	exposureArray
(package private) double[]	filterTurretArray
(package private) double	focusPosition
(package private) double	gain
private java.lang.String[]	layerString	Use serialVersionUID for interoperability.
(package private) double	leicaCondenserTurret
(package private) double[]	leicaFilterCubeArray
(package private) double[]	leicaFIMArray
(package private) double	leicaICTurret
(package private) double	leicaMagnificationChanger
(package private) double	lightMode
(package private) double	ludlAuxWheel1
(package private) double[]	ludlMainWheel1Array
(package private) double	microfocusPosition
(package private) java.lang.String	microscope
(package private) double	objectiveName
(package private) double	objectivePosition
(package private) double	offset
(package private) double[]	sensitivityArray
(package private) double	SutterDG4Filter
(package private) double[]	SutterL10Filter1Array
(package private) double[]	SutterL10Filter2Array
(package private) double[]	wavelengthArray
(package private) double	xPosition
(package private) double	yPosition
(package private) double	zPosition

Fields inherited from class gov.nih.mipav.model.file.FileInfoBase

ANGSTROMS, ANGSTROMS_STRING, AXIAL, axisOrientation, axisOrientationStr, BIOMAGNETIC_IMAGING, cameraMake, cameraModel, CENTIMETERS, CENTIMETERS_STRING, COLOR_FLOW_DOPPLER, COMPRESSION_BZIP2, COMPRESSION_GZIP, COMPRESSION_NONE, COMPRESSION_ZIP, COMPUTED_RADIOGRAPHY, COMPUTED_TOMOGRAPHY, conversionSpaceTimeUnits, CORONAL, DEGREES, DEGREES_STRING, DIAPHANOGRAPHY, DIGITAL_RADIOGRAPHY, DUPLEX_DOPPLER, ENDOSCOPY, exposureTime, EXTERNAL_CAMERA_PHOTOGRAPHY, FA, fileName, fileSuffix, FNumber, focalLength, focalLength35, GENERAL_MICROSCOPY, HARDCOPY, HOURS, HOURS_STRING, HZ, HZ_STRING, ICG, imageOrientation, INCHES, INCHES_STRING, INTRAORAL_RADIOGRAPHY, ISOSpeedRating, KILOMETERS, KILOMETERS_STRING, LASER_SURFACE_SCAN, MAGNETIC_RESONANCE, MAGNETIC_RESONANCE_ANGIOGRAPHY, MAGNETIC_RESONANCE_SPECTROSCOPY, MAMMOGRAPHY, METERS, METERS_STRING, MICROMETERS, MICROMETERS_STRING, MICROSEC, MICROSEC_STRING, MILES, MILES_STRING, MILLIMETERS, MILLIMETERS_STRING, MILLISEC, MILLISEC_STRING, MILS, MILS_STRING, MINUTES, MINUTES_STRING, modality, NANOMETERS, NANOMETERS_STRING, NANOSEC, NANOSEC_STRING, NUCLEAR_MEDICINE, ORI_A2P_TYPE, ORI_I2S_TYPE, ORI_L2R_TYPE, ORI_P2A_TYPE, ORI_R2L_TYPE, ORI_S2I_TYPE, ORI_UNKNOWN_TYPE, origin, OTHER, PANORAMIC_XRAY, POSITRON_EMISSION_TOMOGRAPHY, PPM, PPM_STRING, RADIO_FLUOROSCOPY, RADIOGRAPHIC_IMAGING, RADIOTHERAPY_DOSE, RADIOTHERAPY_IMAGE, RADIOTHERAPY_PLAN, RADIOTHERAPY_RECORD, RADIOTHERAPY_STRUCTURE_SET, RADS, RADS_STRING, RED_FREE, SAGITTAL, SECONDS, SECONDS_STRING, SINGLE_PHOTON_EMISSION_COMPUTED_TOMOGRAPHY, SLIDE_MICROSCOPY, sUnits, tagDescription, tagName, THERMOGRAPHY, TRANSFORM_ANOTHER_DATASET, TRANSFORM_MNI_152, TRANSFORM_SCANNER_ANATOMICAL, TRANSFORM_TALAIRACH_TOURNOUX, TRANSFORM_UNKNOWN, tUnits, ULTRASOUND, unitsOfMeasure, UNKNOWN_MEASURE, UNKNOWN_MODALITY, UNKNOWN_ORIENT, UNKNOWN_STRING, XRAY_ANGIOGRAPHY

Constructor Summary

Constructors

Constructor	Description
FileInfoLIFF(java.lang.String name, java.lang.String directory, int format)	File info storage constructor.

Method Summary

Modifier and Type	Method	Description
void	displayAboutInfo(JDialogBase dlog, TransMatrix matrix)	Displays the file information.
void	setAutoContrast(double autoContrast)
void	setBinning(double binning)
void	setBitDepth(short bitDepth)
void	setCamera(java.lang.String camera)
void	setChannelArray(java.lang.String[] channelArray)
void	setColorization(double colorization)
void	setCooling(double cooling)
void	setCRIRGBFilter(double CRIRGBFilter)
void	setDigitalGain(double digitalGain)
void	setEmissionFilterChangerArray(double[] emissionFilterChangerArray)
void	setExcitationArray(double[] excitationArray)
void	setExposureArray(double[] exposureArray)
void	setFilterTurretArray(double[] filterTurretArray)
void	setFocusPosition(double focusPosition)
void	setGain(double gain)
void	setLayerString(java.lang.String[] layerString)
void	setLeicaCondenserTurret(double leicaCondenserTurret)
void	setLeicaFilterCubeArray(double[] leicaFilterCubeArray)
void	setLeicaFIMArray(double[] leicaFIMArray)
void	setLeicaICTurret(double leicaICTurret)
void	setLeicaMagnificationChanger(double leicaMagnificationChanger)
void	setLightMode(double lightMode)
void	setLudlAuxWheel1(double ludlAuxWheel1)
void	setLudlMainWheel1Array(double[] ludlMainWheel1Array)
void	setMicrofocusPosition(double microfocusPosition)
void	setMicroscope(java.lang.String microscope)
void	setObjectiveName(double objectiveName)
void	setObjectivePosition(double objectivePosition)
void	setOffset(double offset)
void	setSensitivityArray(double[] sensitivityArray)
void	setSutterDG4Filter(double SutterDG4Filter)
void	setSutterL10Filter1Array(double[] SutterL10Filter1Array)
void	setSutterL10Filter2Array(double[] SutterL10Filter2Array)
void	setWavelengthArray(double[] wavelengthArray)
void	setXPosition(double xPosition)
void	setYPosition(double yPosition)
void	setZPosition(double zPosition)

Methods inherited from class gov.nih.mipav.model.file.FileInfoBase

copyCoreInfo, copyCoreInfo, displayAboutInfo, displayPrimaryInfo, finalize, getAboutInfo, getAllSameDimUnits, getAreaUnitsOfMeasureStr, getAxisDirection, getAxisOrientation, getAxisOrientation, getAxisOrientationFromStr, getAxisOrientationStr, getCameraMake, getCameraModel, getCompressionType, getDataType, getDataTypeFromStr, getEndianess, getEndianessFromStr, getExposureTime, getExtents, getFileDirectory, getFileFormat, getFileName, getFileSuffix, getFNumber, getFocalLength, getFocalLength35, getImageOrientation, getImageOrientationFromStr, getImageOrientationStr, getIs2_5D, getISOSpeedRating, getLPSOrigin, getLUT, getMax, getMaxB, getMaxG, getMaxR, getMin, getMinB, getMinG, getMinR, getModality, getModalityFromStr, getModalityStr, getModalityStr, getMultiFile, getNumOfBytesPerPixel, getOffset, getOrigin, getOrigin, getOriginalEndianess, getOriginAtSlice, getPhotometric, getPixelPadValue, getPrimaryInfo, getRescaleIntercept, getRescaleSlope, getResolution, getResolutions, getSize, getSliceThickness, getUnitsOfMeasure, getUnitsOfMeasure, getUnitsOfMeasureAbbrevStr, getUnitsOfMeasureAbbrevStr, getUnitsOfMeasureFromStr, getUnitsOfMeasureStr, getUnitsOfMeasureStr, getVolumeUnitsOfMeasureStr, isDicomOrdered, oppositeOrient, sameAxis, setAxisOrientation, setAxisOrientation, setCameraMake, setCameraModel, setCompressionType, setDataType, setEndianess, setExposureTime, setExtents, setExtents, setFileDirectory, setFileFormat, setFileName, setFileSuffix, setFNumber, setFocalLength, setFocalLength35, setImageOrientation, setISOSpeedRating, setLUT, setMax, setMaxB, setMaxG, setMaxR, setMin, setMinB, setMinG, setMinR, setModality, setMultiFile, setOffset, setOrigin, setOrigin, setOriginalEndianess, setPhotometric, setPixelPadValue, setRescaleIntercept, setRescaleSlope, setResolutions, setResolutions, setSliceThickness, setTagDescription, setTagName, setUnitsOfMeasure, setUnitsOfMeasure, setUnitsOfMeasure, setUnitsOfMeasure, toString

Methods inherited from class gov.nih.mipav.model.structures.ModelSerialCloneable

clone, nativeClone

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

layerString

private java.lang.String[] layerString

Use serialVersionUID for interoperability.

bitDepth

short bitDepth

autoContrast

double autoContrast

binning

double binning

camera

java.lang.String camera

channelArray

java.lang.String[] channelArray

colorization

double colorization

cooling

double cooling

CRIRGBFilter

double CRIRGBFilter

digitalGain

double digitalGain

emissionFilterChangerArray

double[] emissionFilterChangerArray

channelNumber

int channelNumber

excitationArray

double[] excitationArray

exposureArray

double[] exposureArray

filterTurretArray

double[] filterTurretArray

focusPosition

double focusPosition

gain

double gain

leicaCondenserTurret

double leicaCondenserTurret

leicaFilterCubeArray

double[] leicaFilterCubeArray

leicaFIMArray

double[] leicaFIMArray

leicaICTurret

double leicaICTurret

leicaMagnificationChanger

double leicaMagnificationChanger

lightMode

double lightMode

ludlAuxWheel1

double ludlAuxWheel1

ludlMainWheel1Array

double[] ludlMainWheel1Array

microscope

java.lang.String microscope

microfocusPosition

double microfocusPosition

objectiveName

double objectiveName

objectivePosition

double objectivePosition

offset

double offset

sensitivityArray

double[] sensitivityArray

SutterDG4Filter

double SutterDG4Filter

SutterL10Filter1Array

double[] SutterL10Filter1Array

SutterL10Filter2Array

double[] SutterL10Filter2Array

wavelengthArray

double[] wavelengthArray

xPosition

double xPosition

yPosition

double yPosition

zPosition

double zPosition

Constructor Detail

FileInfoLIFF

public FileInfoLIFF(java.lang.String name,
                    java.lang.String directory,
                    int format)

File info storage constructor.

Parameters:

name - file name

directory - directory

format - file format

Method Detail

displayAboutInfo

public void displayAboutInfo(JDialogBase dlog,
                             TransMatrix matrix)

Displays the file information.

Specified by:

displayAboutInfo in class FileInfoBase

Parameters:

dlog - dialog box that is written to

matrix - transformation matrix

setLayerString

public void setLayerString(java.lang.String[] layerString)

setBitDepth

public void setBitDepth(short bitDepth)

setAutoContrast

public void setAutoContrast(double autoContrast)

setBinning

public void setBinning(double binning)

setCamera

public void setCamera(java.lang.String camera)

setChannelArray

public void setChannelArray(java.lang.String[] channelArray)

setColorization

public void setColorization(double colorization)

setCooling

public void setCooling(double cooling)

setCRIRGBFilter

public void setCRIRGBFilter(double CRIRGBFilter)

setDigitalGain

public void setDigitalGain(double digitalGain)

setEmissionFilterChangerArray

public void setEmissionFilterChangerArray(double[] emissionFilterChangerArray)

setExcitationArray

public void setExcitationArray(double[] excitationArray)

setExposureArray

public void setExposureArray(double[] exposureArray)

setFilterTurretArray

public void setFilterTurretArray(double[] filterTurretArray)

setFocusPosition

public void setFocusPosition(double focusPosition)

setGain

public void setGain(double gain)

setLeicaCondenserTurret

public void setLeicaCondenserTurret(double leicaCondenserTurret)

setLeicaFilterCubeArray

public void setLeicaFilterCubeArray(double[] leicaFilterCubeArray)

setLeicaFIMArray

public void setLeicaFIMArray(double[] leicaFIMArray)

setLeicaICTurret

public void setLeicaICTurret(double leicaICTurret)

setLeicaMagnificationChanger

public void setLeicaMagnificationChanger(double leicaMagnificationChanger)

setLightMode

public void setLightMode(double lightMode)

setLudlAuxWheel1

public void setLudlAuxWheel1(double ludlAuxWheel1)

setLudlMainWheel1Array

public void setLudlMainWheel1Array(double[] ludlMainWheel1Array)

setMicrofocusPosition

public void setMicrofocusPosition(double microfocusPosition)

setMicroscope

public void setMicroscope(java.lang.String microscope)

setObjectiveName

public void setObjectiveName(double objectiveName)

setObjectivePosition

public void setObjectivePosition(double objectivePosition)

setOffset

public void setOffset(double offset)

setSensitivityArray

public void setSensitivityArray(double[] sensitivityArray)

setSutterDG4Filter

public void setSutterDG4Filter(double SutterDG4Filter)

setSutterL10Filter1Array

public void setSutterL10Filter1Array(double[] SutterL10Filter1Array)

setSutterL10Filter2Array

public void setSutterL10Filter2Array(double[] SutterL10Filter2Array)

setWavelengthArray

public void setWavelengthArray(double[] wavelengthArray)

setXPosition

public void setXPosition(double xPosition)

setYPosition

public void setYPosition(double yPosition)

setZPosition

public void setZPosition(double zPosition)